BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474512
Length=1999
Score E
Sequences producing significant alignments: (Bits) Value
AT1G53800.2 | Symbols: | unknown protein; BEST Arabidopsis tha... 3018 0.0
AT1G53801.1 | Symbols: | other RNA | chr1:20083211-20084173 RE... 449 4e-125
> AT1G53800.2 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G53250.1);
Has 35333 Blast hits to 34131 proteins in 2444 species: Archae
- 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants
- 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI
BLink). | chr1:20081699-20084500 FORWARD LENGTH=2018
Length=2018
Score = 3018 bits (1634), Expect = 0.0
Identities = 1903/2027 (94%), Gaps = 41/2027 (2%)
Strand=Plus/Plus
Query 1 TTGTGTGGCTTATCCTTGTCTGTCTTAAATTCCTGCAAAAACCCTAACCTCTCT-ATGAC 59
|||||||||||||||||||||||| |||||||||||||||| || ||||||| | |||
Sbjct 5 TTGTGTGGCTTATCCTTGTCTGTC--AAATTCCTGCAAAAACTCTCGCCTCTCTCA-GAC 61
Query 60 AAGTAGAGTGTTTTGTCCAAGTTTCTTCTCtttttttttCGTTTTCCTGGGCTGAATGAG 119
||| |||||| || || |||||||||| | |||||||||||||||| |||||||||
Sbjct 62 AAGAAGAGTG--TT-TCAAAGTTTCTTC-C----TTTTTCGTTTTCCTGGTCTGAATGAG 113
Query 120 CTCCCAATGCCTTCTTTAGGTACCTTTTCTGATATTGCTACTATCCAACCTTCCTTGCAA 179
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 114 CTCCCAATGCCTTCTTTAGGTACCTTTTCTGATATTGCTACTATCCAACCTTCATTTCAA 173
Query 180 GCTCATCTTGTTCCATTGGGGGCTCAGAGTATTATCCATGCTAAAACTCTACCTAATCCA 239
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 174 GCTCATCTTGTTCCATTGGGGGCTCAGAGTATTATCCATGCTAAAAGTCTACCTAATCCA 233
Query 240 TGGAGACAATCCTGTTTCTCCAAGAATTTGAAATTTTACACGGGCCAT-GCTCATGTCCG 298
|||||||| || |||||||||||||||||||||||||||||||| ||| | |||||||||
Sbjct 234 TGGAGACAGTCTTGTTTCTCCAAGAATTTGAAATTTTACACGGGTCATAG-TCATGTCCG 292
Query 299 AAGAGGCAAAGTCCTTATTACTGCAGTGGCCACTCTTGAAACGAAGTATCCGGCTCAAAA 358
|||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 293 AAGAGGAAAAGTTCTTATTACTGCAGTGGCCACTCTTGAAACCAAGTATCCGGCTCAAAA 352
Query 359 AGAAAACGAACAGAGCTCTTCTTTGTCTTCTGCTTCTTCAAAATCCTCAGATGGAAGTGC 418
||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 353 AGAAAACGAACGGAGCTCTTCTTTGTCTTCTGCTTCTTCGAAATCCTCAAATGGAAGTGC 412
Query 419 TGATGATGGC---G---AAGTGGATGACAGAGAAAAGTTGAGAAGGATGAGGATTTCTAA 472
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 TGATGATGGCGAAGAACAAGTGGATGACAGAGAAAAGTTGAGAAGGATGAGGATTTCTAA 472
Query 473 GGCAAATAGAGGGAACACTCCTTGGAACAAAGGCAGGAAGCATAGTCCGGAGACCCTACA 532
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 473 GGCAAATAGAGGGAACACTCCTTGGAACAAAGGCAGGAAGCATAGTCCAGAGACCCTACA 532
Query 533 GAAGATTAGAGAAAGGACAAAGATTGCAATGCAAGACCCAAAGATCAAGCTGAAATTAGC 592
