BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474528
Length=1280
Score E
Sequences producing significant alignments: (Bits) Value
AT1G54010.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superf... 1727 0.0
AT1G54000.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superf... 1628 0.0
> AT1G54010.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily
protein | chr1:20158664-20160815 REVERSE LENGTH=1419
Length=1419
Score = 1727 bits (935), Expect = 0.0
Identities = 1114/1199 (93%), Gaps = 17/1199 (1%)
Strand=Plus/Plus
Query 17 ttctctctctctctctATTCACTAAACGATGGCAAACAACTGTAATTTAGTCAGTGTTCT 76
|||||||||||| | || || ||||| ||||||||| |||||||||||||||||||||||
Sbjct 44 TTCTCTCTCTCTGTATACTCTCTAAATGATGGCAAAAAACTGTAATTTAGTCAGTGTTCT 103
Query 77 ATGTGTATTTTTGGTATTGACTCTCTTTCACAACCCCATCGCCGTCTCCGGACAGATTAA 136
||||||||||||||||||||| |||||| |||| |||||| ||||| |||| ||| ||
Sbjct 104 ATGTGTATTTTTGGTATTGACCCTCTTTAACAAACCCATCACCGTCGCCGGGCAG---AA 160
Query 137 TGTTCCGGTGGTGGCCTTGTTCACCTTTGGTGACTCCAACTTCGATGCCGGAAACAAACA 196
| |||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 161 TATTCCGGCGGTGGGCTTGTTCACCTTTGGTGACTCCAACTTCGACGCCGGAAACAAACA 220
Query 197 GAATCTCACCAAAACCTTAGTCGCTCAAGGTTTCTGGCCGTATGGAAAATCCCGAGATGA 256
|| |||||||||||||||| || ||||| ||||||||||||||||||||||||||||||
Sbjct 221 GACTCTCACCAAAACCTTACTCCCTCAAACTTTCTGGCCGTATGGAAAATCCCGAGATGA 280
Query 257 TCCCAACGGCAAATTCTCCGACGGCTTCATCGCTCCGGACTTCGTCGCAAAATTCATGAA 316
||||||||||||||||||||||||| |||||||||| |||||| |||| ||||||||||
Sbjct 281 TCCCAACGGCAAATTCTCCGACGGCCTCATCGCTCCAGACTTCCTCGCTAAATTCATGAG 340
Query 317 GATCCCGATCGCGATCCCGCCGGCGCTTCAACCGAACGTCAATGTCTCACGTGGAGCTAG 376
||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 341 GATTCCGATCGTGATCCCGCCGGCCCTTCAACCGAACGTCAATGTCTCACGTGGAGCTAG 400
Query 377 TTTCGCCGTCGCCGATGCTACTCTACTCGGAGCTCCAGTGGAATCTTTGACTCTGAATCA 436
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 401 TTTCGCCGTCGCTGATGCTACTCTACTCGGAGCTCCGGTGGAATCTTTGACTCTGAATCA 460
Query 437 GCAAGTGAGAAAATTCAATCAAATGAAAGCAGCAAATTGGAACGATGACTTCCTGAAGAA 496
||||||||||| ||||||||||||||||||||||||||||| ||||| ||| |||||||
Sbjct 461 ACAAGTGAGAAAGTTCAATCAAATGAAAGCAGCAAATTGGAATGATGATTTCGTGAAGAA 520
Query 497 GTCAGTGTTTATGATATACGTTGGTGCAAACGATTACTTGAATTTCACCAAGAACAACCC 556
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 521 GTCAGTGTTTATGATATACATTGGTGCAAACGATTACTTGAATTTCACCAAGAACAACCC 580
Query 557 TAACGCCGATGCATCTGCTCAACAAGCTTTTGTCACTTCCGTGACCAACAAGTTAAAGAA 616
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 581 TAACGCCGATGCATCTACTCAACAAGCTTTTGTCACTTCCGTGACCAACAAGTTAAAGAA 640
Query 617 CGACATCAGCTTGTTGTATTCATCAGGAGCGAGTAAATTCGTGATCCAAACCTTAGCTCC 676
||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 641 CGATATCAGCTTGTTGTATTCATCAGGAGCGAGTAAATTTGTGATCCAAACCCTAGCTCC 700
Query 677 ATTGGGTTGCTTACCCATCGTCAGACAAGAGTACAACACCGGGATTGATCAATGCTATGA 736
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 701 ATTGGGTTGCTTACCCATCGTCAGACAAGAGTTCAACACCGGGATGGATCAATGCTATGA 760
Query 737 GAAACTCAACGATTTGGCTAAACAACACAACGAAAAAATTGGACCGATGTTGAACGAAAT 796
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 761 GAAACTCAACGATTTGGCTAAACAACACAACGAAAAAATTGGACCGATGTTGAACGAATT 820
