BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg474504 Length=1896 Score E Sequences producing significant alignments: (Bits) Value AT1G53710.1 | Symbols: | Calcineurin-like metallo-phosphoester... 2820 0.0 AT1G53708.1 | Symbols: RTFL9 | ROTUNDIFOLIA like 9 | chr1:20052... 54.7 3e-06 > AT1G53710.1 | Symbols: | Calcineurin-like metallo-phosphoesterase superfamily protein | chr1:20053161-20056396 REVERSE LENGTH=1890 Length=1890 Score = 2820 bits (1527), Expect = 0.0 Identities = 1786/1907 (94%), Gaps = 34/1907 (2%) Strand=Plus/Plus Query 1 TACTCAAACGCAGCTCAGCGTCTGTCGCGTCTTGACCGCTATTTTTGGTCAACAACAACG 60 |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 2 TACTCAAACGCAGCTCAGCGTCTGTCGCGTCTTGACCGCT-CTTTTGGTCAACGACAACG 60 Query 61 ATCACCAG----ATATCTCGGCGAAGCAAGCAAAGCCGAGAAGGGAGGAGATTCAGATGC 116 |||| || |||||||||| | ||||||||||||||||||||||||||||||| | Sbjct 61 ATCATTAGATACATATCTCGGC---G-AAGCAAAGCCGAGAAGGGAGGAGATTCAGATAC 116 Query 117 TCGG-GAAGATGAAACACCACCATAAGCTCACGGTGGCCTTATGTCTCATTTGGGCTGCG 175 |||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 117 TCGGAAAAAATGAAACACCACCATAAGCTCACGGTGGCGTTATGTCTCATTTGGGCTGCG 176 Query 176 ACGATCCTCTACGGCGAAATGTTCGCCTTCTGGGTTCCTTCTCTCTTCACTTGTTCTTGG 235 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 177 ACGATCCTCTACGGAGAAATGTTCGCCTTCTGGGTTCCTTCTCTCTTCACTTGTTCTTGG 236 Query 236 CCTCACCATAAGAGTTATGGAGTGGAGAGTGATGGGAATTTTACTAAAGTAGCCATTGTT 295 ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| Sbjct 237 CCTCACCATAAGAGTGATGGAGTGGAGAGTGATGGAAATTTTACTAAAGTAGCCATTGTT 296 Query 296 ACTGATCCACAGCTCATGGATAAGACATCGTTTCGTTTGTCGTCAAAGACGCTTGCTTTG 355 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 297 ACTGATCCACAGCTCATGGATAAGACATCGTTTCGTTTGTCGTCAAAGACACTTGCTTTG 356 Query 356 GAGCTTGCTCAGCTTTATACTGATATAAACATGCGGAGATCATTCTTTCGGTCTGTCTTG 415 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 357 GAGCTTGCTCAGTTTTATACTGATATAAACATGCGGAGATCATTCTTTCGGTCTGTCTTG 416 Query 416 CCCTTCAAACCCGATGTTGTTTTGTTTTTAGGTGATTATTTCGACAGCGGGCCATTTCTT 475 || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 417 CCTTTCAAACCCGATGTTGTTTTGTTTTTAGGTGATTATTTCGATGGCGGGCCATTTCTT 476 Query 476 CCCGAGGAAGAATGGCAGGAATCTTTAAGCCGATTTAAACATGTATTTGGTTTGAATTCT 535 ||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||| Sbjct 477 TCCGAGGAAGAATGGCAGGAGTCTTTAAACCGATTGAAACATGTATTTGGTTTGAATTCA 536 Query 536 CAAGGCAAAGTTGGTGACATCCCTACATTTTACATCCCTGGGAACCATGATC-TTGGCTA 594 |||||| |||||| || |||||||||||||||||||||||||| ||||| | ||||||| Sbjct 537 