BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474531
Length=1166
Score E
Sequences producing significant alignments: (Bits) Value
AT1G54020.2 | Symbols: | GDSL-like Lipase/Acylhydrolase superf... 1821 0.0
> AT1G54020.2 | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily
protein | chr1:20161670-20163743 REVERSE LENGTH=1291
Length=1291
Score = 1821 bits (986), Expect = 0.0
Identities = 1109/1169 (95%), Gaps = 6/1169 (1%)
Strand=Plus/Plus
Query 1 TTCTGCTTAACTGAAAATGGAGTGTAGTTTAGTGAGTGTACTAGGAATATTATTGGTATT 60
||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 22 TTCTGGTTAACTGAAAATGGAGTGTAGTTCAGTGAGTGTACTAGGAATATTACTGGTATT 81
Query 61 TTCTCT-CTTCCACAATCTTGTCACCGTCTCCGGGCAGAATATTCCGGCGGTGGGTTTGT 119
| |||| ||| || || ||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 82 TCCTCTCCTT-CATAACCTTGTCACCATCTCCGGGCAGAATCTTCCGGCGGTGGGTTTGT 140
Query 120 TCACATTCGGAGATTCCAGCTTCGACGCCGGAAATAAAAAGTTCCTCACTAGTGCTTCAC 179
|||| ||||||||||||| ||||||||| |||||||||||||||||||| |||||| |||
Sbjct 141 TCACTTTCGGAGATTCCAACTTCGACGCTGGAAATAAAAAGTTCCTCACAAGTGCTCCAC 200
Query 180 TTCCTCAAAACTTTTGGCCTTACGGTAAATCTCGAGATGACCCTAAGGGCAAGTTTTCCG 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 201 TTCCTCAAAACTTTTGGCCTTACGGTAAATCTCGAGATGACCCTAAGGGCAAGTTTTCTG 260
Query 240 ATGGCAAAATTGTCCCGGACTTCATTGCAAAATTCATGGGGATTCCACACGATTTACCGC 299
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 261 ATGGCAAAATTGTCCCGGACTTTATTGCAAAATTCATGGGGATACCACACGATTTACCGC 320
Query 300 CGGCGCTAAAACCCGG-AGCCGATGTGTCACGAGGAGCCAGCTTCGCCGTCGGGTCTGCT 358
|||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||
Sbjct 321 CGGCGCTAAAACCCGGCA-CCGATGTGTCACGAGGAGCCAGCTTCGCCGTCGGGTCCGCT 379
Query 359 TCTATTGTTGGATCACCAAGAGATTCTTTGACTCTGAATCAACAAGTGAGGAAATTCAAT 418
|| ||| ||||||| |||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 380 TCCATTCTTGGATCTCCAAAAGATTCTTTGGCTCTGAATCAACAAGTGAGGAAATTCAAT 439
Query 419 CAGATGATATCAAATTGGAAAGTGGATTACATTCAGAAATCAGTGTTTATGATTAGCATT 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 440 CAGATGATATCAAATTGGAAAGTGGATTACATTCAGAAATCAGTGTTTATGATTAGCATT 499
Query 479 GGTATGGAAGATTACTACAACTTCACCAAAAACAATCCTAATGCTGAAGTTTCGGCTCAA 538
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 500 GGTATGGAAGATTACTACAACTTTACCAAAAACAATCCTAATGCTGAAGTTTCTGCTCAA 559
Query 539 CAAGCTTTCGTTACTTCTGTCACTAACCGATTAAAGAGTGATATCAACTTGTTGTATTCA 598
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 560 CAAGCTTTCGTTACTTCTGTCACTAACCGGTTTAAGAGTGATATCAACTTGTTGTATTCA 619
Query 599 TCTGGAGCTAGTAAATTCGTCGTACAGTTGCTAGCGCCATTAGGTTGTTTACCGATCGCA 658
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 620 TCTGGAGCTAGTAAATTCGTCGTACACTTGCTAGCGCCATTAGGTTGTTTACCGATCGCA 679
Query 659 AGACAAGAATTTAAAACCGGCAATGATTGTTACGAGAAACTCAATGATTTGGCCAAACAA 718
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 680 AGACAAGAATTTAAAACCGGTAACAATTGTTACGAGAAACTCAATGATTTGGCCAAACAA 739
Query 719 CACAACGCTAAAATCGGACCGATGCTGAACGAAATGGCGGAAACTAAACCGGATTTCCAA 778
|||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 740 CACAACGCTAAAATTGGACCGATTTTGAACGAAATGGCGGAAACTAAACCGGATTTCCAA 799
Query 779 TTCACCGTTTTCGATTTCTACAACGTTATTCTTCGTAGGACACAAAGAAACATGAACTAC 838
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 800 TTCACCGTTTTCGATTTCTACAACGTTATTCTTCGCAGGACACAAAGAAACATGAACTAC 859
Query 839 CGATTTTCCGTGACAAATATATCGTGTTGCGGTGTTGGGACGCATAACGCATATGGTTGT 898
|| ||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 860 CGGTTTTCCGTGACGAATATATCGTGTTGCGGTGTTGGGACGCATTATGCATATGGTTGT 919
Query 899 GGTTTACCTAACGTGCACTCGAAATTATGCGAATATCAAAGATCGTACCTTTACTTCGAT 958
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 920 GGTTTACCTAACGTGCACTCGAAGTTATGCGAATATCAAAGATCCTACCTTTACTTCGAC 979
Query 959 GCACGCCACAACACAGAGAAGGCACAAGAAGCGTTCGCTCATCTTATCTTTGGAGCCGAC 1018
||||| || ||||||||||| |||||||||||||| |||||||||||||||||||| |||
Sbjct 980 GCACGTCATAACACAGAGAAAGCACAAGAAGCGTTTGCTCATCTTATCTTTGGAGCTGAC 1039
Query 1019 CCAAATGTTATCCAACCTATGAATGTTCGTGAGCTCATTGTCTATCCTGTTAATGAGCCT 1078
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1040 CCAAATGTTATCCAACCTATGAATGTTCGTGAGCTCATGGTGTATCCTGTTAATGAGCCT 1099
Query 1079 ATGCGTGAGTTTTGGGAGGATCCAACGGAGGAGAAGTTATCATTAGTCGAAT-CTTAGTG 1137
||||||||||||||||||||||||| ||| ||||||||||| |||||| ||| || ||||
Sbjct 1100 ATGCGTGAGTTTTGGGAGGATCCAATGGATGAGAAGTTATCGTTAGTCCAATACT-AGTG 1158
Query 1138 GATCTATCTACCTTGTTTAGTTCTTGAGC 1166
||||| ||||||| |||||||||||||||
Sbjct 1159 GATCTGTCTACCTCGTTTAGTTCTTGAGC 1187
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57228621300
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5