BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474506
Length=1581
Score E
Sequences producing significant alignments: (Bits) Value
AT1G53720.1 | Symbols: ATCYP59, CYP59 | cyclophilin 59 | chr1:2... 2412 0.0
> AT1G53720.1 | Symbols: ATCYP59, CYP59 | cyclophilin 59 | chr1:20056533-20059638
FORWARD LENGTH=1770
Length=1770
Score = 2412 bits (1306), Expect = 0.0
Identities = 1499/1590 (94%), Gaps = 22/1590 (1%)
Strand=Plus/Plus
Query 1 TGCACCTCCCTTCTTCTCTCG--CACTGTTTCTGAGGTTAAAT-CAAGAAGT-AAACATG 56
|||||||| |||||||||||| | |||||||||||||| | |||||||| |||||||
Sbjct 65 TGCACCTCTCTTCTTCTCTCGCTCTCTGTTTCTGAGGTT--CTGCAAGAAGTAAAACATG 122
Query 57 TCAGTTCTTATTGTGACGAGCCTTGGGGATATTGTAATTGACCTTTACCCGAATAAATGC 116
|||||||||||||||||||||||||| ||||| |||||||||||| || || ||||||||
Sbjct 123 TCAGTTCTTATTGTGACGAGCCTTGGTGATATAGTAATTGACCTTCACTCGGATAAATGC 182
Query 117 CCTTTGACCTGCAAGAACTTCCTCAAGCTTTGCAAGATCAAGTACTACAATGGGTGCCTT 176
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 183 CCTTTGACTTGCAAGAACTTCCTTAAGCTTTGCAAGATCAAGTACTACAATGGGTGTCTT 242
Query 177 TTTCACACTGTGCAAAATGATTTCACTGCACAGACGGGTGATCCAACTGGCACGGGAGCT 236
||||||||||||||||| |||||||| |||||||| |||||||||||||| |||||||||
Sbjct 243 TTTCACACTGTGCAAAAGGATTTCACAGCACAGACTGGTGATCCAACTGGTACGGGAGCT 302
Query 237 GGTGGAGATTCAATCTACAAATTTCTGTACGGTGAGCAGGCTCGtttttttC-GTGATGA 295
|||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||
Sbjct 303 GGTGGAGATTCAATCTACAAATTTCTGTACGGTGAGCAGGCTCG-TTTTTACAAAGATGA 361
Query 296 GATTCATCTTGATTTAAAACATTCGAAGACCGGCACTGTTGCAATGGCCAGTGGGGGAGA 355
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 362 GATTCATCTTGATTTAAAACATTCAAAGACCGGCACTGTTGCAATGGCCAGTGGTGGAGA 421
Query 356 AAATCTCAATGCTTCCCAGTTCTATTTCACACTTCGTGATGATTTGGACTATCTTGATGG 415
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 GAATCTCAATGCTTCCCAGTTCTATTTCACACTTCGTGATGATTTGGACTATCTTGATGG 481
Query 416 GAAACACACTGTGTTTGGGGAGATTGCCGAGGGGTTTGACACTTTGACTAGGATAAACGA 475
|||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||
Sbjct 482 GAAACACACTGTGTTTGGACAGATTGCTGAGGGGTTTGACACTTTGACTAGGATAAATGA 541
Query 476 AGCTTATGTTGATGCAAAGAACAGACCCTATAAAAACATTAGAATCAAGCACACACATAT 535
||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 542 AGCTTATGTTGATCCGAAGAACAGACCCTATAAGAACATTAGAATCAAGCACACACATAT 601
Query 536 ACTTGAAGATCCATTTGATGATCCTCCACAGCTGGCTGAGATGATACCAGATGCTTCCCC 595
|||||| ||||||||||||||||| |||||||||||||| ||||| ||||||||||||||
Sbjct 602 ACTTGATGATCCATTTGATGATCCCCCACAGCTGGCTGAAATGATGCCAGATGCTTCCCC 661
Query 596 CGAAGGAAAACCGAAGGAAGAGGTCGAAGATGATGTACGACTTGAAGATGATTGGGTTCC 655
|||||||||||||| ||||||||| ||||||| || || ||||||||||||||||||||
Sbjct 662 TGAAGGAAAACCGAAAGAAGAGGTCAAAGATGACGTGCGGCTTGAAGATGATTGGGTTCC 721
Query 656 AATGGATGAAGAACTTGGTGTTCAGGAACTGGAGGAGGTTATCCGCGAAAAGGCTGCCCA 715
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 722 AATGGATGAAGAACTTGGTGCTCAGGAACTGGAGGAGGTTATCCGCGAAAAGGCAGCCCA 781
Query 716 TTCTAGTGCTGTTGTACTTGAAAGTATAGGAGATATCCCTGAGGCTGAGGTAAAACCTCC 775
