BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474518
Length=1446
Score E
Sequences producing significant alignments: (Bits) Value
AT1G53860.1 | Symbols: | Remorin family protein | chr1:2010710... 2239 0.0
> AT1G53860.1 | Symbols: | Remorin family protein | chr1:20107107-20109511
REVERSE LENGTH=1440
Length=1440
Score = 2239 bits (1212), Expect = 0.0
Identities = 1371/1448 (95%), Gaps = 10/1448 (1%)
Strand=Plus/Plus
Query 1 caactaaaccaaaataaaccaacagtagtagaaacaaaacaaaagaaaacTCTATGGACA 60
||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||
Sbjct 1 CAACTAAACCAAAATAATCCAACAGTGGTAGAAACAAAACAAAAGAAAACTCCATGGACT 60
Query 61 TCACAAGAAACAGCAACACCAAGCTCCATCTCCAAACTCAGCTTCTGTTTCCTCCTAAGA 120
|||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
Sbjct 61 TCACAAGAAACAGCAACACCAAGCTCCATCCCCAAACTCAGCTTCTGTTTCCCCCTAATA 120
Query 121 TGGAGAAAACCTCAAATGTTAGCACAAATCCATTTGGAGAAGATTCACTTGCAAACAGAA 180
||||||||| ||||||||||||| | || ||||||| |||||| |||||| ||| |||||
Sbjct 121 TGGAGAAAAACTCAAATGTTAGCGCCAACCCATTTGCAGAAGACTCACTTACAAGCAGAA 180
Query 181 TCAACCTAAAGGAAACTACAGATTTCATAAAGTCACTGCCAATTTCATCAAACCAAAGCA 240
|||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 181 TCAATCTAAAGGAAACTACAGATTTCATCAAGTCACTTCCAATTTCATCAAACCAAAGCA 240
Query 241 GTAGCAGTAGCAGCAGCAGTGAGATGTTAAACGAGAGAAGACCAAGTGTCTCATCGCAAA 300
|| |||||||||| | ||||||| |||||||||||||||||||| ||||||| ||||
Sbjct 241 GT---AGTAGCAGCA--A-TGAGATGGTAAACGAGAGAAGACCAAGTTTCTCATCACAAA 294
Query 301 AGAGCATTGGAGAAGGAAGAAGCAATGGACAGAGAAGATTGATGTTAATGGAGTCTCCTT 360
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 295 AGAGCATTGGAGAAGGAAGAAGCAATGGACAAAGAAGATTGATGTTAATGGAGTCTCCTT 354
Query 361 GTACTCCAGGTAGAGGAGTCTTCAGTTTCAGTAGCAATGTCTCTGGTAGAAGAAGAAACT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 GTACTCCAGGTAGAGGAGTCTTCAGTTTCAGTAGCAATGTCTCTGGTAGAAGAAGAAACT 414
Query 421 TTCCTTCTAAATGGATTGATGCTGAGAAATGGGTCACTTCCTCCGGTCATGATTCTCCAG 480
| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 415 TCCCTTCTAAATGGATTGATGCTGAGAAATGGGTCACTTCCTCTGGTCATGACTCTCCAG 474
Query 481 CACATTCCCTCAAAAACACCCAATTTGATGGGTTCAAACACCAGGTGGAAGTTGTTTATT 540
||||||| |||||||||| ||||||||||||||| |||||||||||||||||||| || |
Sbjct 475 CACATTCTCTCAAAAACAACCAATTTGATGGGTTTAAACACCAGGTGGAAGTTGTATACT 534
Query 541 CAGAGAAATCTAGGGTTACGGAAGAATGTTTCCATGGATCTGTCTCATTATCTCCACAAG 600
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 535 CAGAGAAATCTAGGGTTACAGAAGAATGTTTCCATGGATCTGTCTCATTATCTCCACAAG 594
Query 601 ATCTTATCCTTAAAGATAAGTTAGCAAACGAAGTTCCACAGATTCTTCCATCAACGGAAG 660
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 595 ATCTTATCCTTAAAGATAAGTTAGCAAACGAAGTTCCTCAGATTCTTCCATCAACGGAAG 654
