BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474533
Length=1277
Score E
Sequences producing significant alignments: (Bits) Value
AT1G54030.1 | Symbols: MVP1 | GDSL-like Lipase/Acylhydrolase su... 1925 0.0
> AT1G54030.1 | Symbols: MVP1 | GDSL-like Lipase/Acylhydrolase
superfamily protein | chr1:20167629-20169600 FORWARD LENGTH=1434
Length=1434
Score = 1925 bits (1042), Expect = 0.0
Identities = 1190/1261 (94%), Gaps = 11/1261 (1%)
Strand=Plus/Plus
Query 1 ATGGCGAttctcaaatctcacttcttctcactcttccctcttcttcttcttcttcacttt 60
|||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||
Sbjct 132 ATGGCGATTCTCAAATCTCACTTCTTCTTACTCTTCCCTCTTCTTCTTC-TC--CACTTT 188
Query 61 cccaccgtttccttcGCTCAGACGCTTTTTGTGTTCGGCGATGGTCTTTACGACGCCGGA 120
| ||| || ||||| ||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 189 CACACTGTCTCCTTTGCTCAGACGCTCTTTGTGTTCGGAGATGGTCTTTACGACGCCGGA 248
Query 121 AACAAACAGTTCCTCTCTCAGAACCGAGTTGACGCAAGCTTTCCTCCTTATGGAGTCACT 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 249 AACAAACAGTTTCTCTCTCAGAACCGAGTTGACGCAAGCTTTCCTCCTTATGGAGTCACT 308
Query 181 GTAGGACAAGCCACCGGACGGTGGTCCGATGGTTCTATCGTTCCTGATTATCTTGCTAAT 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 309 GTAGGACAAGCCACCGGACGGTGGTCCGATGGTTCTATCGTTCCTGATTATCTTGCTAAA 368
Query 241 TTCATGGGAATTCCTCGAATCTCTCCGATTCTCCTAACCACGGCGGATTTTTCTCACGGA 300
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 369 TTCATGGGAATTCCTAAAATCTCTCCGATTCTCCTAACCACGGCGGATTTTTCTCACGGA 428
Query 301 GCTAATTTCGCCATCGCCGACGCCT-CTGTACTCGGCTCTCCTCCAGAGACGATGACTTT 359
||||||||||||||||||||||| | | || || ||||||||||| ||||||||||||||
Sbjct 429 GCTAATTTCGCCATCGCCGACGC-TACCGTTCTTGGCTCTCCTCCGGAGACGATGACTTT 487
Query 360 GTCACAACAAGTGAGGAAATTCTTGGAAAACAAGAACAAATGGACAAATCAAACACGTTC 419
|||||||||||||| |||||||| |||||||||||| || ||||||||||||||||||||
Sbjct 488 GTCACAACAAGTGAAGAAATTCTCGGAAAACAAGAATAAGTGGACAAATCAAACACGTTC 547
Query 420 TGAAGCAATCTACTTGTTCTACATCGGTTCTGATGATTACTTGAACTATGCTAAGAATAA 479
|||||| ||||||||| ||||||| ||||||||||||||||||| ||||||||||| |||
Sbjct 548 TGAAGCTATCTACTTGATCTACATTGGTTCTGATGATTACTTGAGCTATGCTAAGAGTAA 607
Query 480 TCCAAGTCCATCAGATGA-TCAGAAACAAGCTTTTGTTGATCAAGTCATCACTACCTTAA 538
|||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||
Sbjct 608 TCCAAGTCCATCAGAT-ACTCAGAAACAAGCTTTTGTTGATCAAGTCATCACTACCATAA 666
Query 539 AAGCAGAAATAAAGGTGGTTTACGGGTCAGGCGGAAGGAAGTTTGCGTTCCAGAACTTGG 598
|||||||||||||||||||||||||||| ||||||||||| || || |||||||||||||
Sbjct 667 AAGCAGAAATAAAGGTGGTTTACGGGTCTGGCGGAAGGAAATTCGCATTCCAGAACTTGG 726
Query 599 CACCTTTGGGTTGCTTACCGGCTGTGAAACAAGCAAGCGGAAATGTTCAAGAATGCGTGA 658
|||| || |||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 727 CACCGTTAGGTTGCTTACCGGCCGTGAAACAAGCAAGCGGAAATGTTCAAGAATGTGTGA 786
Query 659 AATTGCCTTCAGAAATGGCTGCTTTGCATAACAAGAAACTTTTGCAGCTCTTGGTTGAAC 718
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 787 AATTGCCTTCGGAAATGGCTGCTTTGCATAACAAGAAACTTTTGCAGCTCTTGGTTGAAC 846
Query 719 TTTCACGAGAACTCAATGGTTTCCAGTACTCGTTTTACGACTTCTTTAGCTCGATCCAAA 778
| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 847 TATCAAGAGAACTAAATGGTTTCCAGTACTCGTTTTACGACTTCTTTAGCTCGATCCAAA 906
Query 779 ACAGAGTTATCAAGTCTAAGACTTACACATTCGAGACAGGAATCGCTGCTTGTTGTGGAA 838
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 907 ACAGAGTTATCAAGTCTAAGACTTATACATTCGAGACAGGAAACGCTGCTTGTTGTGGAA 966
Query 839 CTGGCTCTATCAACGGGAGCGATTGCTCTGCTAAAAATGTATGTGCCAAGCCTGAAGAGT 898
||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||
Sbjct 967 CTGGCTCTATCAACGGGAGTAATTGCTCAGCTAAAAATGTATGCGCCAAGCCTGAAGAGT 1026
Query 899 ATATCTTCTTTGACGGTAAGCATTTGACGCAAGAAGCGAACCTTCAAGTCGGGCATTTGA 958
||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1027 ATATCTTCTTTGATGGTAAGCATTTGACGCAAGAAGCCAACCTTCAGGTCGGGCATTTGA 1086
Query 959 TGTGGGGAGCAGATCCGGAAGTGATTGGACCGAACAATATCAGGGAGCTTATGGTCCTTC 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1087 TGTGGGGAGCAGATCCGGAAGTGATTGGACCGAACAATATCAGGGAGCTTATGGTCCTTC 1146
Query 1019 CTCTAGA-ACTTACCGTCATCTTAGCTGATATACAGGAAGCTATGGCTGCCATGAGACCG 1077
||||||| | |||| ||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 1147 CTCTAGACA-TTACAGTCATCTTAGCTGGTATACAAGAAGCTATGGCTGCCATGAGACCG 1205
Query 1078 AGACAGAGCAAAATTGAGAGTCTCTATGATATCAAGAAGATGGAATCAGAGATGGAGAAT 1137
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1206 AGACAGAGCAACATTGAGAGTCTCTATGATATCAAGAAGATGGAGTCAGAGATGGATAAT 1265
Query 1138 CATTGGCTTTATCAAGTTGACAAAGCTAGCTCCTTTATGATCTAAGATTGTGGTTACAAT 1197
|||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |
Sbjct 1266 CATTGGCTTTATCAAGTTGACAAAGCTATCTCCTTTATGATATAAGATTGTGGTTACAGT 1325
Query 1198 ATGATCTAAGCCAGAGAGTATAAGAGCTAGTGTAACAAGGAAACTAGACAAGAAAACTGA 1257
|||| ||||| ||||||| |||||||||||||||||| ||| |||| ||||||||||||
Sbjct 1326 TTGATTTAAGCGAGAGAGTTTAAGAGCTAGTGTAACAAAGAA-CTAG-CAAGAAAACTGA 1383
Query 1258 A 1258
|
Sbjct 1384 A 1384
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62800881795
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5