BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474541
Length=1734
Score E
Sequences producing significant alignments: (Bits) Value
AT1G54100.1 | Symbols: ALDH7B4 | aldehyde dehydrogenase 7B4 | c... 2529 0.0
> AT1G54100.1 | Symbols: ALDH7B4 | aldehyde dehydrogenase 7B4 |
chr1:20195264-20199130 REVERSE LENGTH=1869
Length=1869
Score = 2529 bits (1369), Expect = 0.0
Identities = 1552/1639 (95%), Gaps = 17/1639 (1%)
Strand=Plus/Plus
Query 46 TTTCAGC-TTTTTTACCAAAAGACGTACACGtctctctctctctct-cCTTTTTAAGATT 103
||| ||| ||||||| ||||||||||||||||||||||||||| || ||| ||| | |
Sbjct 77 TTTAAGCTTTTTTTA-CAAAAGACGTACACGTCTCTCTCTCTCACTCCCTCTTT-A-A-- 131
Query 104 CCGTGATCAGAAGCTCATTTCTTCGATACGATCCA-CATCAGAGATGGGTTCAGCGAACA 162
||||||||||||||||||||||||||||| | ||| |||||||||||| |||||||
Sbjct 132 ----GATCAGAAGCTCATTTCTTCGATACGATCAACCATTAGAGATGGGTTCGGCGAACA 187
Query 163 AAGAGTACGAGTTTCTGAGTGAGATT-GGCTTGACCTCTCACAACCTGGGATCTTACGTT 221
| |||||||||||||||||||||||| ||| |||| ||||||||| ||||||||||||||
Sbjct 188 ACGAGTACGAGTTTCTGAGTGAGATTGGGC-TGACTTCTCACAACTTGGGATCTTACGTT 246
Query 222 GCTGGCAAATGGCAAGCAAACGGACCTCTTGTTTCCACTTTCAATCCTGCTAACAATCAG 281
||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 247 GCTGGCAAATGGCAAGCCAACGGACCTCTTGTTTCAACTCTCAATCCTGCTAACAATCAG 306
Query 282 CCAATTGCTCAAGTTGTGGAAGCTTCTCTAGAAGATTACGAGCAAAGTTTGAAAGCCTGC 341
|||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||
Sbjct 307 CCAATTGCTCAAGTTGTGGAAGCTTCTCTAGAGGATTACGAGCAAGGTTTGAAAGCTTGC 366
Query 342 GAGGAAGCAGCCAAAATATGGATGCAGGTTACGGCTCCTAAGAGAGGTGATATTGTGAGA 401
||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 367 GAGGAAGCAGCTAAAATATGGATGCAGGTTACGGCTCCTAAGAGAGGTGATATCGTCAGA 426
Query 402 CAGATTGGAGATGCATTAAGATCCAAACTTGATTATCTTGGTCGTCTTCTTTCACTTGAA 461
|||||||| |||||| |||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 427 CAGATTGGGGATGCACTAAGATCCAAACTTGACTATCTTGGTCGTCTTCTTTCTCTTGAA 486
Query 462 ATGGGAAAGATTCTTGCTGAAGGAATCGGAGAAGTCCAGGAAGTAATTGATATGTGTGAT 521
||||||||||| ||||||||||| || |||||||| |||||||||||||| |||||||||
Sbjct 487 ATGGGAAAGATCCTTGCTGAAGGTATTGGAGAAGTTCAGGAAGTAATTGACATGTGTGAT 546
Query 522 TTTGCTGTTGGTTTGAGCCGGCAACTCAATGGATCCGTTATACCTTCCGAACGCCCTAAC 581
|||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||
Sbjct 547 TTTGCTGTTGGTTTGAGCCGACAACTCAATGGATCGGTTATACCTTCAGAACGCCCTAAC 606
Query 582 CACATGATGTTGGAGATGTGGAATCCTCTTGGCATTGTTGGTGTTATCACAGCGTTTAAT 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 607 CACATGATGTTGGAGATGTGGAATCCTCTTGGCATTGTTGGTGTTATCACAGCGTTTAAT 666
Query 642 TTTCCCTGTGCAGTTCTTGGTTGGAATGCTTGTATTGCACTGGTCTGTGGAAACTGTGTA 701
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 667 TTTCCCTGTGCAGTTCTTGGTTGGAATGCTTGTATTGCTCTTGTCTGTGGAAACTGTGTA 726
Query 702 GTCTGGAAAGGTGCTCCAACAACACCGTTGATCACTATTGCAATGACCAAGCTAGTAGCT 761
|||||||||||||||||||| |||||||| || ||||| |||||||||||||||||||||
Sbjct 727 GTCTGGAAAGGTGCTCCAACTACACCGTTAATAACTATCGCAATGACCAAGCTAGTAGCT 786
Query 762 GAAGTTTTAGAGAAGAACAATTTACCTGGTGCCATTTTTACGGCCATGTGTGGTGGTGCT 821
|||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 787 GAAGTTTTAGAGAAAAACAACTTACCCGGTGCCATTTTTACGGCCATGTGTGGTGGTGCT 846
