BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474504
Length=1896
Score E
Sequences producing significant alignments: (Bits) Value
AT1G53710.1 | Symbols: | Calcineurin-like metallo-phosphoester... 2820 0.0
AT1G53708.1 | Symbols: RTFL9 | ROTUNDIFOLIA like 9 | chr1:20052... 54.7 3e-06
> AT1G53710.1 | Symbols: | Calcineurin-like metallo-phosphoesterase
superfamily protein | chr1:20053161-20056396 REVERSE LENGTH=1890
Length=1890
Score = 2820 bits (1527), Expect = 0.0
Identities = 1786/1907 (94%), Gaps = 34/1907 (2%)
Strand=Plus/Plus
Query 1 TACTCAAACGCAGCTCAGCGTCTGTCGCGTCTTGACCGCTATTTTTGGTCAACAACAACG 60
|||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 2 TACTCAAACGCAGCTCAGCGTCTGTCGCGTCTTGACCGCT-CTTTTGGTCAACGACAACG 60
Query 61 ATCACCAG----ATATCTCGGCGAAGCAAGCAAAGCCGAGAAGGGAGGAGATTCAGATGC 116
|||| || |||||||||| | ||||||||||||||||||||||||||||||| |
Sbjct 61 ATCATTAGATACATATCTCGGC---G-AAGCAAAGCCGAGAAGGGAGGAGATTCAGATAC 116
Query 117 TCGG-GAAGATGAAACACCACCATAAGCTCACGGTGGCCTTATGTCTCATTTGGGCTGCG 175
|||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 117 TCGGAAAAAATGAAACACCACCATAAGCTCACGGTGGCGTTATGTCTCATTTGGGCTGCG 176
Query 176 ACGATCCTCTACGGCGAAATGTTCGCCTTCTGGGTTCCTTCTCTCTTCACTTGTTCTTGG 235
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 ACGATCCTCTACGGAGAAATGTTCGCCTTCTGGGTTCCTTCTCTCTTCACTTGTTCTTGG 236
Query 236 CCTCACCATAAGAGTTATGGAGTGGAGAGTGATGGGAATTTTACTAAAGTAGCCATTGTT 295
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 237 CCTCACCATAAGAGTGATGGAGTGGAGAGTGATGGAAATTTTACTAAAGTAGCCATTGTT 296
Query 296 ACTGATCCACAGCTCATGGATAAGACATCGTTTCGTTTGTCGTCAAAGACGCTTGCTTTG 355
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 297 ACTGATCCACAGCTCATGGATAAGACATCGTTTCGTTTGTCGTCAAAGACACTTGCTTTG 356
Query 356 GAGCTTGCTCAGCTTTATACTGATATAAACATGCGGAGATCATTCTTTCGGTCTGTCTTG 415
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 GAGCTTGCTCAGTTTTATACTGATATAAACATGCGGAGATCATTCTTTCGGTCTGTCTTG 416
Query 416 CCCTTCAAACCCGATGTTGTTTTGTTTTTAGGTGATTATTTCGACAGCGGGCCATTTCTT 475
|| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 417 CCTTTCAAACCCGATGTTGTTTTGTTTTTAGGTGATTATTTCGATGGCGGGCCATTTCTT 476
Query 476 CCCGAGGAAGAATGGCAGGAATCTTTAAGCCGATTTAAACATGTATTTGGTTTGAATTCT 535
||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||
Sbjct 477 TCCGAGGAAGAATGGCAGGAGTCTTTAAACCGATTGAAACATGTATTTGGTTTGAATTCA 536
Query 536 CAAGGCAAAGTTGGTGACATCCCTACATTTTACATCCCTGGGAACCATGATC-TTGGCTA 594
|||||| |||||| || |||||||||||||||||||||||||| ||||| | |||||||