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 782 TTCAAGTGCTGTTGTACTTGAAAGTATAGGAGATATCCCCGAGGCTGAGGTAAAACCTCC 841
Query 776 TGACAATGTGCTGTTCGTCTGCAAACTGAATCCTGTGACTGAGGATGAGGACCTCCATAC 835
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 842 TGACAATGTGCTGTTCGTCTGCAAACTGAATCCAGTGACTGAGGATGAAGACCTCCATAC 901
Query 836 CATTTTTTCACGCTTTGGAACTGTTGTATCGGCTGATGTAATCCGGGATTTCAAGACAGG 895
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 902 CATTTTTTCACGCTTTGGAACCGTTGTATCGGCTGATGTAATCCGGGATTTCAAGACAGG 961
Query 896 TGACAGTTTGTGCTATGCGTTTATAGAGTTTGAGAACAAGGAGGCATGCGAACAAGCGTA 955
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 962 TGACAGTTTGTGCTATGCTTTTATAGAGTTTGAGAACAAGGAGTCATGCGAACAAGCGTA 1021
Query 956 TTTTAAGATGGACAATGCTCTGATCGATGATAGACGAATACATGTGGATTTCAGTCAGAG 1015
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1022 CTTTAAGATGGACAATGCTCTGATCGATGATAGACGGATACATGTGGATTTCAGTCAGAG 1081
Query 1016 TGTGTC-AAAGCTTTGGTCACAGTTCCGGCAGAAAGACTCCCAAAAGGGTAAAGGGAATG 1074
|||||| ||| ||||||||||||||| |||| ||||||||||||||||| ||||||||||
Sbjct 1082 TGTGTCCAAA-CTTTGGTCACAGTTCAGGCAAAAAGACTCCCAAAAGGGCAAAGGGAATG 1140
Query 1075 GGTGTTTCAAATGCGGCTCGACGGATCATATTGCCAAGGACTGTGTGGGTGGTAATCAGT 1134
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1141 GGTGTTTCAAATGCGGCTCGACGGATCATATTGCCAAGGACTGTGTGGGTGGTC--C-GT 1197
Query 1135 CTTCAAAGTTCATTGTAAAAGATCAAAACAGACAGCACGGAGGAGGTGAAGGCTATGATA 1194
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1198 CTTCAAAGTTTATTGTAAAAGATCAAAACAGACAGCACGGAGGAGGTGAAGGCTATGAGA 1257
Query 1195 TGGTGTTTGAGGGTGATGTGCCTGAAATCCCCAagagagagcatagtcatgagagggaga 1254
||||||||||||||||||||| ||||| ||||||| | | ||||||||||||||||||
Sbjct 1258 TGGTGTTTGAGGGTGATGTGCATGAAACCCCCAAGC-ATA--ATAGTCATGAGAGGGAGA 1314
Query 1255 ggagtgagaagattcagaggagaAGTCCTCATGGTAATGGGGAAGGCAAAAGAC-GTCAC 1313
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1315 GGAGTGAGAAGATTCAGAGGAGAAGTCCTCATGGTAATGGGGAAGGCAAAAGACAG-CAC 1373
Query 1314 AGAGATGAA-GTTGACGATGGTAGAAGACAGCATGATCGGGAAGACGCACgagaaatgga 1372
||||||||| || || ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1374 AGAGATGAACGT-GATGATGGTAGAAGACAGCATGATCGGGAAGACGCACGAGAACTGGA 1432
Query 1373 gaggaaacacagagagagaaaagaaagagagagtagggaagatgaagacagaagaagaag 1432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1433 GAGGAAACACAGAGAGAGAAAAGAAAGAGAGAGTAGGGAAGATGAAGACAGAAGAAGAAG 1492
Query 1433 aaaacgccgagaagagat-tcgagataaagagagtcgaagagagagagacgatgatgatc 1491
|| |||||| |||||| | | |||||||||||||||| |||||||||||||| |||||||
Sbjct 1493 AAGACGCCGTGAAGAG-TCTAGAGATAAAGAGAGTCGGAGAGAGAGAGACGAAGATGATC 1551
Query 1492 atcggagtcatagagattataaagagaggagaagagagagagacgatagacatggaagag 1551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1552 ATCGGAGTCATAGAGATTATAAAGAGAGGAGAAGAGAGAGAGACGATAGACATGGAAGAG 1611
Query 1552 acgcgagacatgagagaAGGGATAGGTGAA 1581
| || |||||||||||||||||||| ||||
Sbjct 1612 AAGCTAGACATGAGAGAAGGGATAGATGAA 1641
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78061847475
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5