BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg474543

Length=381
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G54120.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   549    7e-156


> AT1G54120.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT3G14060.1); 
Has 23 Blast hits to 23 proteins in 7 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:20207020-20207540 
FORWARD LENGTH=521
Length=521

 Score =  549 bits (297),  Expect = 7e-156
 Identities = 355/382 (93%), Gaps = 8/382 (2%)
 Strand=Plus/Plus

Query  1    ATGGATCCACGCATCGCCGCAA-CACCCTTATTCCGGTGGTCTAGGACTAGGAGTCGCCG  59
            ||||||| |||||||||||||| | ||| | |||||||||  |    ||||||| || ||
Sbjct  59   ATGGATCAACGCATCGCCGCAATC-CCCGTGTTCCGGTGG--T----CTAGGAGCCGTCG  111

Query  60   GAAGATTCATCTCCGTCGTCGTAAGTCGCAGGTGGTACGTCTTGGCGGGAAGAACAATGC  119
             ||||||||| ||||||| |||||||||||||||||||||||||| |||||||||| |||
Sbjct  112  AAAGATTCATATCCGTCGCCGTAAGTCGCAGGTGGTACGTCTTGGTGGGAAGAACAGTGC  171

Query  120  GGTGTCACGTGGCGGATTCTCGTTAAAGAAGATGGTTAGGAAGATGAAGCTGAGATGGTT  179
            |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct  172  GGTGTCACGTGGCGGATTCTCGTTAAAGAAGATGGTAAGGAGGATGAAGCTGAGATGGTT  231

Query  180  GAAGCTACACTACGTGAGACTTGTAAAGAAGATAAAAGGGTTTTATCTTAATTTAGTTAA  239
            ||||||||||||||||||| |||| ||||||||||||| |||||||| |||||| |||||
Sbjct  232  GAAGCTACACTACGTGAGAGTTGTGAAGAAGATAAAAGTGTTTTATCGTAATTTGGTTAA  291

Query  240  GGAGTTCGTAGACGCAGGAGCTGAGCTTGAAGCGATTCAGCAGCGAATGGCGGTTGAAGC  299
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  292  AGAGTTCGTAGACGCAGGAGCTGAGCTTGAAGCGATTCAGCAGCGAATGGCGGTTGAAGC  351

Query  300  GGCTGCGTTTGTGGTTCCCGGTTTAGGTCTCTCTTTCTCTTCTTTTTCAGTCCATGACCG  359
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  352  GGCTGCGTTTGCGGTTCCCGGTTTAGGTCTCTCTTTCTCTTCTTTTTCAGTCCATGACCG  411

Query  360  AGCACGGTATTTTCTTGTATAG  381
            ||||||||||||||||||||||
Sbjct  412  AGCACGGTATTTTCTTGTATAG  433



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17945586393


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5