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 533 GAAGATTAGAGAAAGGACAAAGATTGCAATGCAAGACCCAAAGATCAAGATGAAATTAGC 592
Query 593 GAATCTTGGACACGCACAAAACAAGGAGACACGGATGAAGATTGGGGAGGGAGTGCGGAT 652
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 593 GAATCTTGGGCACGCACAAAACAAGGAGACACGGATGAAGATTGGAGAGGGAGTGCGGAT 652
Query 653 GCGATGGGCAAGGCGGAAGGAAAGGAGAAAAGTGCAGGAGACATGTCATTTCGAGTGGCA 712
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 653 GCGATGGGCAAGGAGGAAGGAGAGGAGAAAAGTGCAGGAGACATGTCATTTCGAGTGGCA 712
Query 713 AAACTTGTTAGCGGAGGCTGCTAAAGAAGGATATAGAGACGAAGAAGAGCTTCAGTGGGA 772
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 713 AAACTTGTTAGCGGAGGCTGCTAAACAAGGATATACAGACGAAGAAGAGCTTCAGTGGGA 772
Query 773 TTCTTACAAAATCTTGGATCAACAGAATCAACTGGAATGGCTGGAAAGTGTTGAGCAGAG 832
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 773 TTCTTACAACATCTTGGATCAACAGAATCAACTGGAATGGCTGGAAAGTGTTGAGCAGAG 832
Query 833 GAAAGCCGCTAAAGGAGCTAAAAGTAACAGAAGAGCGCCAAAATCTCCTGAACAAAGAAG 892
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 GAAAGCCATTAAAGGAGCTAAAAGTAACAGAAGAGCGCCAAAATCTCCTGAACAAAGAAG 892
Query 893 GAGAATTGCAGAAGCAATAGCTGCTAAATGGGCTGATCCATCTTACCGTGAAAGAGTTTG 952
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 893 GAGAATTGCAGAAGCAATAGCTGCTAAATGGGCTGATCCATCTTACCGTGAAAGAGTTTG 952
Query 953 CTCTGGCTTGGCAAAATATCACGGTATACCTGTTGGTGTCGAGAGGCGTCGTAGAAGACC 1012
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 953 CTCCGGCTTGGCAAAATATCACGGTATACCTGTTGGTGTCGAGAGGCGTCGTAGAAGACC 1012
Query 1013 AAGGACCGATGCTGAACCTAGAAAGAAGAATCCTACAAAGAAAAGTACAAGGGATTCAGA 1072
||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1013 AAGGAGCGATGCAGAACCTAGAAAGAAGACTCCTACAAAGAAAAGTACAAGGGATTCAGA 1072
Query 1073 GTTTGAACGGCAAAGCCAAGTTCAAGTAGTGAAAGTACGGAAGCGCAAAACACCTGTGTA 1132
||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||| |||
Sbjct 1073 GTTTGAACGTCAAAGCCAAGTTCAAGTGGTGAAAGTAAGGAAGCGCAAAACACCTGCGTA 1132
Query 1133 TAAAGACCCTTTGGCAAGTTCTAAACTGGAAATGATAAAAAGCATCAGAGCAAAACGAGT 1192
|||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1133 TAAAGATCCTTTGGCAAGTTCAAAACTGGAAATGATCAAAAGCATCAGAGCAAAACGAGT 1192
Query 1193 GGCTGAAGAATCGAAGAAGATGGATGCTGTAGAACGAGCAAGGCTTCTGATCTCGGAAGC 1252
||| |||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 1193 GGCGGAAGAATCAAAGAAGATGGATGCTGTGGAACGAGCAAGGCTTTTGATCTCGGAAGC 1252
Query 1253 TGAGAAAGCTGCGAAAGTCCTTGAGATTGCTGCTTTGAAAAGCCCGGTTGCTCAAGCATC 1312
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1253 TGAGAAAGCTGCGAAAGTCCTCGAGATTGCTGCTTTGAAAAGCCCGGTTGCTCAAGCATC 1312
Query 1313 TTTGTTAGAGAGTAAAAAGCTCATAGCAGAAGCAACACAACTGATTGAATCTCTAGAGAT 1372
