BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474551
Length=1261
Score E
Sequences producing significant alignments: (Bits) Value
AT1G54200.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1524 0.0
AT3G13980.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 108 2e-22
> AT1G54200.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G13980.1);
Has 1084 Blast hits to 581 proteins in 136 species: Archae
- 0; Bacteria - 72; Metazoa - 212; Fungi - 78; Plants - 102;
Viruses - 0; Other Eukaryotes - 620 (source: NCBI BLink).
| chr1:20235712-20237065 FORWARD LENGTH=1354
Length=1354
Score = 1524 bits (825), Expect = 0.0
Identities = 1128/1263 (89%), Gaps = 66/1263 (5%)
Strand=Plus/Plus
Query 1 AACAAAGCGTGCctcttctctctctcttcatcattctcatc-a----tcttcttcaccac 55
||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||
Sbjct 23 AACAAAGCGTGCCTCTTCTCTCTTTCTTCATCATTCTCATCAAGCTTTCTTCTTCACCAA 82
Query 56 attcccaacattatcattcccttcttcCTCTATAAAGAATCATCACTTCCTTCTTCTTC- 114
|||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 83 ATTCCCAACACTATCATTCCCTTCTTCCTCTATAAAGAATCATCACTT-CTTCTTCTTCT 141
Query 115 CCATGGATCCTTGGGATAAC-TATAACAAACCAATAGACCACC-ACA--GTCTCCGTAAC 170
| ||||||||||||||| || ||||||| |||| ||||||||| ||| |||||||||||
Sbjct 142 CAATGGATCCTTGGGAT-ACTTATAACATACCACTAGACCACCAACACCGTCTCCGTAAC 200
Query 171 CGCCGTGACCACCGTCATCCTTCTTTCTCCTCCT-CTCTCCTCGACCAAATCTACCGCTC 229
||||||||||||||||||||||| ||||||| || |||||||||||||||| ||||||||
Sbjct 201 CGCCGTGACCACCGTCATCCTTCCTTCTCCT-CTACTCTCCTCGACCAAATTTACCGCTC 259
Query 230 CATCGACGATTCCTCTACCAACTCCTCCTCC--CAG---AACC--GCGGT--G-A---CG 276
|||||||||||||||||| |||||||| ||| || |||| | | | | ||
Sbjct 260 CATCGACGATTCCTCTACTAACTCCTCATCCATGAGAAAAACCAAAC-ATCAGAACCGCG 318
Query 277 A-GACTCGC--GTTTCTGCTAACCGTCGCGGAACCGCCAACGGTTTCAACAGATCCAAGA 333
| ||| ||| |||||||||||||| | | | || ||| |||||||||||||||||
Sbjct 319 AGGACACGCGTGTTTCTGCTAACCG-C-C-G---CG---ACGATTTCAACAGATCCAAGA 369
Query 334 ATCTTATTAAAACCATAGAACCTGTTTTCTTTAAACATTCGAGCTCTAGCTCATCTGACT 393
||| ||||||||||||||||||||||||| |||||||| ||||| ||||| |||||||
Sbjct 370 ATC---TTAAAACCATAGAACCTGTTTTCTTCAAACATTCAAGCTCAAGCTCCTCTGACT 426
Query 394 CAAGCGGTTTCTCTTCTTCAGAGTCTGATTCTTTCTACAGGCGATCTAAATCCTCGCCGG 453
||||||| ||||| ||||| |||||||||| ||||||||| |||||||||||||||||||
Sbjct 427 CAAGCGGATTCTCGTCTTCCGAGTCTGATTATTTCTACAGACGATCTAAATCCTCGCCGG 486
Query 454 CGATTTCTCATCCTAAACCGATTCGAGCCACCGTCGAGA-GATTCGAACGATCTCCTCAG 512
|||||||||||||||||||||| ||| ||||||| || | |||||||| |||||||||||
Sbjct 487 CGATTTCTCATCCTAAACCGATACGAACCACCGTGGA-ACGATTCGAAAGATCTCCTCAG 545
Query 513 AACCACCGACTTAAC---AG---TAAACAAGAACATGGAAGCTTTCTCAAAACGAAATCT 566
|| ||||||| |||| || |||||||||||||||||||||||||||||||||||||
Sbjct 546 AATCACCGACCTAACAGTAGTAATAAACAAGAACATGGAAGCTTTCTCAAAACGAAATCT 605
Query 567 AAAGCTTTGAAGATTTATAGCGATTTGAAGAAAGTTAAACAACCGATCTCTCCCGGTGGT 626
||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 606 AAAGCGTTGAAGATTTATAGCGATTTGAAGAAAGTGAAACAACCGATTTCTCCCGGTGGT 665
