BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474549
Length=2065
Score E
Sequences producing significant alignments: (Bits) Value
AT1G54170.1 | Symbols: CID3 | CTC-interacting domain 3 | chr1:2... 2976 0.0
> AT1G54170.1 | Symbols: CID3 | CTC-interacting domain 3 | chr1:20221060-20225948
REVERSE LENGTH=2267
Length=2267
Score = 2976 bits (1611), Expect = 0.0
Identities = 1906/2044 (93%), Gaps = 37/2044 (2%)
Strand=Plus/Plus
Query 22 GTTGATTTCAGCTTTGTTGAGGTTAAAGCAACTATGAAGCCTGTTCTTCACTCGGGCTCT 81
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 178 GTTGATTCCAGCTTTGTTGAGGTTAAAGCAACTATGAAGCCTGTTCTTCACTCGGGTTCT 237
Query 82 TCATCCAATGGATTTTCACACAGAAGAGTTGAAAAAGAGAC-TGGGATGAATAACGCACA 140
||||||||||||||||||||||| ||| ||||||| ||| | | ||||||||||||||||
Sbjct 238 TCATCCAATGGATTTTCACACAGGAGATTTGAAAAGGAGGCAT-GGATGAATAACGCACA 296
Query 141 GCCTTCTGCGGACACTACAGAAAACGGTTGGGAAGCTGGAAGTGTGGATACCCTTTCTCA 200
|||||||| |||| |||||||||||||||||| |||| |||||||||||||| ||||||
Sbjct 297 GCCTTCTGTTGACAATACAGAAAACGGTTGGGACGCTGAAAGTGTGGATACCCCTTCTCA 356
Query 201 CAAGCTGTTAGTGTATTTCACAACTTGTAATATTGGACATCAGGTAGAAGTTCATCTCAA 260
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 GAAGCTGTTAGTGTATTTCACAACTTGTAATATTGGACATCAGGTAGAAGTTCATCTCAA 416
Query 261 AAATGGATCGGTTTACAGTGGCATATTTCATGCTGCTGATGTGGAGAAGGATTTTGGAAT 320
||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 417 AAATGGATCTGTTTACAGCGGCATATTTCATGCTGCTAATGTGGAGAAGGATTTTGGAAT 476
Query 321 TATTTTGAAAATGGCATGCTTGATGAGGGATTCACGGGGAACCAAATCCCGTTCGCCGCT 380
||||||||||||||||||||||| ||||||||||| |||||||||||||| | |
Sbjct 477 CATTTTGAAAATGGCATGCTTGATTAGGGATTCACGAGGAACCAAATCCCG-T----AC- 530
Query 381 TGTCAGCAAGCCACCTTCAAAGATACTCATTATCCCTGCTGACGAACTTGTGCAAGTTAT 440
||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 531 TGTCAGCAAGCCATCTTCAAAGCTACTCAAAATCCCTGCTGACGAACTTGTGCAAGTTAT 590
Query 441 AGCTAAGGACCTTCCTGTATCCAGCAATAACGTCTCAGATTCTGTTCAGTGCGAGAAGCC 500
|||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||| ||
Sbjct 591 AGCTAAGGACCTTCCTCTATCCAGCGATAGCGTCTCAGATTCTGTTCAGTGCGAGAAACC 650
Query 501 TTTAGAGCTGTTGACAGACTCTCTGATATCACAGTTTTATAATGTTGATTTGGAAAGAGA 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 TTTAGAGCTGTTGACAGACTCTCTGATATCACAGTTTTATAATGTTGATTTGGAAAGAGA 710
Query 561 GCTGAAACCTTGGGTACCTGATGAAGATGGTCCAGACTGTTCAGATCTGGAGAATGTGTT 620
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 711 GCTGAAACCTTGGGTACCTGATGAAGATGTTCCAGACTGTTCAGATCTGGAGAATGTGTT 770
