BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474511
Length=1856
Score E
Sequences producing significant alignments: (Bits) Value
AT1G53770.2 | Symbols: | O-fucosyltransferase family protein |... 2076 0.0
> AT1G53770.2 | Symbols: | O-fucosyltransferase family protein
| chr1:20071311-20073758 REVERSE LENGTH=2005
Length=2005
Score = 2076 bits (1124), Expect = 0.0
Identities = 1232/1286 (96%), Gaps = 0/1286 (0%)
Strand=Plus/Plus
Query 1 AACGACTGCGTTACTTCATCAATGGTGAAAGATTCCTCGTCGGTGTCTTCTTCGTCGTCA 60
||||||||||| ||||||||||||||||||| |||||||||| | ||||||| ||||||
Sbjct 30 AACGACTGCGTCACTTCATCAATGGTGAAAGTTTCCTCGTCGACGACTTCTTCATCGTCA 89
Query 61 TTGTCATCTCCAGATGAAGAAAGCGATCTCCACAATCTTCTCGATGAATCAGATTCTCAA 120
| |||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||
Sbjct 90 TCGTCATCTCCAGATGAAGAAAGCGATCTCCAGAATCTCCTCGAGGAATCAGATTCTCAA 149
Query 121 ATCGACCAATTTCGTGTAAGCGACGCGGCGGCTGAACAACGACCTACCTTCGATGTGGAG 180
||||||||||||||| | ||||||| |||||| || ||||||||||||||||||||||||
Sbjct 150 ATCGACCAATTTCGTATCAGCGACGAGGCGGCAGAGCAACGACCTACCTTCGATGTGGAG 209
Query 181 AGTCTCCGATCACGTTTACGACGGAGTTTTAAGCTCAATCTCACTAAGAAACAGTCCATT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 210 AGTCTCCGATCACGTTTACGACGGAGTTTTAAGCTCAATCTCACTAAGAAACAGTCCATT 269
Query 241 GTTATCTTCCTTCCTATCGTCATCATCCTCATTTACTTATCTACTGATTTCAGCAATTAC 300
|||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 270 TTTATCTTCCTCCCTATCGTCATCATCCTCATCTACTTATCTACCGATTTCAGCAATTAC 329
Query 301 TTCTCCGTCAGAGTTCCTGATTCTGTGTTCCGGTCAAATACATTAACGGGTCGGGCTCAT 360
|||||||||| ||||||| |||||| ||||||||||||||||||||||||||||| ||||
Sbjct 330 TTCTCCGTCAAAGTTCCTAATTCTGCGTTCCGGTCAAATACATTAACGGGTCGGGTTCAT 389
Query 361 GAATCGGATCTTCAAGCACTGTATCTTCTCAGGAAGCAAGAGAGCGATCTCTTCTCTACC 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 390 GAATCGGATCTTCAAGCACTGTATCTTCTCAGGAAGCAAGAGAGCGATCTCTTCTCTATC 449
Query 421 TGGAACCATACTTTATCGAATTTATCAACAATCGAAGACGTGAAGTCTGCAGTTTTCCGG 480
|||||||| ||| |||| ||||||||||| ||||| |||||||| |||||||||||||||
Sbjct 450 TGGAACCACACTGTATCAAATTTATCAACGATCGACGACGTGAAATCTGCAGTTTTCCGG 509
Query 481 CAGATTTCGTTGAATAGGCAGATCCAAAATGCATTACTCTCTCCGCATAAAACTGGAAAT 540
||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||
Sbjct 510 CAGATTTCGTTGAATAGACAGATCCAAAATGCATTACTATCGCCGCATAAAACTGGAAAT 569
Query 541 GTTGAAATCGGTGGTTCATCAGATGTTTACTTCGCCGGCGGAAGTTGCCGGAAAGTGGAT 600
||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 570 GTTGATATCGGTGGATCATCAGATGGTTACTTCGCCGGCGGAAGTTGCCGGAAAGTGGAT 629
Query 601 CAGAAGTTGAATGGGAGGAAGACGATTCAATGGAAGCCGAGACCGGATAAGTTTCTATTC 660
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 630 CAGAAGTTGAATGGGAGGAAGACGATTCAATGGAAGCCGAGGCCGGATAAGTTTCTATTC 689
Query 661 GCCATTTGTTTGTCTGGTCAAATGAGTAATCACTTGATTTGCTTGGAGAAGCATATGTTC 720
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 690 GCCATTTGTTTGTCTGGTCAAATGAGTAACCACTTGATTTGCTTGGAGAAGCATATGTTC 749
Query 721 TTTGCAGCATTGCTGAAACGCGTTCTTGTGATCCCTAGTCATAGATTTGATTACCATTAC 780
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 750 TTTGCAGCATTGCTGAAACGTGTTCTTGTGATCCCTAGTCATAGATTTGATTATCATTAC 809
Query 781 AGTAGAATTATCGATATTGATCGAATCAATACTTGTTTGGGGAGGAATGTAGTGGTTTCT 840
|||||||| |||||||||||||||||||||||||||||||| |||| ||| |||||||||
Sbjct 810 AGTAGAATCATCGATATTGATCGAATCAATACTTGTTTGGGAAGGACTGTTGTGGTTTCT 869
Query 841 TTTGAGGAGTTTTGGAAGAAGGATAAGAATAGGAAGAAGCATCATCATGTTCATATTAAT 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 870 TTTGAGGAGTTTTGGAAGAAGGATAAGAATAGGAAGAAGCATCATCATGTTCATATTAAT 929