||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1313 GTTGTTAGAGAGTAAAAAGCTCATAGCAGAAGCAACACAACTGATTAAATCTTTAGAGAT 1372
Query 1373 GAGGCAGATAGCTTCAGATGAAGATGGGACTTACCCATCTT-TTCTCTCACCTCAGCATA 1431
|||||||||||||||||||||||||||||||||||||| || |||| |||||||||| ||
Sbjct 1373 GAGGCAGATAGCTTCAGATGAAGATGGGACTTACCCAT-TTCTTCTTTCACCTCAGCCTA 1431
Query 1432 ATAACAGTGAATCCGAAACCAAAGATACAAACGATCAAGAACAACAAGGAGAGATTAACG 1491
|| |||||||||| |||||||||||||||||||||||||||| || |||||||||||| |
Sbjct 1432 ATGACAGTGAATCTGAAACCAAAGATACAAACGATCAAGAACGACCAGGAGAGATTAATG 1491
Query 1492 GAACACACACATTCCCGATCAACGGAGAGAGTCTTCACTTGAACATGAGATCTAGCGATT 1551
||||||||||||| | |||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 1492 GAACACACACATTGCAGATCAACGGAGAGAGTCTTCACATGAACATGAGATCTAACGATT 1551
Query 1552 TACCGACATTCAACATAGAAGGTACTACAAATCAGTCTATTTCTGATAAGGAATCCAACA 1611
||||||| ||| ||||||||||||||||| |||| | ||||||||| |||||||||||
Sbjct 1552 TACCGACTTTCGTTATAGAAGGTACTACAAACCAGTTTGTTTCTGATATGGAATCCAACA 1611
Query 1612 CATCCCAGGGAGATAGAGAAGATATCAAACTCGGGATAGTTTCGCAACCAAACGGAACCA 1671
||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 1612 CATCCCAAGGAGGTAGAGAAGATATCAAACTCGGGATAGTTGGGCAACCAAACGGAACGA 1671
Query 1672 GAGTCCATCCACCAGCAGAGTCTAATGGAGCTATCAGTCTTGCTGAGAATCATCCTCTTC 1731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1672 GAGTCCATCCACCAGCAGAGTCTAATGGAGCTATCAGTCTTGCTGAGAATCATCCTCTTC 1731
Query 1732 CGAATGGTTACCACGGGATGGACGACAAGGCTATATCTTTGGAATCAGGAAACGTAACGA 1791
| ||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||
Sbjct 1732 CAAATGGTTACCACGGGATTGACGAAAAGGCTGCATCTTTGGAATCAGGAAACGTAACGA 1791
Query 1792 AGAAGTGGGTTCGTGGAAGACTCGTCGAAGTCACAGAAGCAGCCTAATGTTGTAGCGATT 1851
||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||
Sbjct 1792 AGAAGTGGGTTCGTGGAAGGCTCGTCGAAGTCACAGAAGCAGCCTAATGTCGTAGCAATT 1851
Query 1852 TAGCAGAGAAAAGTCGTATTTT-CAGTTAGTGATTCAAAATTTTGGCTTATAT---G--C 1905
||||||||||||||| |||||| || ||||| ||||||||||||||||||||| | |
Sbjct 1852 TAGCAGAGAAAAGTCATATTTTTCAATTAGTAATTCAAAATTTTGGCTTATATATTGGTC 1911
Query 1906 TT---------G----AGAGAAGCAGTTTCCAGTTTGTGATGTGCCAATTGTATCTATAA 1952
|| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1912 TTATCTCTTATGCTTGAGAGAAGCAGTTTCCAGTTTGTGATGTGCCAATTGTATCTATAA 1971
Query 1953 CTCAATTGTATGTCAGAGTTTCAGCTTAGTAAACAATTCTTCATAGC 1999
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1972 CTCAATTGTATGTCAGAGTTTCAGCTTAGTAAACAATTCTTCATAGC 2018
> AT1G53801.1 | Symbols: | other RNA | chr1:20083211-20084173
REVERSE LENGTH=630
Length=630
Score = 449 bits (243), Expect = 4e-125
Identities = 296/321 (92%), Gaps = 5/321 (2%)
