BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474510
Length=1124
Score E
Sequences producing significant alignments: (Bits) Value
AT1G53760.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1808 0.0
> AT1G53760.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: mitochondrion, plasma membrane, plastid, membrane;
EXPRESSED IN: 25 plant structures; EXPRESSED DURING:
13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown
function DUF2343 (InterPro:IPR018786); Has 171 Blast hits
to 171 proteins in 90 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 127; Plants - 41; Viruses - 0; Other Eukaryotes
- 3 (source: NCBI BLink). | chr1:20068991-20071096
REVERSE LENGTH=1165
Length=1165
Score = 1808 bits (979), Expect = 0.0
Identities = 1082/1129 (96%), Gaps = 18/1129 (2%)
Strand=Plus/Plus
Query 1 GCGCCGCCGCTTCTTTTCGTCTTTCCTCGTGAAATATTTTAGGCTTTGTCGGTCTCATCG 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1 GCGCCGCCGCTTCTTTTCGTCTTTCCTCGTGAAATATTTTAGGCTTTGTCGG--TC-TCG 57
Query 61 CTATAATTACCTTAAAAAGTTTCGATTTTTCCTTTGAATATACATAAACCCACGTCGTTT 120
||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 58 ------TTACCTT--AAAGTTTCGATTTTTCCTTTGAATATAC-GAAACCCACGTCGTTT 108
Query 121 AAAGCAATACCCAGATGACAAATTAATAAATCCTAACTAAAGATCGGAGCTTTTTCGTAG 180
|||||||||||||||||||||||| | | || |||||||||||||||||||||||||||
Sbjct 109 AAAGCAATACCCAGATGACAAATTGACATTTCATAACTAAAGATCGGAGCTTTTTCGTAG 168
Query 181 TTAAGTGATCATGAGAGCGAGATTGGTGGTTTTCCCGATTAAAGGGAAGAAGTGGTGTTT 240
||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||
Sbjct 169 TTAAGTGATCATGAGAGCGAGATTGGTGGTTTTTCCGATCAAAGGGAAGAAATGGTGTTT 228
Query 241 CAGCAGATCTGTTGATCCTTTCGCTGCTCAATCACCGTCTGGTGTTACTCCGACCACTGT 300
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 229 CAGCAGATCTGTTGACCCTTTCGCTGCTCAATCACCGTCTGGTGTTACTCCGACCACTGT 288
Query 301 ACGAGGTTTATGGAAGAAAATATCATCTGAATCGAAACCCATCAATGCCAACGCGGAGCT 360
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 289 ACGAGGTTTATGGAAGAAGATATCATCTGAATCGAAACCCATCAATGCCAACGCAGAGCT 348
Query 361 TCTCGTCGATTTCATCTCTGACAAGATGAATAAAGCTTGGGTGGGTCTTGAGAAATCGCC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 349 TCTCGTCGATTTCATCTCTGACAAGATGAATAAAGCTTGGGTGGGTCTTGAGAAAGCGCC 408
Query 421 TGATGGATCAATAAAGAACAAGATTCATGGGTTTGGATTGAAGCTTCTGGCTCGTGTTAA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 409 TGATGGATCAATAAAGAACAAGATTCATGGGTTTGGATTGAAGCTTCTGGCTCGTGTTAA 468
Query 481 GCCATCTGAGATTTTCTTGAAGTCTATATCTAAGGAGGTCACTTCTGTACAAGTCACTTA 540
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 469 GCCTTCTGAGATTTTCTTGAAGTCTATATCTAAGGAGGTCACTTCTGTACAAGTCACTTA 528
Query 541 TCCTCCGAGTTTAGATCCTAGACTCGTACGTAGGAGACTACGGCACATTGCCATGAGTGG 600
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 529 TCCTCCGAGTTTAGATCCTAGACTCGTACGCAGGAGACTACGGCACATTGCCATGAGTGG 588
Query 601 AACAATCCTGCACAAGAAGTACCTAGTTGGTTCAGTAACTTTGCTTCCATTGACCAGTGC 660
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 589 AACAATCCTGCACAAGAAGTACCTAGTTGGTTCAGTTACTTTGCTTCCATTGACCAGTGC 648
Query 661 ATTCATGGTATTGCCATTACCAAACATACCATTCTTCTGGGTCTTATTCCGCACATATTC 720
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 ATTTATGGTATTGCCATTACCAAACATACCATTCTTCTGGGTCTTATTCCGCACATATTC 708
Query 721 TCACTGGAGGGCTCTTCAGGGAAGTGAGAAGCTGCTTAAGCTTATCTCAAACGAGTCAAA 780
||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 709 TCACTGGCGGGCTCTTCAGGGAAGTGAGAAGCTGCTTAAGCTCATCTCAAACGAGGCAAA 768
Query 781 TCCTGATAAATCAGACTCAACTGATGATGCAGATGAAAGCAAGAACAACAAGA--A-GCC 837
|||||||||| |||||||||||||||||||||||||||||||||||| ||| | | |||
Sbjct 769 TCCTGATAAACCAGACTCAACTGATGATGCAGATGAAAGCAAGAACAGCAACACCAAGCC 828
Query 838 GGAACAAAAAT-TGCAATCTCCCACATGTATTTTGCTTCCATCAGAAGAGTTATATCAGC 896
||||||||||| | ||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 829 GGAACAAAAATCT-CAATCTCCCACTTGTATTTTGCTTCCATCGGAAGAGTTATATCAGC 887
Query 897 TAATTCGTGAAGCTAGCGAGGAAGGACTCGACGAGGCGACCATAGTAGAGATTTGCAAAT 956
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 888 TAATTCGTGAAGCTAGCGAGGAAGGACTCGACGAGGCGACCATAATAGAGATTTGCAAAT 947
Query 957 CTTTTGATCTCAATAAGAACGATGTTCTTAAATATCGCAATCTAGTCTAACTATTTTGGC 1016
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 948 CCTTTGATCTCAATAAGAACGATGTTCTTAAATATCGCAATCTAGTCTAACTCTTTTGGC 1007
Query 1017 ATTTTAGGCTTCTTTTTTAGAACCTAATTTTAGCTGTTTGAAGCTATAACTTACGCTCCA 1076
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1008 ATTTTAGGCTTCTTTTTTAGAACATAATTTTAGCTGTTTGAAGCTATAACTTACGCTCCA 1067
Query 1077 ATTCttttttttttt-GTCTTTTGATTCCTTGTTGCTTTAAAAACTTCT 1124
||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1068 ATTCTTTTTTTTTTTTGTCTTTTGATTCCTTGTTGCTTTAAAAACTTCT 1116
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55120198410
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5