BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474546
Length=1354
Score E
Sequences producing significant alignments: (Bits) Value
AT1G54150.1 | Symbols: | E3 Ubiquitin ligase family protein | ... 2026 0.0
AT1G54160.1 | Symbols: NFYA5, NF-YA5 | nuclear factor Y, subuni... 183 3e-45
> AT1G54150.1 | Symbols: | E3 Ubiquitin ligase family protein
| chr1:20215432-20217489 FORWARD LENGTH=1386
Length=1386
Score = 2026 bits (1097), Expect = 0.0
Identities = 1285/1372 (94%), Gaps = 27/1372 (2%)
Strand=Plus/Plus
Query 1 CCGTGTCTACAACGTTGAAATTGGAAATTACCACTATGTCCTCGCCGGAGCGTGCTCTCT 60
|||||||||| ||||||||| | ||||||||||| |||||||||||||||||||||||||
Sbjct 15 CCGTGTCTACGACGTTGAAA-TCGAAATTACCACAATGTCCTCGCCGGAGCGTGCTCTCT 73
Query 61 TGAATCTATTGACGGACATCGCTCTCTCCTTCGACGGCGCAATCCTCGGACTGACCTTAG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 74 TGAATCTATTGACGGACATCGCTCTCTCCTTCGACGGCGCAATCCTCGGACTGACTTTAG 133
Query 121 CTATTAGCGCCGTCGGTTCTGCTCTCAAGTATGCCTCTACCAACGCGGCGTTGAACAAGA 180
|| ||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||
Sbjct 134 CTGTTAGCGCCGTCGGTTCTGCTCTCAAGTATGCTTCTACCAACGCCGCGTTGAAGAAGA 193
Query 181 TCAAAGAAGCACCCGAAGTCTCCGTTGCCGACCTCCGATCACTGCTTCCAGTTTCTGAAG 240
||||||| ||||||||||||||| || |||||||||||||||||||||| | ||||||||
Sbjct 194 TCAAAGATGCACCCGAAGTCTCCATTTCCGACCTCCGATCACTGCTTCCGGCTTCTGAAG 253
Query 241 ACAAATCTGAGACTAACGAT--C---ATG-G----GA--A---AATCGTTGTGGTTCGCG 285
||||||| |||||||||||| | | | | || | |||||||||||||||||
Sbjct 254 ACAAATCAGAGACTAACGATAACAGGAAGAGCAATGATCAGCGAATCGTTGTGGTTCGCG 313
Query 286 GAGTCGTGAAACCGAAATTTTCCGGAGATGAGAGTCACAAGAACAACAACGTGTTAATCT 345
||||||| ||||||||| ||||||| |||||| || ||||||||||||||||||||||||
Sbjct 314 GAGTCGTCAAACCGAAAATTTCCGGTGATGAGGGTTACAAGAACAACAACGTGTTAATCT 373
Query 346 CTCCGGAGACTGGAGATAAAGCTCTTATCATCCAGAGAACGCAAACTTATGTGTATAGTG 405
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 374 CTCCGGAGACTGGAGATAAAGCTCTTATCATTCAGAGAACGCAAACTTATGTGTATAGTG 433
Query 406 GATGGAAGAGATTGTTTCAGTCAACTGGTCACCGGTTTATGTTGGAGAGATCAATGCGCA 465
|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 434 GATGGAAGAGATTGTTTCAGTCCACTGGTCACCGGTTTATGTTGGAGAGATCATTGCGCA 493
Query 466 AACACGGAGCTGATTTTATGAGAACGGTCCCATTTGTCATTGTTGGAAAGGATCAACAAT 525
||||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 494 AACACGGTGCTGATTTTACGAGAACGGTCCCATTTGTCATTGTTGGAAAGGATCAGCAAT 553
Query 526 CGCAGTCTACTTTTCTCGATGTTAACATGGATGGTTCAAGGCAACCTCTTCCGCTTACCA 585
|| | |||| |||| ||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 554 CGAACTCTAGTTTTGTCGCTGTTAACATGGATGGCTCAAGGCAACCTCTTCCGCTTACCA 613
Query 586 CTGTGTATAATCGCTTGCAGCCTATTAATTCTTCGTTTCTTCAAGCCTTTTTGTTCCCTG 645
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 614 CTGTGTATAATCGCTTGCAGCCTATTAATTCTTCGTTTCTTCAAGCCTTTTTGTACCCCG 673
Query 646 ATTATCCTGTCGGTCTGCTTGATATAGAGAAGATTTTACCTCCTGGGAAAGATATAACAG 705
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 674 ATTATCCTGTTGGTCTGCTTGATATAGAGAAGATTTTACCACCTGGGAAAGATATAACAG 733
Query 706 CTGTTGGCATCTGCAGTTTTAATAATGGAGTTCCTGAAATCAAATCGTGCCAAGATCTTC 765