Sbjct 537 GAAGGCAGAGTTGGGGATATCCCTACATTTTACATCCCTGGGAATCATGA-CATTGGCTA 595
Query 595 TTCTCGGGTTGCTTCCCATAAGCAAGACGTGATTGATCGATACGAAAAAGTATTTGGGTT 654
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 596 TTCTCGGGTTGCTTCCCATAAGCAAGGCGTGATTGATCGATACGAAAAAGTATTTGGGGT 655
Query 655 CAGAAACCACAGATTTATGATTGGAAGTGTTGAGTTCATCAGTATTGATGCACAAGCTAT 714
|||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 656 CAGAAACCGCAGATTTATGATTGGAAATGTTGAGTTCATCAGTATTGATGCCCAAGCTAT 715
Query 715 CGATGGGAATCCTCAAAAGGATCTAGCATCCGAAGTTTGGAAGTTTGTACAAAATGTCTC 774
|||||||||| || |||||||||| || || |||||||||||||||||||||||||||||
Sbjct 716 CGATGGGAATTCTAAAAAGGATCTGGCCTCAGAAGTTTGGAAGTTTGTACAAAATGTCTC 775
Query 775 AACCGATGCACAGTCACATGACTCACATCCTAGAGTTTTGTTGACCCACATCCCGTTATA 834
||| | || | |||| | ||||||||||||||||| |||||||||||||| |||||
Sbjct 776 CACC---G-AC-G-CACA-G--TCACATCCTAGAGTTTTATTGACCCACATCCCATTATA 826
Query 835 TCGGCCCGATCAAACCCCATGCGGCCCTCACCGTGGT-GCTTCTGTCATTGATCAGCGGT 893
|||||| |||||||||||||| |||||||| |||||| | ||||||||||||||||||||
Sbjct 827 TCGGCCTGATCAAACCCCATGTGGCCCTCATCGTGGTAG-TTCTGTCATTGATCAGCGGT 885
Query 894 TTTGGCGCCATTTTCAAGATCAAGAAGTAATATACCAGAATTATATCACTCCAGAATCAT 953
|||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 886 TTTGGCGCCATTCTCAAGATCAAGAAGTAATATATCAAAATTATATCACTCCAGAATCAT 945
Query 954 CTACGAAGTTATTGGAGTTGATCAAACCTATACTCGTTCTGTCTGGCCATGATCATGACC 1013
||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 946 CTACGAAGTTACTGGAGTTGATCAAACCCATACTCGTTCTGTCTGGCCATGATCATGACC 1005
Query 1014 AATGCACTATAACCCACAAATCGAAAGCAGGATCTGTAAAAGAGCATACTGTAGGTACTA 1073
| || ||| ||| |||||| ||||||||||||||||||| ||||||||| ||||||||
Sbjct 1006 AGTGTACTGTAATCCACAAGTCGAAAGCAGGATCTGTAACTGAGCATACTTTAGGTACTG 1065
Query 1074 TAAGCTGGCAACAAGGAAATATATATCCGTCATTCATGCTATTATCTGTTCCCAATGCCA 1133
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 1066 TAAGTTGGCAACAAGGAAATATACATCCGTCATTCATGCTATTATCTGTTCCCAAAGCCT 1125
Query 1134 TCCATCAAAACTCATCTGATCTAGATAAAATGTTACACACCCAATTATGCTTCCTTCCGT 1193
|||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1126 TCCATCGAAACTCATCTGATCCAGATAAAATGTTACACACCCAATTATGCTTCCTTCCGA 1185
Query 1194 GCCAGTTATTCATTTACATGTGGTACCTTTCTCTATTCGCTATGTCCCTTCTTGCTCTCC 1253
|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1186 GCCAATTATTCATTTACATGTGGTACCTTTCTCTATTCGTTATGTCCCTTCTTGCTCTCC 1245
Query 1254 TT-TTCTGGCCAAATCATGGAATAAGCTTCTTAAACAACGCTGCAGACTGTATCTCGAAT 1312
|| || ||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1246 TTCTT-TGGCCAAATCATGGAATTAGCTTCTTAAACAACGCTGCAGACTGTATCTCAAAT 1304
