BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474538
Length=1835
Score E
Sequences producing significant alignments: (Bits) Value
AT1G54080.2 | Symbols: UBP1A | oligouridylate-binding protein 1... 2549 0.0
AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 1247 0.0
> AT1G54080.2 | Symbols: UBP1A | oligouridylate-binding protein
1A | chr1:20183581-20186909 REVERSE LENGTH=1720
Length=1720
Score = 2549 bits (1380), Expect = 0.0
Identities = 1617/1722 (94%), Gaps = 54/1722 (3%)
Strand=Plus/Plus
Query 163 ACTTGATTTTGAACCCTAGCTTAAGGGGAATTTTCTCGGGAAAAC-AAAGAGATA-TTTT 220
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||
Sbjct 1 ACTTGATTTTGAACCCTAGCTTAAGGGGAATTTTCTCGGG-AAACAAAAGAGATATTTTT 59
Query 221 ATCGCAGTGAGAAAGAAAGCa-aaaaaaTGCAGAATCAAAGGC---TT-A--AGCATcaa 273
|||||||||||||||||| || ||||||||||||||||||||| || | |||| |||
Sbjct 60 ATCGCAGTGAGAAAGAAA-CACAAAAAATGCAGAATCAAAGGCTTATTAAGCAGCAACAA 118
Query 274 caacatcaac-a-a-c-a-a-caacaagctatgattcaacaagctatgatgcaacaacaT 327
||||| |||| | | | | | |||||||||||||||||||||||||||||||||||||||
Sbjct 119 CAACAACAACAACAGCAACATCAACAAGCTATGATTCAACAAGCTATGATGCAACAACAT 178
Query 328 CCTTCTCTTTATCATCCTGGTGTTATGGCTCCTCCTCAGATGGAGCCTTTACCAAGTGGA 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 CCTTCTCTTTATCATCCTGGTGTTATGGCTCCTCCTCAGATGGAGCCTTTACCAAGTGGA 238
Query 388 AACCTTCCTCCTGGTTTTGATCCCACTACTTGCCGTAGTGTGTATGCTGGCAACATTCAT 447
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 239 AACCTTCCTCCTGGTTTTGATCCAACTACTTGCCGTAGTGTGTATGCTGGAAACATTCAT 298
Query 448 ACGCAAGTCACAGAGATTCTTCTTCAAGAGATTTTTGCAAGTACTGGCCCTATTGAAAGC 507
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 299 ACGCAGGTCACAGAGATTCTTCTTCAAGAGATTTTTGCAAGTACTGGTCCTATTGAAAGC 358
Query 508 TGTAAACTCATCAGAAAGGATAAGTCATCATATGGATTTGTTCACTACTTTGATCGAAGA 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TGTAAACTCATCAGAAAGGATAAGTCATCATATGGATTTGTTCACTACTTTGATCGAAGA 418
Query 568 TGTGCTAGTATGGCTATAATGACTCTTAATGGAAGGCATATATTTGGACAGCCTATGAAA 627
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 419 TGTGCTAGTATGGCTATAATGACTCTTAACGGAAGGCATATATTTGGACAGCCTATGAAA 478
Query 628 GTTAATTGGGCCTATGCAACTGGTCAAAGGGAAGATACATCAAGTCATTTCAACATTTTT 687
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 GTTAATTGGGCGTATGCAACTGGTCAAAGGGAAGATACATCAAGTCATTTCAACATTTTT 538
Query 688 GTTGGAGATCTCAGTCCAGAGGTTACTGATGCAGCATTGTTTGATAGCTTTTCTGCCTTT 747
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 539 GTTGGAGATCTTAGTCCAGAGGTTACTGATGCAGCATTGTTTGATAGCTTTTCTGCTTTT 598
Query 748 AATAGCTG--C-TC---------GGACGCAAGAGTAATGTGGGACCAGAAAACTGGACGC 795
|| ||||| | || |||||||||||||||||||||||||||||||||||||
Sbjct 599 AACAGCTGCTCTTCTTATTATAGGGACGCAAGAGTAATGTGGGACCAGAAAACTGGACGC 658