GAAGGCAGAGTTGGGGATATCCCTACATTTTACATCCCTGGGAATCATGA-CATTGGCTA 595 Query 595 TTCTCGGGTTGCTTCCCATAAGCAAGACGTGATTGATCGATACGAAAAAGTATTTGGGTT 654 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | Sbjct 596 TTCTCGGGTTGCTTCCCATAAGCAAGGCGTGATTGATCGATACGAAAAAGTATTTGGGGT 655 Query 655 CAGAAACCACAGATTTATGATTGGAAGTGTTGAGTTCATCAGTATTGATGCACAAGCTAT 714 |||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||||| Sbjct 656 CAGAAACCGCAGATTTATGATTGGAAATGTTGAGTTCATCAGTATTGATGCCCAAGCTAT 715 Query 715 CGATGGGAATCCTCAAAAGGATCTAGCATCCGAAGTTTGGAAGTTTGTACAAAATGTCTC 774 |||||||||| || |||||||||| || || ||||||||||||||||||||||||||||| Sbjct 716 CGATGGGAATTCTAAAAAGGATCTGGCCTCAGAAGTTTGGAAGTTTGTACAAAATGTCTC 775 Query 775 AACCGATGCACAGTCACATGACTCACATCCTAGAGTTTTGTTGACCCACATCCCGTTATA 834 ||| | || | |||| | ||||||||||||||||| |||||||||||||| ||||| Sbjct 776 CACC---G-AC-G-CACA-G--TCACATCCTAGAGTTTTATTGACCCACATCCCATTATA 826 Query 835 TCGGCCCGATCAAACCCCATGCGGCCCTCACCGTGGT-GCTTCTGTCATTGATCAGCGGT 893 |||||| |||||||||||||| |||||||| |||||| | |||||||||||||||||||| Sbjct 827 TCGGCCTGATCAAACCCCATGTGGCCCTCATCGTGGTAG-TTCTGTCATTGATCAGCGGT 885 Query 894 TTTGGCGCCATTTTCAAGATCAAGAAGTAATATACCAGAATTATATCACTCCAGAATCAT 953 |||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||| Sbjct 886 TTTGGCGCCATTCTCAAGATCAAGAAGTAATATATCAAAATTATATCACTCCAGAATCAT 945 Query 954 CTACGAAGTTATTGGAGTTGATCAAACCTATACTCGTTCTGTCTGGCCATGATCATGACC 1013 ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 946 CTACGAAGTTACTGGAGTTGATCAAACCCATACTCGTTCTGTCTGGCCATGATCATGACC 1005 Query 1014 AATGCACTATAACCCACAAATCGAAAGCAGGATCTGTAAAAGAGCATACTGTAGGTACTA 1073 | || ||| ||| |||||| ||||||||||||||||||| ||||||||| |||||||| Sbjct 1006 AGTGTACTGTAATCCACAAGTCGAAAGCAGGATCTGTAACTGAGCATACTTTAGGTACTG 1065 Query 1074 TAAGCTGGCAACAAGGAAATATATATCCGTCATTCATGCTATTATCTGTTCCCAATGCCA 1133 |||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||| Sbjct 1066 TAAGTTGGCAACAAGGAAATATACATCCGTCATTCATGCTATTATCTGTTCCCAAAGCCT 1125 Query 1134 TCCATCAAAACTCATCTGATCTAGATAAAATGTTACACACCCAATTATGCTTCCTTCCGT 1193 |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1126 TCCATCGAAACTCATCTGATCCAGATAAAATGTTACACACCCAATTATGCTTCCTTCCGA 1185 Query 1194 GCCAGTTATTCATTTACATGTGGTACCTTTCTCTATTCGCTATGTCCCTTCTTGCTCTCC 1253 |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1186 GCCAATTATTCATTTACATGTGGTACCTTTCTCTATTCGTTATGTCCCTTCTTGCTCTCC 1245 Query 1254 TT-TTCTGGCCAAATCATGGAATAAGCTTCTTAAACAACGCTGCAGACTGTATCTCGAAT 1312 || || ||||||||||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 1246 TTCTT-TGGCCAAATCATGGAATTAGCTTCTTAAACAACGCTGCAGACTGTATCTCAAAT 