Query 627 CGTCTCGCTACTTTCCTTAACTCCATATTCACCGGCGCCGGAAACACTAAAAAGCTTAAC 686
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 666 CGTCTCGCTACTTTCCTTAACTCCATATTCACCGGCGCCGGAAACACTAAAAAACTTAAC 725
Query 687 AAAATCAACACCACCGTCACTTCTGCCA---CCGTCGCCGCCACAGCGTCATCAACCACC 743
||||||||||| ||||||||||| ||| ||| ||||||| ||||||||||||||||
Sbjct 726 AAAATCAACACAACCGTCACTTCCACCACCGCCGCCGCCGCCGCAGCGTCATCAACCACT 785
Query 744 ACATGCTCCTCTGCATCGTCATTCTCCAGATCTTGCTTGAGCAAAACGCCATCGTCTAGC 803
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 786 ACATGCTCCTCTGCTTCATCATTCTCCAGATCTTGCTTGAGCAAAACGCCATCGTCTAGC 845
Query 804 GAAAAATCGAAAAGATCCGTACGGTTTTGTCCCGTTAACGTCATCTTCGACGAAGACTCC 863
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 846 GAAAAATCGAAAAGATCCGTACGTTTTTGTCCCGTCAACGTCATCTTCGACGAAGACTCC 905
Query 864 TCC---TCCAAGTACAACAAGAACAAAGTGTACGGAAACAACGAACGTGAATATGAATCC 920
||| | ||| |||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 906 TCCAAGTACAACAACAAGAACAACAAAGTGTACGGAAACAACGAACGTGAATATGAATCC 965
Query 921 ACTCGTCATACTCTAGAGATCAGAGTCATGGAAGAGAATCGTCGCGTAATAGAAGCAGCT 980
| ||||||||||||||||| | |||||||||||||||||||||| ||||| |||||||||
Sbjct 966 ATTCGTCATACTCTAGAGAACCGAGTCATGGAAGAGAATCGTCGTGTAATCGAAGCAGCT 1025
Query 981 AAAGAACTTCTGAGAACTTATCAGAAGAAGAATAAAGACGTCGTTGAAATCTCCGGCGAA 1040
|||||||||||||||| ||| ||||||||||||||||| ||| ||||| |||||| ||||
Sbjct 1026 AAAGAACTTCTGAGAAGTTACCAGAAGAAGAATAAAGAAGTCATTGAAGTCTCCGTCGAA 1085
Query 1041 GACGACGAC-AA--CGA---TGATG---CGTTGAGTTGCACAAGCTCTGATTTGTTCGAG 1091
||||| || || ||| ||||| ||||||||||||||||||||||| ||||||||
Sbjct 1086 GACGATGAAGAAGACGACGATGATGATGCGTTGAGTTGCACAAGCTCTGATCTGTTCGAG 1145
Query 1092 TTGGATAATTTGTCGGCGATAGGGATCGATAGGTATCGAGAAGAGCTTCCGGTTTACGAA 1151
||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||
Sbjct 1146 TTGGATAATTTGTCGGCGATAGGAATCGATAGGTATAGAGAGGAGCTTCCGGTTTACGAA 1205
Query 1152 ACAACTCGCTTGAACACTAATCGTATAATTTCAAGATGATTATAATAATAAATTACTTGG 1211
|||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||
Sbjct 1206 ACAACTCGCTTGAACACTAATCGTATCATTTCTAGATGATTATAATAATTAATTACTTGG 1265
Query 1212 TTT 1214
|||
Sbjct 1266 TTT 1268
> AT3G13980.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G54200.1);
Has 1485 Blast hits to 418 proteins in 98 species: Archae
- 0; Bacteria - 6; Metazoa - 246; Fungi - 61; Plants - 107;
Viruses - 6; Other Eukaryotes - 1059 (source: NCBI BLink). |
chr3:4619038-4620262 REVERSE LENGTH=1225
Length=1225
Score = 108 bits (58), Expect = 2e-22
Identities = 73/80 (91%), Gaps = 1/80 (1%)
Strand=Plus/Plus
Query 178 ACCACCGTCATCCTTCTTTCTCCTCCTCTCTCCTCGACCAAATCTACCGCTCCATCGACG 237
|||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 38 ACCACCGTAACCCTTCTTTCTCCTCCACTCTCCTCGACCAAATCTACCGCTCCATCGACG 97
Query 238 ATTCCTCTACCAACTCCTCC 257
||||||| || |||||||
Sbjct 98 ATTCCTCCCCCC-CTCCTCC 116
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61997673075
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5