Query 796 TCAAGAGGCTTTGGGTTTGTTTCCTTCCGTAATCAGCAGGATGCTCAAACTGCCATAAAT 855
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TCAAGAGGCTTTGGTTTTGTTTCCTTCCGTAATCAGCAGGATGCTCAAACTGCCATAAAT 718
Query 856 GAGATGAATGGTAAGTGGTTAAGTAGCAGACAGATCAGATGCAACTGGGCGACAAAAGGT 915
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 719 GAGATGAATGGTAAATGGGTAAGTAGCAGACAGATCAGATGCAACTGGGCGACAAAAGGT 778
Query 916 GCTACTTTTGGCGAGGACAAGCATAGCTCTGACGGAAAAAGTGTTGTGGAACTTACAAAC 975
|||||||||||||||||||| ||||||||||| |||||||||||||| |||||||| |||
Sbjct 779 GCTACTTTTGGCGAGGACAAACATAGCTCTGATGGAAAAAGTGTTGTAGAACTTACTAAC 838
Query 976 GGCTCTTCAGAGGATGGTAGAGAGCTGTCAAACGAAGATGCCCCTGAAAACAATCCTCAA 1035
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 839 GGATCTTCAGAGGATGGTAGAGAGCTGTCAAATGAAGATGCCCCTGAAAACAATCCTCAA 898
Query 1036 TATACAACTGTCTATGTAGGAAACCTCTCTCCAGAAGTAACTCAGCTTGATCTACACCGT 1095
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 899 TTTACAACTGTCTATGTAGGAAATCTCTCTCCAGAAGTAACTCAGCTTGATCTACACCGT 958
Query 1096 CTGTTCTATACCCTTGGTGCTGGAGCGATCGAAGAGGTCCGTGTCCAGCGAGACAAAGGG 1155
|| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 959 CTATTCTATACCCTTGGTGCTGGAGTGATCGAAGAGGTCCGTGTCCAGCGAGACAAAGGG 1018
Query 1156 TTTGGTTTTGTGAGATATAACACTCATGACGAGGCTGCTCTTGCTATTCAGATGGGCAAC 1215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 TTTGGTTTTGTGAGATATAACACTCATGACGAGGCTGCTCTTGCTATTCAGATGGGCAAC 1078
Query 1216 GCTCAGCCTTACCTCTTTAGCAGACAGATAAAGTGTTCATGGGGAAACAAACCAACTCCA 1275
|||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 1079 GCTCAGCCTTTCCTCTTTAGCAGACAGATAAGGTGTTCCTGGGGAAACAAACCAACTCCA 1138
Query 1276 TCAGGCACAGCCTCAAACCCACTTCCTCCACCAGCCCCGATC-TCAGTCCCTGCTCTGTC 1334
|||||||||||||||||||||||||| |||||||||||| | ||||||||| |||||||
Sbjct 1139 TCAGGCACAGCCTCAAACCCACTTCCCCCACCAGCCCCGG-CATCAGTCCCTTCTCTGTC 1197
Query 1335 TGCAATGGACCTCTTAGCATATGAGAGGCAACTGACTCTAGCCAAGATGCATCCTCAGGC 1394
|||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||
Sbjct 1198 TGCAATGGACCTCTTAGCCTACGAGAGGCAACTGGCTCTAGCCAAGATGCATCCTCAGGC 1257
Query 1395 TCAACATTCTCTAAGGCAAGCAGG------AG-C--TG--G----AGGAAGTGCAGCTAT 1439
|||||||||||| ||||||||||| || | || | ||||| |||||||||
Sbjct 1258 TCAACATTCTCTGAGGCAAGCAGGTCTTGGAGTCAATGTTGCTGGAGGAACTGCAGCTAT 1317
Query 1440 GTACGATGGTGGCTTTCAGAATGTAGCTGCGGCCCATCAGCAGCTCATGTACTATCAGTA 1499
||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 GTATGATGGTGGCTATCAGAATGTAGCTGCGGCCCATCAGCAGCTCATGTACTATCAGTA 1377
Query 1500 ATAAACTCTCTTCACTGGCTCTGAGATActttttttct-tttctttctttct-ttcttct 1557
|||||| |||||||||||||||||||||| ||||| || ||||||||||| | |||||||
Sbjct 1378 ATAAACCCTCTTCACTGGCTCTGAGATACCTTTTT-CTGTTTCTTTCTTTTTCTTCTTCT 1436