Query 797 GGCTAGAACAACTCCTG-----G-T--TT-CCAATTTACCGTTTTTGATTTCTACAATGC 847
|||||||||| |||||| | | || |||||| ||||| |||||||||||||| ||
Sbjct 821 GGCTAGAACAGCTCCTGCATCAGCTCCTTTCCAATTCACCGTCTTTGATTTCTACAACGC 880
Query 848 CATTCTTACTAGGACGCAGAGGAACCAGAACTTCCGGTTTTTCGTTACGAACGCATCGTG 907
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 881 GATTCTTACTAGGACGCAGAGGAACCAAAACTTCCGATTTTTCGTTACGAACGCATCGTG 940
Query 908 CTGCGGAGTTGGGACACACGATGCGTATGGTTGCGGTTTACCTAACGTGCATTCGAGGCT 967
|||||||||||||||||| ||||| |||||||||||||| |||||||| |||||||||||
Sbjct 941 CTGCGGAGTTGGGACACATGATGCTTATGGTTGCGGTTTTCCTAACGTACATTCGAGGCT 1000
Query 968 ATGCGAGTACCAACGGTCTTACCTATTCTTCGACGGACGTCACAACACCGAGAAGGCGCA 1027
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1001 ATGCGAGTACCAACGGTCTTACCTATTCTTCGACGGACGTCACAACACTGAGAAGGCGCA 1060
Query 1028 AGAAATGTTTGGTCATCTTCTTTTTGGGGCCGATACAAATGTTGTCCAACCAATGAACGT 1087
||| ||||||||||||||||||||||| ||||||||||||||| ||||||| |||||| |
Sbjct 1061 AGAGATGTTTGGTCATCTTCTTTTTGGAGCCGATACAAATGTTATCCAACCGATGAACAT 1120
Query 1088 CCGTGAGCTTGTTGTTTACCCAGTCGATGAACCTATGCGTGAGTTTTGGGTGCCTCCAAC 1147
|||||||||||| |||||||| | |||||||||||||||||||| ||||||||| || |
Sbjct 1121 CCGTGAGCTTGTCGTTTACCCTGCCGATGAACCTATGCGTGAGTCTTGGGTGCC-CC--C 1177
Query 1148 AACGTCAGCCACTGTTCAAGC-CAGCGATAGCCGCGGTTACGAGTATTACTGAGTCTCT 1205
|||||||||||| |||||| | ||| || ||||||||||||||||||||||||||||||
Sbjct 1178 AACGTCAGCCACCGTTCAA-CTCAGGGAGAGCCGCGGTTACGAGTATTACTGAGTCTCT 1235
> AT1G54000.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily
protein | chr1:20154169-20156419 REVERSE LENGTH=1609
Length=1609
Score = 1628 bits (881), Expect = 0.0
Identities = 1094/1192 (92%), Gaps = 34/1192 (3%)
Strand=Plus/Plus
Query 38 CTAAACGATGGCAAACAACTGTAATTTAGTCAGTGTTCTATGTGTATTTTTGGTATTGAC 97
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 51 CTAAATGATGGCAAACAACTGTAATTTAGTCAGTGTTCTATGTGTAATTTTGGTATTGAC 110
Query 98 TCTCTTTCACAACCCCATCGCCGTCTCCGGACAGATTAATGTTCCGGTGGTGGCCTTGTT 157
|||||||||||||||||| | ||| ||||||||| | | | ||||||||| ||||||||
Sbjct 111 CCTCTTTCACAACCCCATCACTGTCGCCGGACAGAAT-A-G-TCCGGTGGTCGCCTTGTT 167
Query 158 CACCTTTGGTGACTCCAACTTCGATGCCGGAAACAAACAGAATCTCACCAAAACCTTAGT 217
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 168 CACCTTTGGTGACTCCAACTTCGACGCCGGAAACAAACAGACTCTCACCAAAACCTTAGT 227
Query 218 CGCTCAAGGTTTCTGGCCGTATGGAAAATCCCGAGATGATCCCAACGGCAAATTCTCCGA 277
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 228 CGCTCAAGGTTTCTGGCCGTACGGAAAATCTCGAGATGATCCCAACGGCAAATTCTCCGA 287
Query 278 CGGCTTCATCGCTCCGGACTTCGTCGCAAAATTCATGAAGATCCCGATCGCGATCCCGCC 337
|||| ||||| ||||||||||| |||| |||||||||||||| ||| |||||||| ||||
Sbjct 288 CGGCCTCATCACTCCGGACTTCCTCGCTAAATTCATGAAGATTCCGCTCGCGATCGCGCC 347
Query 338 GGCGCTTCAACCGAACGTCAATGTCTCACGTGGAGCTAGTTTCGCCGTCGCCGATGCTAC 397
|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 348 GGCGCTTCAACCGAACGTCAATGTCTCACGTGGAGCTAGTTTCGCCGTCGAAGGTGCTAC 407
Query 398 TCTACTCGGAGCTCCAGTGGAATCTTTGACTCTGAATCAGCAAGTGAGAAAATTCAATCA 457
||||||||||||||| ||||||||| ||||||||||||| ||||||| ||||||||||||
