BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474517
Length=974
Score E
Sequences producing significant alignments: (Bits) Value
AT1G53850.1 | Symbols: PAE1, ATPAE1 | 20S proteasome alpha subu... 1520 0.0
AT3G14290.1 | Symbols: PAE2 | 20S proteasome alpha subunit E2 |... 869 0.0
> AT1G53850.1 | Symbols: PAE1, ATPAE1 | 20S proteasome alpha subunit
E1 | chr1:20103953-20106015 REVERSE LENGTH=1027
Length=1027
Score = 1520 bits (823), Expect = 0.0
Identities = 920/966 (95%), Gaps = 9/966 (1%)
Strand=Plus/Plus
Query 12 GGGTTTTGATTCCGTTGTGCGAAAGAC-TT-AGAGGTTTTGCAGATCGAAATCGCAAAAG 69
||||||||||||||||||||||| ||| || ||||||||||||||||||||||| || ||
Sbjct 67 GGGTTTTGATTCCGTTGTGCGAAGGACTTTAAGAGGTTTTGCAGATCGAAATCGGAAGAG 126
Query 70 AAGAAGAAGATGTTTCTCACTAGAACTGAGTATGACAGAGGAGTCAACACTTTTTCTCCA 129
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 127 AAGAAGAAGATGTTTCTCACTAGAACTGAGTATGACAGAGGAGTGAACACTTTTTCTCCA 186
Query 130 GAAGGAAGGCTGTTTCAAGTGGAATATGCCATTGAAGCTATCAAGCTTGGTTCTACTGCA 189
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 187 GAAGGAAGGCTATTTCAAGTGGAATATGCCATTGAAGCTATCAAGCTTGGTTCTACTGCA 246
Query 190 ATTGGAGTAAAGACAAAAGAAGGAGTTGTGCTCGCTGTTGAGAAGCGTATCACTTCGCCA 249
|||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||
Sbjct 247 ATTGGAGTAAAGACAAAAGAAGGAGTTGTGCTTGCTGTCGAGAAGCGTATCACGTCGCCA 306
Query 250 TTGCTGGAACCGAGCAGTGTGGAGAAGATTATGGAAATTGATGACCATATTGGTTGTGCT 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 307 TTGCTGGAACCGAGCAGTGTGGAGAAGATTATGGAAATTGATGACCATATTGGTTGTGCT 366
Query 310 ATGAGCGGTTTAATTGCTGATGCGCGAACACTTGTTGAGCATGCTAGAGTTGAGACTCAA 369
|||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||
Sbjct 367 ATGAGCGGTTTAATTGCTGACGCGCGCACACTTGTTGAGCATGCTAGAGTTGAAACTCAA 426
Query 370 AACCATAGATTCTCGTACGGTGAGCCGATGACTGTAGAGTCCACAACACAAGCGCTGTGT 429
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 427 AACCATAGATTCTCGTATGGTGAGCCGATGACTGTAGAGTCCACAACACAAGCACTGTGT 486
Query 430 GATCTGGCTTTACGATTTGGTGAAGGAGATGAAGAATCAATGTCTCGTCCATTTGGAGTA 489
|||||||||||||| |||||||||||||| ||||||||||||||||| || |||||||||
Sbjct 487 GATCTGGCTTTACGGTTTGGTGAAGGAGAGGAAGAATCAATGTCTCGGCCGTTTGGAGTA 546
Query 490 TCACTTCTCATTGCTGGTCATGATGAAAACGGACCAAGCTTGTACTACACAGATCCTTCA 549
|| |||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||
Sbjct 547 TCTCTTCTCATTGCTGGCCATGATGAAAATGGACCAAGCTTGTACTACACTGATCCTTCA 606
Query 550 GGAACATTCTGGCAGTGCAATGCAAAGGCAATTGGTTCAGGGTCAGAAGGAGCTGATAGC 609
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 607 GGAACATTCTGGCAGTGCAATGCAAAGGCAATTGGTTCAGGTTCTGAAGGAGCTGATAGC 666
Query 610 TCTCTTCAAGAGCAATTTAACAAAGATTTGTCTCTACAAGAAGCTGAGACTATCGCTGTA 669
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 TCTCTTCAAGAGCAATTCAACAAAGATTTGTCTCTACAAGAAGCTGAGACTATCGCTGTA 726
Query 670 TCTATCCTCAAGCAAGTTATGGAAGAAAAGGTGACTCCAAATAATGTGGATATTGCCAAG 729
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 727 TCTATCCTAAAGCAAGTTATGGAAGAAAAGGTGACTCCAAATAACGTGGATATTGCCAAG 786
Query 730 GTAGCACCAGCTTATCATCTCTACACTCCCCAAGAAGTCGAAGCAGTCATCGCTCGTCTA 789
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 787 GTAGCACCAGCTTATCATCTCTACACTCCACAAGAAGTCGAAGCAGTCATCGCTCGTCTT 846
Query 790 TGATGGAAAAATCTCAATTTGGGTAATTTACCTATCCGCTTGTGTCCCAAAACTTGTTAC 849
|||| |||||| |||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 847 TGATTGAAAAAACTCAATTTGGGTAATTTACCTATCAGCTTGTGTCACAAAACTTGTTAC 906