Strand=Plus/Minus
Query 1125 CCTGTGTATAAAGACCCTTTGGCAAGTTCTAAACTGGAAATGATAAAAAGCATCAGAGCA 1184
|||| ||||||||| |||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 480 CCTGCGTATAAAGATCCTTTGGCAAGTTCAAAACTGGAAATGATCAAAAGCATCAGAGCA 421
Query 1185 AAACGAGTGGCTGAAGAATCGAAGAAGATGGATGCTGTAGAACGAGC-AAGGCTTCTGAT 1243
||||||||||| |||||||| ||||||||||||||| | || | |||||| ||||
Sbjct 420 AAACGAGTGGCGGAAGAATCAAAGAAGATGGATGCT-TTTCTCG-CCTCAGGCTTTTGAT 363
Query 1244 CTCGGAAGCTGAGAAAGCTGCGAAAGTCCTTGAGATTGCTGCTTTGAAAAGCCCGGTTGC 1303
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 362 CTCGGAAGCTGAGAAAGCTGCGAAAGTCCTCGAGATTGCTGCTTTGAAAAGCCCGGTTGC 303
Query 1304 TCAAGCATCTTTGTTAGAGAGTAAAAAGCTCATAGCAGAAGCAACACAACTGATTGAATC 1363
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 302 TCAAGCATCGTTGTTAGAGAGTAAAAAGCTCATAGCAGAAGCAACACAACTGATTAAATC 243
Query 1364 TCTAGAGATGAGGCAGATAGCTTCAGATGAAGATGGGACTTACCCATCTT-TTCTCTCAC 1422
| ||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||
Sbjct 242 TTTAGAGATGAGGCAGATAGCTTCAGATGAAGATGGGACTTACCCAT-TTCTTCTTTCAC 184
Query 1423 CTCAGCATAATAACAGTGAAT 1443
|||||| |||| |||||||||
Sbjct 183 CTCAGCCTAATGACAGTGAAT 163
Score = 220 bits (119), Expect = 3e-56
Identities = 147/161 (91%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 1531 TGAACATGAGATCTAGCGATTTACCGACATTCAACATAGAAGGTACTACAAATCAGTCTA 1590
||||||||||||||| |||||||||||| ||| ||||||||||||||||| |||| |
Sbjct 161 TGAACATGAGATCTAACGATTTACCGACTTTCGTTATAGAAGGTACTACAAACCAGTTTG 102
Query 1591 TTTCTGATAAGGAATCCAACACATCCCAGGGAGATAGAGAAGATATCAAACTCGGGATAG 1650
||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 101 TTTCTGATATGGAATCCAACACATCCCAAGGAGGTAGAGAAGATATCAAACTCGGGATAG 42
Query 1651 TTTCGCAACCAAACGGAACCAGAGTCCATCCACCAGCAGAG 1691
|| ||||||||||||||| |||||||||||||||||||||
Sbjct 41 TTGGGCAACCAAACGGAACGAGAGTCCATCCACCAGCAGAG 1
Score = 191 bits (103), Expect = 3e-47
Identities = 138/153 (90%), Gaps = 10/153 (7%)
Strand=Plus/Minus
Query 904 AAGCAATAGCTGCTAAATGGGCTGATCC----A--TCT-TA--C-CGTGAAAGAGTTTGC 953
|||||||||||||||||||||||||||| | | | || | |||||||||||||||
Sbjct 630 AAGCAATAGCTGCTAAATGGGCTGATCCAGTAAGTTGTCTAGTCACGTGAAAGAGTTTGC 571
Query 954 TCTGGCTTGGCAAAATATCACGGTATACCTGTTGGTGTCGAGAGGCGTCGTAGAAGACCA 1013
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 570 TCCGGCTTGGCAAAATATCACGGTATACCTGTTGGTGTCGAGAGGCGTCGTAGAAGACCA 511
Query 1014 AGGACCGATGCTGAACCTAGAAAGAAGAATCCT 1046
|||| |||||| |||||||||||||||| ||||
Sbjct 510 AGGAGCGATGCAGAACCTAGAAAGAAGACTCCT 478
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99045675285
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5