Sbjct 408 TCTACTCGGAGCTCCGGTGGAATCTATGACTCTGAATCAACAAGTGAAAAAATTCAATCA 467
Query 458 AATGAAAGCAGCAAATTGGAACGATGACTTCCT-GAAGAAGTCAGTGTTTATGATATACG 516
||||||||||||||||||||||||||| ||| | | | |||||||| ||||||||||||
Sbjct 468 AATGAAAGCAGCAAATTGGAACGATGATTTCGTGGCA-AAGTCAGTATTTATGATATACA 526
Query 517 TTGGTGCAAACGATTACTTGAATTTCACCAAGAACAACCCTAACGCCGATGCATCTGCTC 576
||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||
Sbjct 527 TTGGTGCAAACGATTACTTAAATTTCACCAAGAACAACCCTACCGCTGATGCATCTGCTC 586
Query 577 AACAAGCTTTTGTCACTTCCGTGACCAACAAGTTAAAGAACGACATCAGCTTGTTGTATT 636
||||||||||||| ||||||||||||||||||||||||||||| || ||| ||||||||
Sbjct 587 AACAAGCTTTTGTTACTTCCGTGACCAACAAGTTAAAGAACGATATTAGCGCGTTGTATT 646
Query 637 CATCAGGAGCGAGTAAATTCGTGATCCAAACCTTAGCTCCATTGGGTTGCTTACCCATCG 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 647 CATCAGGAGCGAGTAAATTCGTGATCCAAACCTTAGCTCCATTGGGTTGCTTACCCATCG 706
Query 697 TCAGACAAGAGTACAACACCGGGATTGATCAATGCTATGAGAAACTCAACGATTTGGCTA 756
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 707 TCAGACAAGAATACAACACCGGGATGGATCAATGCTATGAGAAACTCAACGATTTGGCTA 766
Query 757 AACAACACAACGAAAAAATTGGACCGATGTTGAACGAAATGGCTAGAA-CAACTCCTG-- 813
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 767 AACAACACAACGAAAAAATTGGACCGATGTTGAACGAAATGGCTAGAAACT-CTCCTGCA 825
Query 814 ---G-T--TT-CCAATTTACCGTTTTTGATTTCTACAATGCCATTCTTACTAGGACGCAG 866
| | || |||||| ||||| |||||||||||||||||| |||||||||||||||||
Sbjct 826 TCAGCTCCTTTCCAATTCACCGTCTTTGATTTCTACAATGCCGTTCTTACTAGGACGCAG 885
Query 867 AGGAACCAGAACTTCCGGTTTTTCGTTACGAACGCATCGTGCTGCGGAGTTGGGA-CACA 925
|||||||| ||||||||||||||||| |||||||||||||||||||||||||| | | ||
Sbjct 886 AGGAACCAAAACTTCCGGTTTTTCGTCACGAACGCATCGTGCTGCGGAGTTGG-ATCTCA 944
Query 926 CGATGCGTATGGTTGCGGTTTACCTAACGTGCATTCGAGGCTATGCGAGTACCAACGGTC 985
|||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 945 CGATGCTTATGGTTGCGGTTTACCTAACGTGCATTCGAAGCTATGTGAGTACCAACGGTC 1004
Query 986 TTACCTATTCTTCGACGGACGTCACAACACCGAGAAGGCGCAAGAAATGTTTGGTCATCT 1045
|| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 1005 TTTCCTATTCTTCGACGGACGTCACAACTCCGAGAAGGCGCAAGAAATGTTTGCCCATCT 1064
Query 1046 TCTTTTTGGGGCCGATACAAATGTTGTCCAACCAATGAACGTCCGTGAGCTTGTTGTTTA 1105
||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 1065 TCTTTTTGGAGCCGATACAAATGTTGTCCAACCGATGAACGTCCGTGAGCTTACTGTTTA 1124
Query 1106 CCCAGTCGATGAACCTATGCGTGAGTTTTGGGTGCCTCCAAC---A---AC-GTC-A-GC 1156
||||||||||||||| |||||||| ||||||||||||||||| | || ||| | ||
Sbjct 1125 CCCAGTCGATGAACCCATGCGTGAATTTTGGGTGCCTCCAACGCCAGCTACTGTCCACGC 1184
Query 1157 CA-CTGT-TCAAGC-CAG-CGA-TAGCCGCGGTTACGAGTATTACTGAGTCT 1203
|| | | || ||| | | | | |||||||||||||||||||||||||||||
Sbjct 1185 CAGC-GACTCTAGCTC-GTCCACTAGCCGCGGTTACGAGTATTACTGAGTCT 1234
Score = 73.1 bits (39), Expect = 6e-12
Identities = 50/55 (91%), Gaps = 2/55 (4%)
Strand=Plus/Plus
Query 1207 TTTCTACAA-GGCTTGTGAGTTAAATTATAACCGAATCAAAATCGGAATCTTGAT 1260
||||||||| || | |||||||| ||||||||||||||||||||||||||||||
Sbjct 1267 TTTCTACAATGG-TCATGAGTTAATTTATAACCGAATCAAAATCGGAATCTTGAT 1320
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62951483430
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5