Query 850 TTTTGTCTGTTAGATTGAGGATTCATATCAGATTTTTAGTCTGTTGTGTAAGAGAATCTT 909
|||||||||||||||||||||| ||| ||| ||||| |||| ||||||||||||||||||
Sbjct 907 TTTTGTCTGTTAGATTGAGGAT-CATGTCACATTTT-AGTCGGTTGTGTAAGAGAATCTT 964
Query 910 TTGTTTGTCTCCCATGTCATTCAATAACCTCTCGGATTTGTGA-TTAGAAAATTTCCTTT 968
||| | |||||||||||||||||||||| |||||||||||| ||| ||||||||||||
Sbjct 965 TTG---G-CTCCCATGTCATTCAATAACCTTTCGGATTTGTGACTTATAAAATTTCCTTT 1020
Query 969 CCTACC 974
||||||
Sbjct 1021 CCTACC 1026
> AT3G14290.1 | Symbols: PAE2 | 20S proteasome alpha subunit E2
| chr3:4764149-4766586 FORWARD LENGTH=1031
Length=1031
Score = 869 bits (470), Expect = 0.0
Identities = 640/724 (88%), Gaps = 4/724 (1%)
Strand=Plus/Plus
Query 71 AGAAGAAGATGTTTCTCACTAGAACTGAGTATGACAGAGGAGTCAACACTTTTTCTCCAG 130
|||||||||||||||||||||| ||||||||||||||||||||||| || |||||||| |
Sbjct 105 AGAAGAAGATGTTTCTCACTAGGACTGAGTATGACAGAGGAGTCAATACATTTTCTCCTG 164
Query 131 AAGGAAGGCTGTTTCAAGTGGAATATGCCATTGAAGCTATCAAGCTTGGTTCTACTGCAA 190
|||| | || ||||| || || ||||||||||||||||||||||||||||||||||| |
Sbjct 165 AAGGTCGTCTCTTTCAGGTTGAGTATGCCATTGAAGCTATCAAGCTTGGTTCTACTGCTA 224
Query 191 TTGGAGTAAAGACAAAAGAAGGAGTTGTGCTCGCTGTTGAGAAGCGTATCACTTCGCCAT 250
|||| |||||||| ||||| |||||||| || || || ||||||||||| |||||||| |
Sbjct 225 TTGGTGTAAAGACGAAAGAGGGAGTTGTTCTTGCAGTCGAGAAGCGTATTACTTCGCCTT 284
Query 251 TGCTGGAACCGAGCAGTGTGGAGAAGATTATGGAAATTGATGACCATATTGGTTGTGCTA 310
| ||||| ||||| ||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 285 TACTGGAGCCGAGTAGTGTTGAGAAGATTATGGAAATTGATGACCATATAGGTTGTGCTA 344
Query 311 TGAGCGGTTTAATTGCTGATGCGCGAACACTTGTTGAGCATGCTA-GAGTTGAGACTCAA 369
|||| ||| | |||||||| ||||||||||||||||||||||| | |||| ||||| ||
Sbjct 345 TGAGTGGTCTGATTGCTGACGCGCGAACACTTGTTGAGCATGC-ACGAGTAGAGACCCAG 403
Query 370 AACCATAGATTCTCGTACGGTGAGCCGATGACTGTAGAGTCCACAACACAAGCGCTGTGT 429
||||| || |||||||| |||||||| ||||||||||| || ||||||||||| |||||
Sbjct 404 AACCACAGGTTCTCGTATGGTGAGCCAATGACTGTAGAATCTACAACACAAGCTTTGTGT 463
Query 430 GATCTGGCTTTACGATTTGGTGAAGGAGATGAAGAATCAATGTCTCGTCCATTTGGAGTA 489
||||| |||||||| |||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 464 GATCTTGCTTTACGGTTTGGTGAAGGAGAGGAAGAGTCAATGTCTCGTCCATTTGGAGTA 523
Query 490 TCACTTCTCATTGCTGGTCATGATGAAAACGGACCAAGCTTGTACTACACAGATCCTTCA 549
|| |||||||||||||| ||||||||||| ||||| ||| |||||||||||||||| ||
Sbjct 524 TCCCTTCTCATTGCTGGGCATGATGAAAATGGACCGAGCCTGTACTACACAGATCCATCG 583
Query 550 GGAACATTCTGGCAGTGCAATGCAAAGGCAATTGGTTCAGGGTCAGAAGGAGCTGATAGC 609
|||||||||||||| |||||||||||||||||||| || || |||||||||||||||||
Sbjct 584 GGAACATTCTGGCAATGCAATGCAAAGGCAATTGGGTCTGGCTCAGAAGGAGCTGATAGT 643
Query 610 TCTCTTCAAGAGCAATTTAACAAAGATTTGTCTCTACAAGAAGCTGAGACTATCGCTGTA 669
||||| ||||||||||| ||||| ||| | |||| ||||||||||| || || ||||||
Sbjct 644 TCTCTCCAAGAGCAATTCAACAAGGATATAACTCTTCAAGAAGCTGAAACAATAGCTGTA 703
Query 670 TCTATCCTCAAGCAAGTTATGGAAGAAAAGGTGACTCCAAATAATGTGGATATTGCCAAG 729
|||||||| |||||||| ||||||||||||||||||||||| ||||| || ||||||||
Sbjct 704 TCTATCCTAAAGCAAGTAATGGAAGAAAAGGTGACTCCAAACAATGTCGACATTGCCAAA 763
Query 730 GTAGCACCAGCTTATCATCTCTACACTCCCCAAGAAGTCGAAGCAGTCATC-GCTCGTCT 788
|| |||||||||||||| ||||||||||| || || || ||||| |||||| | ||||||
Sbjct 764 GTCGCACCAGCTTATCACCTCTACACTCCTCAGGAGGTTGAAGCCGTCATCAG-TCGTCT 822
Query 789 ATGA 792
||||
Sbjct 823 ATGA 826
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47672205503
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5