Query 901 AGATTCATATGCTACTTCTCGAAACCGGAACCGTGTTATGTAGATAAAGAGCATATTACA 960
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 930 AGATTCATATGTTACTTCTCGAAACCGGAACCGTGTTATGTAGATAAAGAGCATATTACA 989
Query 961 AAGTTAAAAGCTTTGGGGATCACTATTGGAGGGAAGCTAGACACACCATGGGAAGAAGAT 1020
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 990 AAGTTGAAAGCTTTGGGGATCACTGTTGGAGGGAAGCTAGACACACCATGGGAAGAAGAT 1049
Query 1021 ATTGCGAGTCCAAGCAACAAGACAGCTGAGGAAGTGGAGACTAATTTCAGATCAGATGAC 1080
|||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 1050 ATTGCGAGGCCAAGCAACAAGACAGCTGAGGAAGTGGAGGCTAATTTTAGATCAGATGAC 1109
Query 1081 GATGTTATTGCGATTGGGGATGTGTTCTATGCTAATGTTGAGAGAGAGTGGGTGATGCAG 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1110 GATGTTATTGCGATTGGGGATGTGTTCTATGCTAATGTTGAGAGAGAGTGGGTGATGCAG 1169
Query 1141 CCTGGTGGTCCTGTGGCTCACAAGTGCAGGACTTTGATTGAACCAAACCGGCTTATTTTG 1200
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1170 CCTGGTGGTCCTGTTGCTCACAAGTGCAGAACTTTGATTGAACCAAACCGGCTTATTTTA 1229
Query 1201 CTCACTGCACAGAGATTTATCCAGACTTTCCTTGGCAAGAACTACATTGCTCTTCATTTC 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1230 CTCACTGCACAGAGATTTATCCAGACTTTCCTTGGCAAGAACTACATTGCTCTTCATTTC 1289
Query 1261 CGTAGGCATGGATTCTTGAAGTTTTG 1286
|| |||||||||||||||||||||||
Sbjct 1290 CGCAGGCATGGATTCTTGAAGTTTTG 1315
Score = 856 bits (463), Expect = 0.0
Identities = 540/575 (94%), Gaps = 13/575 (2%)
Strand=Plus/Plus
Query 1286 GTAATGCCAAGAATCCAAGTTGCTTTTACCCCATTCCTCAAGCTGCTAACTGCATCACTC 1345
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 1429 GTAATGCCAAGAATCCAAGTTGCTTTTTCCCCATTCCTCAAGCTGCTAGCTGCATCACTC 1488
Query 1346 GACTGATTGAGAAGGTCGAGGCACCAGTTATATACCTTTCTACTGATGCAGCCGAAAGCG 1405
| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 1489 GTCTGATTGAGAAGGTCGAGGCACCGGTTTTATACCTTTCTACTGATGCAGCCGAAAGCG 1548
Query 1406 AAACTGGTCTGCTACAATCGCTGTTGATCCTGAATGGAAAGACTATCCCCCTTGTGAAGC 1465
||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||| |
Sbjct 1549 AAACTGGTCTGCTACAATCACTGTTGATACTGAATGGAAAGACTGTCCCCCTTGTGAAAC 1608
Query 1466 GACCAGCTCGTGATTCAGCTGAGAAATGGGATGCATTGTTATACAGACATGGTCTCGAGG 1525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1609 GACCAGCTCGTGATTCAGCTGAGAAATGGGATGCATTGTTATACAGACATGGTCTCGAGG 1668
Query 1526 GTGACTCACAGGTGGAAGCAATGTTGGATAAGACGATATGCGCAATGTCAAGCGTGTTCA 1585
| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1669 GCGACTCACAGGTGGAAGCAATGTTGGATAAGACGATATGCGCATTGTCAAGCGTGTTCA 1728
Query 1586 TTGGTGCCTCGGGTTCCACTTTTACAGAGGATATCCTCAGACTCAGAAAAGATTGGGGAA 1645
||||||||||||| || |||||||||||||||||| | ||||||||||||||||||||||
Sbjct 1729 TTGGTGCCTCGGGCTCAACTTTTACAGAGGATATCTTAAGACTCAGAAAAGATTGGGGAA 1788
Query 1646 CCGCTTCAGAATGCGATGAGTATCTCTGCGCAAACGAGCAGCCTAATTTTGTAGCAGATC 1705
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1789 CCGCTTCAGAATGCGATGAGTATCTCTGCGCAAACGAGCAGCCTAATTTTATAGCAGATC 1848
Query 1706 ATGAATAAAA-GATTAACACGCAAACTAGTCTCTGTCTTGTGATTGTGAGTTCTCATCAT 1764
|||||||||| |||||||||| ||| ||||||||||||||||| || | |||||||
Sbjct 1849 ATGAATAAAAAGATTAACACGTAAATTAGTCTCTGTCTTGTGA--GT---T-CTCATCAC 1902
Query 1765 AAA-CAGCCTAATTCTCTTCCTCTTT-TGTGCATAGTTTACTAGTGATGTATATCATACA 1822
||| |||||||||| ||||| ||||| ||||||||||||||||||| | ||||||||||
Sbjct 1903 AAAACAGCCTAATTGTCTTCTTCTTTATGTGCATAGTTTACTAGTG-T--ATATCATACA 1959
Query 1823 ATAAA-GCCATGCTACAGTTTCTTCTAATATAATC 1856
|||| |||||||||||||||||||||||||||||
Sbjct 1960 GTAAAAGCCATGCTACAGTTTCTTCTAATATAATC 1994
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91866997350
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5