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 734 CTGTTGGCATCTACAGTTTTAATAATGGAGTTCCTGAAATCAAATCGTGCCAAGATCTTC 793
Query 766 CTTATTTCTTATCAGAGATGACCAAGGACAAGATGATTGAGGATCTTATGGATCAGACCA 825
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 794 CTTATTTCTTATCAGAGATGACCAAGGACAAGATGATTGAGGACCTTATGGAACAGACCA 853
Query 826 GCTTTATATTCTTTGGCAGTGTTATCTTGGGCATTGTGTCTGTTGGCATCCTTAGCTATG 885
|||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 854 ACTTTATATTCTTGGGCAGCGTTATCTTGGGCATTGTGTCTGTTGGCATCCTTAGCTATG 913
Query 886 CTGCTGTCAGGACCTGGAATAAATGGAAACAATGGAACCGTCAGAGAGACCTGCCACAGA 945
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 914 CTGCTGTCAGGACCTGGAATAAATGGAAACAATGGAACCATCAGAGAGAACTGCCACAGA 973
Query 946 GACCAAACGAACCTGTGGTCGATGATGAACCTGAAGATGCAGATGAAATCCCAGATGGAG 1005
|||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 974 GACCGAACGATTCTGTGGTCGATGATGAACCCGAAGATGCAGATGAAATCCCAGATGGAG 1033
Query 1006 AATTGTGTGTGATCTGCGTGACAAGAAGGAGAGTACCTGCGTTTATTCCCTGTGGACATG 1065
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1034 AATTGTGTGTGATCTGCGTGTCAAGAAGGAGAGTACCTGCGTTTATTCCCTGTGGACATG 1093
Query 1066 TAGTATGTTGCAGG-GTATGTGCTTCAACCGTGGAACGAGAGTTAAACCCTAAGTGTCCA 1124
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1094 TAGTATGTTGCAGGCG-ATGTGCTTCAACCGTGGAACGAGAGTTAAACCCTAAGTGTCCA 1152
Query 1125 GTTTGTCTCCAGAGCATTAGGGGATCTATGCGTGTATATTACTCTTAATGACTCTGAATC 1184
|||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 1153 GTTTGTCTTCAGAGCATTAGGGGATCTATGCGTGTATATTACTCTTAGTGACCCTGAATC 1212
Query 1185 TTCTCTCATTGTATGTATTAGGGTAATGCAATTTGAACTCTCAGAGAATCGGAAAGTTTT 1244
||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||
Sbjct 1213 TTCTCTCATTGTATGTAATAGGGTAATGCAATTTGTACTCTCAGAGAATCGGAA-GTT-- 1269
Query 1245 AATTAACAAAATAGTTTGACAATGATTTGAAAGTTCTTCAAGCCACTCTATATTGAGTGA 1304
|| |||||||||||||||||||||||||||||| ||||| ||||| |||| ||||||
Sbjct 1270 AA----CAAAATAGTTTGACAATGATTTGAAAGTTCGTCAAGTCACTCAATATAGAGTGA 1325
Query 1305 GAGATTGCAGAGGATATGAAAGGAAAGTTTT-AAA-GGAAGAAATTTTGTAA 1354
||||||| |||||||||||||| |||||||| ||| ||||||||||||||||
Sbjct 1326 GAGATTGTAGAGGATATGAAAGCAAAGTTTTTAAAAGGAAGAAATTTTGTAA 1377
> AT1G54160.1 | Symbols: NFYA5, NF-YA5 | nuclear factor Y, subunit
A5 | chr1:20217336-20219452 REVERSE LENGTH=1462
Length=1462
Score = 183 bits (99), Expect = 3e-45
Identities = 136/152 (89%), Gaps = 9/152 (6%)
Strand=Plus/Minus
Query 1205 GGGTAATGCAATTTGAACTCTCAGAGAATCGGAAAGTTTTAATTAACAAAATAGTTTGAC 1264
||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||
Sbjct 1462 GGGTAATGCAATTTGTACTCTCAGAGAATCGG-AAG------TTAACAAAATAGTTTGAC 1410
Query 1265 AATGATTTGAAAGTTCTTCAAGCCACTCTATATTGAGTGAGAGATTGCAGAGGATATGAA 1324
|||||||||||||||| ||||| ||||| |||| ||||||||||||| ||||||||||||
Sbjct 1409 AATGATTTGAAAGTTCGTCAAGTCACTCAATATAGAGTGAGAGATTGTAGAGGATATGAA 1350
Query 1325 AGGAAAGTTTT-AAA-GGAAGAAATTTTGTAA 1354
|| |||||||| ||| ||||||||||||||||
Sbjct 1349 AGCAAAGTTTTTAAAAGGAAGAAATTTTGTAA 1318
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66666323760
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5