Query 621 TGATGATCCTTGGAAGAGGGGCTGGAATCAGTTTGAGGTCAATAAGACATTATTTGGAGT 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 771 TGATGATCCTTGGAAGAGGGGCTGGAATCAGTTTGAGGTCAATAAGACATTATTTGGAGT 830
Query 681 AACAAGCACTTTTGATGAGGAACTGTATACCACAAAACTTGAGAGAGGTCCTGGAACGAG 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 831 AACAAGCACTTTTGATGAGGAACTGTATACCACAAAACTTGAGAGAGGTCCTGGAACGAG 890
Query 741 GGAGCTAGAAGAGCAAGCCTTGAGGATTGCGAGAGAGATTGTGGGTGAGAATACTCGAGA 800
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 891 GGAGCTAGAAGAGCAAGCCTTAAGGATTGCGAGAGAGATTGTGGGTGAGAATACCCGAGA 950
Query 801 TCTTCACGTAGCAGAGGAAAGAGGGCTCCAGCTTAGTGGAAAGTTTGATATTGATGAGGA 860
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 951 TATTCACGTAGCAGAGGAAAGAGGGCTCCAGCTTAGTGGAAAGTTTGATATTGATGAGGA 1010
Query 861 AACCAAATACTCATCGGTCTGTACGGCTAATAGATTTGATGATACATGTTATGAAGACGA 920
|||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||
Sbjct 1011 AACCAAATACTCATCGGTCTGTGCGACTAATAGATTTGATGATACGTGTTATGAAGACGA 1070
Query 921 --A-GACGAAGAAGAAGACATATTGTTGGATTGCTGCAACAATTTGACTTTTGGTGACTC 977
| || ||||||||||| ||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1071 TGAAGAAGAAGAAGAAGATATATTATTGGATTGCTGCAACAATTTGACTTTTGGTGATTC 1130
Query 978 TTCTGCTTCTGATGGCAAGAAACCTGCTTCAACTGGCAAGGTCTACGAAGAAACATGGGG 1037
||||||||||||||||||| ||||||||||||||||||| |||| ||||| |||||||
Sbjct 1131 TTCTGCTTCTGATGGCAAGGAACCTGCTTCAACTGGCAAATTCTATGAAGATTCATGGGG 1190
Query 1038 TGACAGCCTGCATTTACGGAATATCAACATTGTAGACCAGAGCTGGTCGAACTCAAATAA 1097
|||||||||||||||||||| || ||| || ||||| |||||||||||||||||||||||
Sbjct 1191 TGACAGCCTGCATTTACGGAGTAACAAAATGGTAGATCAGAGCTGGTCGAACTCAAATAA 1250
Query 1098 GCATACTCACCAGCTTATGTCTGAACAGCCATCCAAAGATTTTCCTGTTGCAGGAAACAA 1157
|||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 1251 GCATACTCGCCAGCTTATGTCCGAACTGCCATCCAAAGATTTTCCTGTTGCAGGAAACAA 1310
Query 1158 AATCAGGAATGAGAGCCAGCTTGGTGAGCAAAGAAAGAGCAAATTTCTAGGGGCTTCCCT 1217
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1311 CATCAGGAATGAGAGCCAGCTTGGTGAGCAAAGAAAGAGCAAATTCCTAGGGGCTTCCCT 1370
Query 1218 TTATAGAAAGCCATCTGAGGAATCAGTGTCTGGTCTTGAAGATGCACCACCATCTGAGAA 1277
|| || |||||||||||||||||||||||||||| ||||||||||||||||| ||| |||
Sbjct 1371 TTTTAAAAAGCCATCTGAGGAATCAGTGTCTGGTTTTGAAGATGCACCACCACCTGTGAA 1430
Query 1278 GCCAAGTTTCACTGCTGGAAGACTCGGTCTACTCTCTGACAGAGCAAAATCTGAGAGCTC 1337
||||||||||| || ||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 1431 GCCAAGTTTCATTGATGGAAGACTCGGTCTACTCTCTGACAGAGCAAAGTCTGAGAACTC 1490
Query 1338 TTCTGGGTGGCCTGGAAGCTCCCTTTCTAGAAATTCAGAAAACTCTGCAGCTTCCTCAGC 1397