Query 1558 taattttatcactttcttacttttttctAGACCTT----GTTCAAGAGTCTTTATGTATG 1613
||||||||| |||||||| |||||| ||||||||| |||||||||||||||||||||
Sbjct 1437 TAATTTTATAACTTTCTTGCTTTTT-CTAGACCTTCCTTGTTCAAGAGTCTTTATGTATG 1495
Query 1614 TGTCTCTTTCATTTAAAGCTGTTGGTTTTATTTATGTATGCAGAGCATTATGCTCAGTTT 1673
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 1496 TGTCTCTTTCATTTAAAGCCGTTGGTTTTATTTATGTATGCAGAGCTTTATGCTCAGTTT 1555
Query 1674 GTAACCTATAGGTCTTACTTGGATTGTAAGCCAAGCAATAAGATAACATCAAATAAAAGG 1733
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1556 GTAACCTATAGGTCTTACTTGGATTGTAAGCCAAGCAATAAGACAACATCAAATAAAAGG 1615
Query 1734 GGATTTGGTTTTCTGGGGTTTATGTTGTTTGTGGTTCTGTAATGATAGATTTGAAACATA 1793
|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
Sbjct 1616 GGATTTGGTTTTCTGGGGTTAATGTTGTTTGTGGTTCTGTAATGATAGGTTTGAAACAAA 1675
Query 1794 GTAATTTGTCGGTTATAAAAGTTGTATAGTTTCATTTCTCAT 1835
|||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1676 GTAATTTGTCTTTTATAAAAGTTTTATAGTTTCATTTCTCAT 1717
> AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4672919-4676162 FORWARD LENGTH=1604
Length=1604
Score = 1247 bits (675), Expect = 0.0
Identities = 1003/1159 (87%), Gaps = 32/1159 (3%)
Strand=Plus/Plus
Query 241 aaaaaaaTGCAGAATCAAAGGCTTAAGCATcaacaacatcaacaacaacaacaagctatg 300
|||||||||||||||| || || ||||| || || || |||||||||||||||||||||
Sbjct 103 AAAAAAATGCAGAATCCGAGACTGAAGCAACATCAGCAGCAACAACAACAACAAGCTATG 162
Query 301 at---tcaacaagctatgatgcaacaacaTCCTTCTCTTTATCATCCTGGTGTTATGGCT 357
|| ||||||||| ||||||| ||||| | |||||||| |||||||||||| |||||
Sbjct 163 ATGCAGCAACAAGCTCTGATGCAGCAACA--C-TCTCTTTACCATCCTGGTGTTTTGGCT 219
Query 358 CCTCCTCAGATGGAGCCT-TTACCAAGTGGAAACCTTCCTCCTGGTTTTGATCCCACTAC 416
||||||||| | |||||| || |||||||||||||||||||||||||||||||||| |||
Sbjct 220 CCTCCTCAGTTAGAGCCTGTT-CCAAGTGGAAACCTTCCTCCTGGTTTTGATCCCAGTAC 278
Query 417 TTGCCGTAGTGTGTATGCTGGCAACATTCATACGCAAGTCACAGAG-ATTCTTCTTCAAG 475
||||||||| ||||||| ||| ||||| ||||| || ||||||||| || | |||||||
Sbjct 279 TTGCCGTAGCGTGTATGTTGGAAACATCCATACACAGGTCACAGAGCCTT-TGCTTCAAG 337
Query 476 AGATTTTTGCAAGTACTGGCCCTATTGAAAGCTGTAAACTCATCAGAAAGGATAAGTCAT 535
|||||||| |||| ||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 338 AGATTTTTACAAGCACTGGCCCTGTTGAAAGCAGTAAACTCATCAGAAAGGATAAGTCAT 397
Query 536 CATATGGATTTGTTCACTACTTTGATCGAAGATGTGCTAG-TATGGCTATAATGACTCTT 594
||||||||||||||||||||||||||||||||| ||| | | |||||||| || ||||
Sbjct 398 CATATGGATTTGTTCACTACTTTGATCGAAGATCCGCT-GCTCTGGCTATACTGTCTCTG 456
Query 595 AATGGAAGGCATATATTTGGACAGCCTATGAAAGTTAATTGGGCCTATGCAACTGGTCAA 654
|| ||||||||| | |||||||||||||| ||||| |||||||| ||||| ||||||||
Sbjct 457 AACGGAAGGCATCTGTTTGGACAGCCTATCAAAGTCAATTGGGCGTATGCCACTGGTCAG 516
