BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474545
Length=674
Score E
Sequences producing significant alignments: (Bits) Value
AT1G54140.1 | Symbols: TAFII21, TAF9 | TATA binding protein ass... 1031 0.0
> AT1G54140.1 | Symbols: TAFII21, TAF9 | TATA binding protein associated
factor 21kDa subunit | chr1:20213967-20215223 REVERSE
LENGTH=766
Length=766
Score = 1031 bits (558), Expect = 0.0
Identities = 626/658 (95%), Gaps = 7/658 (1%)
Strand=Plus/Plus
Query 2 TTTTCCGATTCCTCGCCGCCGTTCATCAATCTCTCCGTCGTGTTTCTGCCATC-ACCTCT 60
||| ||||||||||||||||||||||||||||||||||||||||||||||| | | ||||
Sbjct 5 TTTCCCGATTCCTCGCCGCCGTTCATCAATCTCTCCGTCGTGTTTCTGCCA-CTAGCTCT 63
Query 61 CCACCAAAATTTCTCTCTCGCGTTAGTTGTTTAGGGATAAAAATGGCTGGAGAAGGTGAA 120
|||||||| |||||||||||| ||||||||||||||||||| ||||| ||||||||||||
Sbjct 64 CCACCAAACTTTCTCTCTCGCATTAGTTGTTTAGGGATAAACATGGCAGGAGAAGGTGAA 123
Query 121 GAAGATGTACCTAGAGATGCTAAGACTGTGAAATCTTTGCTTAAGTCGATGGGTGTAGAA 180
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 124 GAAGATGTACCTAGAGATGCTAAGATTGTGAAATCTCTGCTTAAGTCGATGGGTGTAGAA 183
Query 181 GACTACGAGCCTCGTGTGATACACCAGTTTCTGGAGTTATGGTACCGGTATGTGGTCGAA 240
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 184 GACTACGAGCCTCGTGTGATACATCAGTTTCTGGAGTTATGGTACCGGTATGTGGTCGAA 243
Query 241 GTCTTGACAGATGCTCAGGTTTACTCAGAGCATGCTAGCAAATCCAACATTGACTGCGAT 300
|| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 244 GTGTTGACAGATGCTCAGGTTTACTCAGAGCATGCTAGCAAACCCAACATTGACTGTGAT 303
Query 301 GATGTCAAGCTCGCTATTCAATCCAAAGTTAATTTCAGCTTCTCACAGCCACCTCCAAGA 360
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 304 GATGTGAAGCTCGCTATTCAATCCAAAGTTAATTTCAGCTTCTCACAGCCTCCTCCAAGA 363
Query 361 GAGGTTCTG-TTAGAGCTTGCTGCAAGCAGGAACAAGATCCCTCTGCCAAAATCGATAGC 419
||||||||| || |||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 364 GAGGTTCTGCTT-GAGCTTGCTGCAAGTAGGAACAAGATACCTCTGCCAAAATCGATAGC 422
Query 420 AGGACCTGGTGTTCCACTCCCACCTGAACAGGACACATTGCTGAGCCCAAATTACCAGCT 479
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 423 AGGACCCGGTGTTCCACTCCCACCTGAACAGGACACATTGCTGAGCCCAAATTATCAGCT 482
Query 480 CGTGATACCCAAGAAGTCAGTGTCCACAGAACCTGAAGAAACCGAGGACGATGAAGAAAT 539
||||||||| |||||||| || || |||||||||||||||||||||||||||||||||||
Sbjct 483 CGTGATACCGAAGAAGTCGGTTTCAACAGAACCTGAAGAAACCGAGGACGATGAAGAAAT 542
Query 540 GACAGATCCTGGACAGTCCTCTCAAGAACAACA---GCAGCAACAACAAGCATCAGACCT 596
||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||
Sbjct 543 GACAGATCCTGGACAGTCCTCTCAAGAACAACAACAGCAGCAACAACAAACCTCAGACCT 602
Query 597 TCCAAGCCAAACTCCTCAAAGGGTCTCTTTTCCACTCTCTAGACGACCCAAATAAGTA 654
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 603 TCCAAGCCAAACTCCTCAAAGGGTCTCTTTCCCACTCTCTAGACGACCCAAATAAGTA 660
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32601961403
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5