BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474535
Length=1553
Score E
Sequences producing significant alignments: (Bits) Value
AT1G54060.1 | Symbols: ASIL1 | 6B-interacting protein 1-like 1 ... 2004 0.0
> AT1G54060.1 | Symbols: ASIL1 | 6B-interacting protein 1-like
1 | chr1:20180679-20182324 FORWARD LENGTH=1646
Length=1646
Score = 2004 bits (1085), Expect = 0.0
Identities = 1470/1638 (90%), Gaps = 97/1638 (6%)
Strand=Plus/Plus
Query 1 AAAAAATGGCAAAAGCATAAATACCTTATAGCGATATGTCA--ATTTACCATAAAACCAT 58
|||||||||| |||||||||||||||||||||||||| | | |||||||||||||||||
Sbjct 21 AAAAAATGGCCAAAGCATAAATACCTTATAGCGATATTTGAGTATTTACCATAAAACCAT 80
Query 59 ACGAGTAC--TCACGG-T-T--ATTGC---T-TT-TTC----GTTATTAAAGAAAAGAGT 103
||| ||| |||||| | | ||| | | || ||| |||||||||| |||||||
Sbjct 81 TCGAATACTGTCACGGTTCTAAATTTCTAATATTGTTCTTTTGTTATTAAAGGAAAGAGT 140
Query 104 GAAGGGTGTTTTCGTCATTTCTCATATCCATCGGGTCAATAACGGAGATTACCTATCCGG 163
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 141 GAAGGGTGTTTTCGTCATTTAACATATCCATCGGGTCAATAACGGAGATTACCTATCCGG 200
Query 164 TGACCTTATCCCCTCGCCGGTGAGCGAATCTCAGATCCAAAATTTTGC---A--CT---- 214
|||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 201 TGACCTTATCCCCTCGCCGGTGAGCGAATCTCAGATCCAAAATTTTGCAAAATCCTCAGA 260
Query 215 T--TC-T-CCGAAT-C-AATCGGTCGA-CTTTCATGGAGGACGACGACGAGATTCAGTCG 267
| || | || | | ||||| |||| ||||||||||||||||||||||||||||||
Sbjct 261 TCGTCTTACCTTCTCCGAATCGATCGATTTTTCATGGAGGACGACGACGAGATTCAGTCA 320
Query 268 ATTCCATCTCCGGGAGATTCTTCCCTTTCACCACAAGCTCCTCCTTCTCCGCCGATTTTG 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 321 ATTCCATCTCCGGGAGATTCTTCCCTTTCACCACAAGCTCCTCCTTCTCCGCCGATTTTG 380
Query 328 CCAACAAACGACGTTACGGTGGCCGTCGTGAAGAAACCACAGA-CGCTAG-TTTCTTCTC 385
|||||||||||||| |||||||||||||||||||||||||| | || | |||||||||
Sbjct 381 CCAACAAACGACGTGACGGTGGCCGTCGTGAAGAAACCACA-ACCG-GGGCTTTCTTCTC 438
Query 386 AATCTCCGTCGAGGAACGCTTTAGCGTTAGTGGTTCATACTCCTTCTGTAACC---GGTG 442
|||||||||| | |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 439 AATCTCCGTCCATGAACGCTTTAGCGTTAGTGGTTCATACTCCTTCTGTAACCGGTGGTG 498
Query 443 GTGGTAGCGGTAATACCAGAAACGGAC---------GAGGAGGAAGCGGTGGTGGTGGCG 493
|||||||||| || | ||||||||||| |||||||||||||||||||||| |
Sbjct 499 GTGGTAGCGG-AA-A-CAGAAACGGACGAGGAGGAGGAGGAGGAAGCGGTGGTGGTGGAG 555
Query 494 GAGGAAGAGACGATTGTTGGAGCGAAGAAGCAACCAAGGTTCTAATCGACGCTTGGGGAG 553
|||||||||| |||||||||||||||||||| || |||||||||||||| ||||||||||
Sbjct 556 GAGGAAGAGATGATTGTTGGAGCGAAGAAGCTACAAAGGTTCTAATCGAAGCTTGGGGAG 615
Query 554 ATCGATTCTCTGAACCAGGTAAAGGAACTTTGAAGCAACAACATTGGAAAGAAGTAGCTG 613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 616 ATCGATTCTCTGAACCAGGTAAAGGAACTTTGAAGCAACAACATTGGAAAGAAGTAGCTG 675
Query 614 AGATTGTGAACAAGAGTCGTCAATGCAAATACCCTAAAACTGATATACAGTGTAAGAACA 673
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 676 AGATTGTGAACAAGAGTCGTCAATGCAAATACCCTAAAACTGATATTCAGTGTAAGAACA 735
Query 674 GGATTGATACGGTGAAGAAGAAGTATAAGCAAGAGAAAGCCAAGATTGCTTCTGGTGATG 733
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 736 GAATTGATACGGTGAAGAAGAAGTATAAGCAAGAGAAAGCTAAGATTGCTTCTGGTGATG 795