Query 1313 GTAATGAAGTCAAGCTTTTTAAGCAGCGTCACCAAGGAGAAGAATGAAGATGAGAACTGT 1372
|||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||
Sbjct 1305 GTAATGAAGTCAAGCTTTTTAAGCAGCGTCACGAAGGAGAAGAACGAAGATGAAAACTGT 1364
Query 1373 GAGTATGAAATGGTATGGGACGCAGAAGGATCTATGCATCTTGTGAAGAAAGCTCTTCAA 1432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1365 GAGTATGAAATGGTATGGGACGCAGAAGGATCTATGCATCTTGTGAAGAAAGCTCTTCAA 1424
Query 1433 ACTCCTGTGAAACGTCAAAGCGATAAACCTCTTGTAGAAAAGGGTAACGCGGTGTTGAGA 1492
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1425 ACTCCTGTGAAACGTCAAAGCGATAAACCTCTTGTAGAAAAGGGTAACGCGGTGATGAGA 1484
Query 1493 TCAGCTGCTAGAAAAAACGCTAGCGAACAGATTGAGCTTGTGATGGACGCGGATGTAAAT 1552
||||| |||||||| ||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1485 TCAGCGGCTAGAAAGAACGCTAGCGAACAGATTGAGCTTGTGATGGACTCAGATGTAAAT 1544
Query 1553 GCA-GTTGCTGGTGGGTCTGATCCTCTGATGAGATCAGCATCAAAATCAAGAACAAAACT 1611
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1545 GCAAGT-GCTGGTGGGTCTGATCCTCTGATGAGATCAGCATCAAAATCAAGAACAAAACT 1603
Query 1612 TGTGATCCAGAGAGTGATACGTACAATCATGATGATCATCGTCATTGCGGCGTTAAACGT 1671
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1604 TGTGATCCAGAGAGTGATACGTACAATCATGATGGTCATCGTCATTGCGGCGTTAAACGT 1663
Query 1672 TCCCATTTACATC-TGGCTGCTGTTCAAGGATTGGGTTGAGCAGGAGTGATAAACTAGAG 1730
|||||||||||| || ||||||||||||||||| ||||||||||||||| ||||| ||
Sbjct 1664 TCCCATTTACATGATGT-TGCTGTTCAAGGATTGGATTGAGCAGGAGTGATCAACTAAAG 1722
Query 1731 ATAAATCTCATTGGCATGAAATTTTGGACTAAGCAAACTATCATCTGTAGGATTTGTGGT 1790
|||||||| |||| |||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1723 ATAAATCTTATTGACATGAAATTTTGGATTACGCAAACTATCATCTGTAGGATTTGTGGT 1782
Query 1791 GAAAAGTGAAAACTGTTGTTGTATTATTAGAATATGAGAATCAAAGGAGACATGTTTTAG 1850
||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||
Sbjct 1783 GAAAAGTGAAAACTGTTGT---ATTATTAGAATATGAGAATCAAAAAAGACATGTTT-AG 1838
Query 1851 TCTATATGGTTCAACATAA-CCATAGACTTATTTATTTGGTCTTATT 1896
||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1839 TCTATATGGTTCAACATAAACCATAGACTTATTTATTTGGTCTTATT 1885
> AT1G53708.1 | Symbols: RTFL9 | ROTUNDIFOLIA like 9 | chr1:20052393-20053195
FORWARD LENGTH=630
Length=630
Score = 54.7 bits (29), Expect = 3e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Minus
Query 1868 AACCATAGACTTATTTATTTGGTCTTATT 1896
|||||||||||||||||||||||||||||
Sbjct 629 AACCATAGACTTATTTATTTGGTCTTATT 601
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93875019150
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5