Query 655 AGGGAAGATACATCAAGTCATTTCAACATTTTTGTTGGAGATCTCAGTCCAGAGGTTACT 714
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 517 AGGGAAGATACATCAAGTCATTTCAACATTTTTGTTGGAGATCTCAGTCCAGAGGTCACT 576
Query 715 GATGCAGCATTGTTTGATAGCTTTTCTGCCTTTAATAGCTGCTCGGACGCAAGAGTAATG 774
|||||| |||| | | | |||||||||| |||| || || ||||| || ||||| |||
Sbjct 577 GATGCAACATTATATCAAAGCTTTTCTGTCTTTTCCAGTTGTTCGGATGCGAGAGTTATG 636
Query 775 TGGGACCAGAAAACTGGACGCTCAAGAGGCTTTGGGTTTGTTTCCTTCCGTAATCAGCAG 834
|||||||| |||||||| ||||| |||||||||||||||||||||||||| ||||| |||
Sbjct 637 TGGGACCAAAAAACTGGGCGCTCGAGAGGCTTTGGGTTTGTTTCCTTCCGCAATCAACAG 696
Query 835 GATGCTCAAACTGCCATAAATGAGATGAATGGTAAGTGGTTAAGTAGCAGACAGATCAGA 894
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 697 GATGCTCAAACTGCCATTAATGAGATGAATGGTAAGTGGTTAAGTAGCAGACAAATCAGA 756
Query 895 TGCAACTGGGCGACAAAAGGTGCTACTTTTGGCGAGGACAAGCAT-AGCTCTGACGGAAA 953
||||||||||| || || || ||||||| ||| || || |||| | || ||||| |||||
Sbjct 757 TGCAACTGGGCCACGAAGGGCGCTACTTCTGGTGATGATAAGC-TCAGTTCTGATGGAAA 815
Query 954 AAGTGTTGTGGAACTTACAAAC-GGCTCTTCAGAGGATGGTAGAGAG-C-TGTCAAACGA 1010
|||||||||||||||||||| | ||||| ||||||||||||| |||| | | | ||| ||
Sbjct 816 AAGTGTTGTGGAACTTACAA-CTGGCTCATCAGAGGATGGTAAAGAGACAT-T-AAATGA 872
Query 1011 AGATGCCCCTGAAAACAATCCTCAATATACAACTGTCTATGTAGGAAACCTCT-CTCCAG 1069
|| | |||||||| ||| |||| | ||| ||||| ||||| |||||||| | ||||||
Sbjct 873 GGAAACACCTGAAAATAATTCTCAGTTTACCACTGTTTATGTGGGAAACCT-TGCTCCAG 931
Query 1070 AAGTAACTCAGCTTGATCTACACCGTCTG-TTCTATACCCTTGGTGCTGGAGCGATCGAA 1128
| |||||||||||||||||||||||| | ||| || | ||||| ||||||| || ||
Sbjct 932 AGGTAACTCAGCTTGATCTACACCGT-TACTTCCATGCTCTTGGCGCTGGAGTTATTGAG 990
Query 1129 GAGGTCCGTGTCCAGCGAGACAAAGGGTTTGGTTTTGTGAGATATAACACTCATGACGAG 1188
|||||||||||||| ||||||||||| |||||||| |||||||||||||||||| |||
Sbjct 991 GAGGTCCGTGTCCAACGAGACAAAGGCTTTGGTTTCGTGAGATATAACACTCATCCCGAA 1050
Query 1189 GCTGCTCTTGCTATTCAGATGGGCAACGCTCAGCCTTACCTCTTTAGCAGACAGATAAAG 1248
||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||
Sbjct 1051 GCTGCTCTTGCTATTCAGATGGGTAACACTCAGCCTTACCTCTTTAACAGACAGATAAAG 1110
Query 1249 TGTTCATGGGGAAACAAACCAACTCCATCAGGCACAGCCTCAAACCCACTTCCTCCACCA 1308
|| |||||||||||||| ||||||||| |||| |||||||||||||||||||| |||||
Sbjct 1111 TGCTCATGGGGAAACAAGCCAACTCCACCAGGTACAGCCTCAAACCCACTTCCCCCACCT 1170
Query 1309 GCCCCGATCTC-AGTCCCTGCTCTGTCTGCAA-TGGACCTCTTAG-CATATGAGAGGCAA 1365
||||| | ||| ||| |||| ||| |||||| || | ||| || | ||||||||||||
Sbjct 1171 GCCCC-AGCTCCAGTTCCTGGTCTATCTGCAGCTG-ATCTCCTAAAC-TATGAGAGGCAA 1227
Query 1366 CTGACTCT-AGCCAAGATG 1383
|| | || ||| ||||||
Sbjct 1228 TTGGCACTTAGC-AAGATG 1245
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90812785905
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5