Query 661 GGTTTATATTCAAAGATTCCGACAAGTTTCTCCGGTACGAGGAAGCTCAAGTTCAACACA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 GGTTTATATTCAAAGATTCCGACAAGTTTCTCCGGTACGAGGAAGCTCAAGTTCAACACA 714
Query 721 GAGACATGGGAACAGAGATGACACCAATCGGAAGTGTAACAACTTCAAGATGTCACACGC 780
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 715 GAGACATGGGAACAGAGATGACACCAATAGGAAGTGTAACGACTTCAAGATGTCACACGC 774
Query 781 CGTTTAAAAGTTCCTCTCCGGCGAGACACAACACGCCTTCGCAATTGTCTGGTCCGTTAA 840
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 775 CGTTTAAAAGTTCCTCTCCAGCGAGACACAACACGCCTTCTCAATTGTCTGGTCCGTTAA 834
Query 841 CGGAAACTAAAAACGTTATAGATATATCCGAGTTCGCAGACAAGCTTAGACTCAGTGGGT 900
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 835 CGGAAACCAAAAACGTTATAGATATATCCGAGTTCGAAGACAAGCTTAGACTCAGTGGGT 894
Query 901 CAACAGCGAGTCACTATTGTAACTCGGTGACGAGTCACTGGAACTCGAGGgaagaagaag 960
|| || ||||||| |||||| |||||||||||||||| ||||||||||| ||||||||||
Sbjct 895 CATCAACGAGTCAGTATTGTTACTCGGTGACGAGTCATTGGAACTCGAGAGAAGAAGAAG 954
Query 961 aagaagagaTATCGAAGAGTTTAAGACATTTCGATATGGAGAGTGAGTTAAGGAGAAGTG 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 AAGAAGAGATATCGAAGAGTTTAAGACATTTCGATATGGAGAGTGAGTTAAGGAGAAGTG 1014
Query 1021 TTTCTGAATCTAAAGCTCCTTTATGGGATGATGAAGACGACAATATCAAGTTTTGTCACA 1080
| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1015 TGTCTGAATCTAAAGCTCCTTTATGGGATGATGAAGACGACAAGATCAAGTTTTGTCAAA 1074
Query 1081 GGTATCAAAGAGAAGAAGCCAAAATCCAGGCATGGGTTAATCTTGAAAACGCTAAAGCAG 1140
|||||||||||||||| |||||||| || ||||||||||||||||||||||||||||| |
Sbjct 1075 GGTATCAAAGAGAAGAGGCCAAAATTCAAGCATGGGTTAATCTTGAAAACGCTAAAGCCG 1134
Query 1141 AAGCTCAATCCAGAAAACTTGAGGTGAAAATACAGAAGATGAGATCAAATTTGGAGGAGA 1200
|||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1135 AAGCTCAATCTAGAAAGCTTGAGGTGAAAATACAGAAGATGAGATCAAATTTAGAGGAGA 1194
Query 1201 AATTGATGAAGAGAATGGATATGGTGCACCGCAGAGCAGAAGATTGGAGAGCTACGGCGA 1260
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1195 AATTAATGAAGAGAATGGATATGGTGCACCGGAGAGCAGAAGATTGGAGAGCTACGGCGA 1254
Query 1261 GGCAACAACACGTTGAGCAGATGCATAAAGCGGCCGAGACTGCGAGGAAGTTGACAAACC 1320
|||| ||||| |||||||||||||| |||||||||||||| |||||||| ||||||||||
Sbjct 1255 GGCAGCAACATGTTGAGCAGATGCAGAAAGCGGCCGAGACGGCGAGGAAATTGACAAACC 1314
Query 1321 GCCGTGGCTATTTGGTTACCGGCCGTAGCTCATGCGGTTGTTTACCTTGCAATAATACTT 1380
|||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 1315 GCCGAGGCTATTTGGTTACCGGCCGTAGCTCATGTGGTTGTCTACCTTGCAATAATACTT 1374
Query 1381 GTCATTAAAGCAGAGTTaaa--aaaaGAGAGTAAAATACACATAAACAAACACAAGAAAT 1438
|||||||| ||| | ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1375 GTCATTAACTCAG--TCAAAGTAAAAGAGAGTAAAATACACATAAACAAACACAAGAAAT 1432
Query 1439 TACTGTTT 1446
||||||||
Sbjct 1433 TACTGTTT 1440
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71284773900
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5