BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg474552

Length=513
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G54215.1 | Symbols:  | proline-rich family protein | chr1:20...   658    0.0  


> AT1G54215.1 | Symbols:  | proline-rich family protein | chr1:20243118-20243627 
FORWARD LENGTH=510
Length=510

 Score =  658 bits (356),  Expect = 0.0
 Identities = 462/513 (90%), Gaps = 7/513 (1%)
 Strand=Plus/Plus

Query  1    ATGGGTTTTCTTCAATCTCTCTTCAGATCTCGGAGCCTAAATATTTTGATCCTCGCTCTG  60
            |||||||||||||||||||||||| |||||||||||||  || |||| || |||||||||
Sbjct  1    ATGGGTTTTCTTCAATCTCTCTTCGGATCTCGGAGCCTCTATGTTTTCATTCTCGCTCTG  60

Query  61   TTTTTCAGCAGTAATAGTTTCCCT-CTCGTCCAATCACAAGACCCACCTTTCATTCCACA  119
            ||||||| || | || |||| ||| ||||||||||||||||||||||||||  |||||||
Sbjct  61   TTTTTCACCATTCATTGTTT-CCTCCTCGTCCAATCACAAGACCCACCTTTGTTTCCACA  119

Query  120  ATctcctccgcctccaccgccacctccaccaccaccgccgcctcctcctcctcctccacc  179
            ||||||||| || ||||| || ||||| || |||||||||   ||||||||||| |||||
Sbjct  120  ATCTCCTCCTCCACCACCACCGCCTCCTCCTCCACCGCCG---CCTCCTCCTCCACCACC  176

Query  180  accaccaccgccaccacctGTCAATGTGAGCGTCGATACAGGCACTGCTCCACCACCTCC  239
            |||||| || || ||| |||||||| |||||||||| ||||||| | ||||||| |||||
Sbjct  177  ACCACCTCCTCCGCCAGCTGTCAATATGAGCGTCGAAACAGGCATTCCTCCACCGCCTCC  236

Query  240  TCCAGTCACGGATATGATTAAGCCTCTGTCTTCTCCGCCGCCACCTAAACCACCACCGAG  299
            |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct  237  TCCAGTCACGGATATGATTAAGCCTCTGTCTTCTCCGCCGCCGCCTCAACCACCACCGAG  296

Query  300  GTCACAATCC-CCTCCGCAGCCTCCCCAAAAGAACCTGCCACGGCGGCTTCCTCCTCCTC  358
            ||||||| || |||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct  297  GTCACAA-CCACCTCCGAAGCCTCCCCAAAAGAACCTGCCACGGCGGCATCCTCCTCCTC  355

Query  359  CTCGGCCTCCGGAGAAATTGAAAAGCGGTGGTTTAAACAAAGGGAAGACGGTGGGACTAG  418
            ||||| |||||||||||  |||||| | ||||||||||||||||||||||||||||||||
Sbjct  356  CTCGGTCTCCGGAGAAACCGAAAAGAGATGGTTTAAACAAAGGGAAGACGGTGGGACTAG  415

Query  419  TCTTTGTTGGGTTGATAGCAATGTTGCAGGTCCTCGTTGTTGTCTTCTTGGTTTTCAAGA  478
            ||||||||||||| |||||||||||||||||  | |||||||| ||||||||||||||||
Sbjct  416  TCTTTGTTGGGTTAATAGCAATGTTGCAGGTTATTGTTGTTGTATTCTTGGTTTTCAAGA  475

Query  479  GAAAACAGCTTTTCAGCTTGAAAGACACTAATT  511
            |||| |||||| |||||||||||||||||||||
Sbjct  476  GAAAGCAGCTTCTCAGCTTGAAAGACACTAATT  508



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24514263736


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5