Query 734 GACCTAGTAAATGGGTCTTCTTCAAGAAGCTTGAGAGTTTGATTGGTGGTACTACGACAA 793
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 796 GACCTAGTAAATGGGTTTTCTTCAAGAAGCTTGAGAGTTTGATTGGTGGTACTACAACA- 854
Query 794 TTG-TTGCTTCTTCGAAAGCTTCGGAGAAGGCTCCTATGGGAGGAGCTCT---------C 843
|| |||||||||| |||||||| |||||||||||||||||||||||||| |
Sbjct 855 TTCATTGCTTCTTCAAAAGCTTCAGAGAAGGCTCCTATGGGAGGAGCTCTTGGGAATAGC 914
Query 844 CGTTCGAATATGTATAAACGGCAAGCTAAAGGAAATCAGATTGTGCAAGGAGGGG-ATTT 902
||||||| ||||| |||||||||| ||||||| |||||||||||||| | | |
Sbjct 915 CGTTCGAGTATGTTTAAACGGCAAACTAAAGGTAATCAGATTGTGCA-GCAACAACAAGA 973
Query 903 GAAGAGAAGCTCTAATTCGATGCGTTGGCATTTTAGGAAACGAAGTGCTTCTGAGACTGA 962
||||||| ||||| |||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 974 GAAGAGAGGCTCTGATTCGATGCGGTGGCATTTTAGGAAACGTAGTGCTTCTGAGACTGA 1033
Query 963 GTCTGAGTCTGATCCTGAACCTGAGGCTTCTCCTGAC---TCTGCTGAGAGTCTGCCACC 1019
|||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1034 GTCTGAGTCTGATCCTGAACCTGAGGCTTCTCCTGAGGAATCTGCTGAGAGTCTCCCACC 1093
Query 1020 GTTGCAACCGCCTCAACCGCTTTCGTTTCATCTGCCTAAGCGGTTGAAGGTGGATAAGAG 1079
||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 1094 TTTGCAACCGATTCAACCGCTTTCGTTTCATATGCCAAAGCGGTTGAAGGTGGATAAGAG 1153
Query 1080 TGGAGATGGAGGGAGTGGAGTTGGAGATGTGGCGAGGGCGATACTTGGATTTACGGAAGC 1139
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1154 TGGAGGTGGAGGGAGTGGAGTTGGAGATGTGGCGAGGGCGATACTTGGATTTACGGAAGC 1213
Query 1140 TTATGAGAAGGCGGAAACGGCTAAGCTTAAGCTAATGGCGGAACTGGAAAAGGAGAGGAT 1199
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 1214 TTATGAGAAGGCGGAAACTGCTAAGCTTAAGTTAATGGCGGAACTGGAAAAGGAGAGGAT 1273
Query 1200 GAAATTCGCTAAAGAGATGGAGTTGCAGAGAATGCAGTTCTTGAAAACTCAATTGGAGAT 1259
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1274 GAAATTTGCTAAAGAGATGGAGTTGCAGAGAATGCAGTTCTTGAAAACTCAATTGGAGAT 1333
Query 1260 AACACAGAACAATCAAGAAGAGGAAGAGAGGAGCAGGCAGCGAGGAGAAAGGAGGATCGC 1319
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1334 AACACAGAACAATCAAGAAGAGGAAGAGAGGAGCAGGCAGCGAGGAGAAAGGAGGATCGT 1393
Query 1320 TGACGATGATGAT---CGCAATGGCAAGAATAACGGCAATGTAAGTAGCTGACAATTGAA 1376
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1394 TGATGATGATGATGATCGCAATGGCAAGAATAACGGCAATGTAAGTAGCTGACAATTGAA 1453
Query 1377 CACA-AA-TGTTCCTATGATATT-GCTATGATAAGCTGGATTT-AGGATTCGATGTTGTT 1432
|||| || ||||||||||||||| ||||||||||||||||||| ||| || |||||||||
Sbjct 1454 CACACAAATGTTCCTATGATATTTGCTATGATAAGCTGGATTTTAGGTTTTGATGTTGTT 1513
Query 1433 GTT------A------C--C-TTGTGGGATGTGTAAATGTAGA-A-GTTATGACTCTGAT 1475
||| | | | |||||||||||||||||||||| | ||||||||||||||
Sbjct 1514 GTTGTTGTTATTGTTACTGCCTTGTGGGATGTGTAAATGTAGAGAAGTTATGACTCTGAT 1573
Query 1476 TTATCATTATCAtgttgttgttgttgttgttTATCCATCGTGTCTGAAACATGGGCAAAT 1535
| ||||| |||||||||||| ||||| | ||| || ||||| ||||||||||||||
Sbjct 1574 T-ATCAT---CATGTTGTTGTTATTGTTATCCATCT-TCTTGTCTTAAACATGGGCAAAT 1628
Query 1536 TAAAAAGCTTTGAACTTG 1553
||||||||||||||||||
Sbjct 1629 TAAAAAGCTTTGAACTTG 1646
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76656232215
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5