1304 Query 1313 GTAATGAAGTCAAGCTTTTTAAGCAGCGTCACCAAGGAGAAGAATGAAGATGAGAACTGT 1372 |||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||| Sbjct 1305 GTAATGAAGTCAAGCTTTTTAAGCAGCGTCACGAAGGAGAAGAACGAAGATGAAAACTGT 1364 Query 1373 GAGTATGAAATGGTATGGGACGCAGAAGGATCTATGCATCTTGTGAAGAAAGCTCTTCAA 1432 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1365 GAGTATGAAATGGTATGGGACGCAGAAGGATCTATGCATCTTGTGAAGAAAGCTCTTCAA 1424 Query 1433 ACTCCTGTGAAACGTCAAAGCGATAAACCTCTTGTAGAAAAGGGTAACGCGGTGTTGAGA 1492 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1425 ACTCCTGTGAAACGTCAAAGCGATAAACCTCTTGTAGAAAAGGGTAACGCGGTGATGAGA 1484 Query 1493 TCAGCTGCTAGAAAAAACGCTAGCGAACAGATTGAGCTTGTGATGGACGCGGATGTAAAT 1552 ||||| |||||||| ||||||||||||||||||||||||||||||||| | ||||||||| Sbjct 1485 TCAGCGGCTAGAAAGAACGCTAGCGAACAGATTGAGCTTGTGATGGACTCAGATGTAAAT 1544 Query 1553 GCA-GTTGCTGGTGGGTCTGATCCTCTGATGAGATCAGCATCAAAATCAAGAACAAAACT 1611 ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1545 GCAAGT-GCTGGTGGGTCTGATCCTCTGATGAGATCAGCATCAAAATCAAGAACAAAACT 1603 Query 1612 TGTGATCCAGAGAGTGATACGTACAATCATGATGATCATCGTCATTGCGGCGTTAAACGT 1671 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1604 TGTGATCCAGAGAGTGATACGTACAATCATGATGGTCATCGTCATTGCGGCGTTAAACGT 1663 Query 1672 TCCCATTTACATC-TGGCTGCTGTTCAAGGATTGGGTTGAGCAGGAGTGATAAACTAGAG 1730 |||||||||||| || ||||||||||||||||| ||||||||||||||| ||||| || Sbjct 1664 TCCCATTTACATGATGT-TGCTGTTCAAGGATTGGATTGAGCAGGAGTGATCAACTAAAG 1722 Query 1731 ATAAATCTCATTGGCATGAAATTTTGGACTAAGCAAACTATCATCTGTAGGATTTGTGGT 1790 |||||||| |||| |||||||||||||| || |||||||||||||||||||||||||||| Sbjct 1723 ATAAATCTTATTGACATGAAATTTTGGATTACGCAAACTATCATCTGTAGGATTTGTGGT 1782 Query 1791 GAAAAGTGAAAACTGTTGTTGTATTATTAGAATATGAGAATCAAAGGAGACATGTTTTAG 1850 ||||||||||||||||||| ||||||||||||||||||||||| |||||||||| || Sbjct 1783 GAAAAGTGAAAACTGTTGT---ATTATTAGAATATGAGAATCAAAAAAGACATGTTT-AG 1838 Query 1851 TCTATATGGTTCAACATAA-CCATAGACTTATTTATTTGGTCTTATT 1896 ||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1839 TCTATATGGTTCAACATAAACCATAGACTTATTTATTTGGTCTTATT 1885 > AT1G53708.1 | Symbols: RTFL9 | ROTUNDIFOLIA like 9 | chr1:20052393-20053195 FORWARD LENGTH=630 Length=630 Score = 54.7 bits (29), Expect = 3e-06 Identities = 29/29 (100%), Gaps = 0/29 (0%) Strand=Plus/Minus Query 1868 AACCATAGACTTATTTATTTGGTCTTATT 1896 ||||||||||||||||||||||||||||| Sbjct 629 AACCATAGACTTATTTATTTGGTCTTATT 601 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 93875019150 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5