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1491 TTCTGGGTGGCCTGGAAGCTCCATTTCTAGAAATTCAGAAAACTCTGCAGCTTCCTCAGC 1550
Query 1398 ATCAAATCGTCCAATACTATCACCAAGCTCTTCAATTGGTTCTTTATCATCTGAAAAATC 1457
|||||||| ||||||||| |||||||||||||| |||||||||||||| ||||||||
Sbjct 1551 ATCAAATCTTCCAATACTGTCACCAAGCTCTTCG---GGTTCTTTATCATCAGAAAAATC 1607
Query 1458 CACACTCAACCCAAATGCTAAGGAATTTAAACTGAACCCCAACGCAAAGAGTTTCAAGCC 1517
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1608 CACACTCAACCCAAATGCTAAGGAATTTAAACTGAACCCTAACGCAAAGAGTTTCAAACC 1667
Query 1518 ATCTTCC--C--CATCA-G-C-TAAAAGTCCTCAATCTCCAGTCCCAGACGGATCATTCT 1570
|||| || | || || | | | || |||||||||||||||| |||||||||||||
Sbjct 1668 ATCT-CCATCAGCAACACGTCCTCAATCTCCTCAATCTCCAGTCTTTGACGGATCATTCT 1726
Query 1571 ATTATCCTCCTGTTCCACCCATGCCAGGATTACGTATTCGATTCGGAATGGGAGCAGCAT 1630
||||||||||||||||||||||||||||| ||| |||||||| ||||| |||||||||||
Sbjct 1727 ATTATCCTCCTGTTCCACCCATGCCAGGACTACATATTCGATACGGAACGGGAGCAGCAT 1786
Query 1631 TCCCTGGACAACAACACCCAATGATGTATAATAATACAACACAGCTTAGTCCTAATCAAA 1690
||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 1787 TCCCTGGGCAACAACACCCAATGATGTATAACAATACAACACAGCTTAGTCCGAATCAAA 1846
Query 1691 CATATTATTCTCCAAATAGTCCACAGTACCCACAACAGATGATGGTTACTCAACAGAGAC 1750
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 1847 CATATTATTCTCCAAATAGTCCACAGTACCCACAACCGATGATGGTTACTCAGCAGAGAC 1906
Query 1751 CGGTCTTGTTCATGCCGCCAACGCCATACCAACCGGAGATGCCATACAATGGAAGAGACT 1810
| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1907 CAATCTTGTTCATGCCGCCAACGCCATACCAACCGGAGATGCCATACAAAGGAAGAGACT 1966
Query 1811 CTTATTAGCTTTTGGCCAAAACCATGACTGGTGGTGGCTGGCACAAGGGAAGGTCTCGAA 1870
||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||
Sbjct 1967 CTTATTAGCTTTTGGCCAAAACCATGAATGGTGGTGGC----ACAAGAGAAGGTCTCGAG 2022
Query 1871 TATTCTGATGGAATTGGtttcatttaatttactttatttt-atttatttc-aa-gcaccg 1927
|||||||||||||||||||||||| ||||||||||| ||||||||| || ||||||
Sbjct 2023 ----CTGATGGAATTGGTTTCATTTAATGTACTTTATTTTTATTTATTTCCAAAGCACCG 2078
Query 1928 aatcttttcatttttatt-taattattttta-aatttgatgtgatggtgatttagtttgt 1985
|||||||||||||||||| ||| || | |||| |||||||||||||||||||||||
Sbjct 2079 AATCTTTTCATTTTTATTCTAAA-ATGAACACAATT-GATGTGATGGTGATTTAGTTTGT 2136
Query 1986 ttaggtattaGACTAGATTTTACATTAGATTCTTGCTGATCTCATTTCTTTATTCACTTG 2045
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2137 TTAGGTATTAGACTAGATTTTACATTAGATTCGTGCTGATCTCATTTCTTTATTCACTTC 2196
Query 2046 TGTT 2049
||||
Sbjct 2197 TGTT 2200
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102358911255
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5