Query 822 GAAATTGGTGAAGCAATAGCGAAAGACACGCGCATTCCCTTAGTATCCTTTACTGGAAGC 881
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 847 GAAATTGGTGAAGCAATAGCCAAAGACACACGCATTCCCTTAGTATCCTTTACTGGAAGC 906
Query 882 TCCAGGGTGGGCTTGATGGTACAACAAACAGTGAATGCGAGATCTGGCAAAACTTTACTT 941
||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 907 TCCAGGGTGGGCTCAATGGTACAACAAACAGTGAATGCGAGATCTGGGAAAACTTTGCTT 966
Query 942 GAACTGAGTGGAAATAATGCAATCATAGTCATGGACGACGCTGACATACAGTTAGCGGCT 1001
|| |||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 967 GAGTTGAGTGGAAACAATGCAATCATAGTCATGGACGATGCTGATATACAGTTAGCGGCT 1026
Query 1002 CGATCTGTTCTATTTGCTGCGGTTGGAACTGCTGGTCAACGTTGCACAACTTGCCGTAGG 1061
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1027 CGATCTGTTCTATTCGCTGCGGTTGGAACTGCTGGTCAACGTTGCACAACTTGCCGTAGG 1086
Query 1062 CTGCTTTTGCATGAGAGTGTCTATGACAAAGTACTCGAGCAACTGCTTACTTCATACAAA 1121
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1087 CTGCTTTTGCATGAGAGTGTCTATGACAAAGTACTCGAGCAACTGCTTACCTCATACAAA 1146
Query 1122 CAAGTCAAAATCGGTAATCCTCTTGAGAAAGGGACATTGTTAGGACCACTGCATACTCCT 1181
|||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1147 CAAGTCAAAATCGGCAATCCTCTTGAGAAAGGGACATTGTTAGGACCATTACATACTCCT 1206
Query 1182 GAATCAAAAAGGAACTTTGAGAAAGGAATTGAAGTCATCAAATCCCAGGCACGCGGTAAA 1241
|||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 1207 GAATCAAAAAAGAACTTTGAGAAAGGAATTGAAGTCATCAAATCCCAGG---GTGGTAAA 1263
Query 1242 ATACTAACGGGCGGTAAAGCAGTCGATGGTGAAGGGAACTTTGTGGAGCCTACGATAATC 1301
||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1264 ATACTAACGGGAGGTAAAGCAGTCGAAGGTGAAGGAAACTTTGTGGAGCCTACGATAATC 1323
Query 1302 GAGATATCAGCAGATGCTGCTGTCGTTAAAGAAGAGCTATTTGCTCCGGTTTTATATGTT 1361
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 1324 GAGATATCAGCAGATGCTGCTGTCGTCAAAGAAGAGCTATTTGCTCCGGTTCTATATGTT 1383
Query 1362 CTAAAGTTTAAGTCATTTGAAGAAGCTGTTGCGATAAACAACTCGGTTCCTCAAGGTCTA 1421
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 1384 CTAAAGTTTAAGTCATTTGGAGAGGCTGTTGCGATAAACAACTCGGTTCCTCAAGGTCTA 1443
Query 1422 AGCAGCTCGATATTCACTCGCAACCCCGAAAACATCTTCAGGTGGATCGGACCACTGGGA 1481
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1444 AGCAGCTCGATATTCACTCGGAACCCTGAAAACATCTTCAGGTGGATCGGACCACTGGGA 1503
Query 1482 AGTGATTGTGGCATTGTGAATGTGAACATACCGACGAATGGAGCTGAGATTGGTGGAGCC 1541
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1504 AGTGACTGTGGCATTGTGAATGTGAACATACCGACGAATGGAGCTGAGATTGGTGGAGCT 1563
Query 1542 TTTGGAGGCGAGAAAGCGACTGGTGGTGGTCGTGAAGCTGGAAGCGACTCATGGAAACAG 1601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1564 TTTGGAGGCGAGAAAGCGACTGGTGGTGGTCGTGAAGCTGGAAGCGACTCATGGAAACAG 1623
Query 1602 TACATGCGTCGATCCACTTGTACCATCAACTATGGGAACGAGTTACCTCTAGCGCAAGGA 1661
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1624 TACATGCGTCGATCGACTTGTACCATCAACTATGGAAACGAGTTACCTCTAGCGCAAGGA 1683
Query 1662 ATTAACTTCGGTTAGATTT 1680
|||||||||||||||||||
Sbjct 1684 ATTAACTTCGGTTAGATTT 1702
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85742530860
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5