BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474553
Length=821
Score E
Sequences producing significant alignments: (Bits) Value
AT1G54217.2 | Symbols: | Ribosomal protein L18ae family | chr1... 811 0.0
AT4G26060.1 | Symbols: | Ribosomal protein L18ae family | chr4... 100 2e-20
> AT1G54217.2 | Symbols: | Ribosomal protein L18ae family | chr1:20243931-20245404
REVERSE LENGTH=811
Length=811
Score = 811 bits (439), Expect = 0.0
Identities = 656/751 (87%), Gaps = 54/751 (7%)
Strand=Plus/Plus
Query 102 TTCTTTCGATATGAA-T-G-CTA-ATTTAGAGGAACAAAGGAAAGGAAAGTATATTCTAA 157
|||||||| ||||| | | | | ||||||||||||||| ||||||||||||| ||||||
Sbjct 75 TTCTTTCGCCATGAATTCGAC-AGATTTAGAGGAACAAAAGAAAGGAAAGTATGTTCTAA 133
Query 158 TCCGTGATGATGGTGAGGACTCTGAGTTAGGCCATTTCTATAAGCCCCTTCCTTGCTTTG 217
|||||||||||| |||||||||||||||||| || ||||||||||||||||||||||| |
Sbjct 134 TCCGTGATGATGCTGAGGACTCTGAGTTAGGACAATTCTATAAGCCCCTTCCTTGCTTCG 193
Query 218 GTTGTGGAATCGGATGGTTCTCGTTTCTTCTTGGATTCGTCTTCCCATTTGCGTGGTATG 277
||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
Sbjct 194 GTTTTGGAATCGGATGGTTCTCGTTTCTTCTAGGATTCGTCTTCCCGTTTGCGTGGTACG 253
Query 278 TTGCTACATTTCTATATTTGA-CAAACTATTACCGTAGAGATCCTCGGGAAAGATCTGGT 336
||||||||||||| ||||||| | | |||||||| |||||||||||||||||||||||||
Sbjct 254 TTGCTACATTTCTTTATTTGATC-AGCTATTACCATAGAGATCCTCGGGAAAGATCTGGT 312
Query 337 CTTGCTGCCTCCGCTATAGCTGCTTTGATATTCTCTGTTGCACTTGTGATCACCGTGCTT 396
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 313 CTTGCTGCCTCTGCTATAGCTGCTTTGATATTCTCTGTTGCACTTGTGATCACCGTGCTT 372
Query 397 GTGCTTGTTTTCTCGGCTCGCTAGAGTCTTGTTACACTTTGCATATTCTTTCTGTGTTTC 456
|||||||||||||||| ||||||| |||||| |||| |||||||||||||||| |||||
Sbjct 373 GTGCTTGTTTTCTCGGGTCGCTAGGGTCTTGCTACAGATTGCATATTCTTTCTGAGTTTC 432
Query 457 AAAGGAAAACA---A-CTTCAAAAGTCTGTTTCCACACCAAGTGAAAAA---T--A-TTT 506
||||||||||| | |||| || ||||||||||||| ||||| ||||| | | |||
Sbjct 433 AAAGGAAAACAGCTAGCTTCTAA-GTCTGTTTCCACAACAAGTTAAAAAAACTTCAATTT 491
Query 507 CA--A---------C--TT--GAAGA-AGAGTACTGCTAGTCCTTTTT-GAATCAAAATT 549
| | | || ||||| || |||||||||||| ||||| |||||||||||
Sbjct 492 GATGAAGAGAATTTCGGTTTCGAAGAGAGTGTACTGCTAGTC-TTTTTAGAATCAAAATT 550
Query 550 TGGTTTGCTTTGTACATAAGTCAGTGTATACTTTTAAACAATTGAAATGAGATATATATA 609
||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||| |
Sbjct 551 TGGTTTGCTTTGTACATAAGTCAGTGTATACATTTAAACAATCGAAATGTGATATATA-A 609
Query 610 ACTCTTGGAGATTTATGTATTTTAAGCCAGACAAGAACCCTACCCAAGGTTATGT-CT-- 666
||||||||||| |||||||| |||||||||||| ||||||| |||||||||||| ||
Sbjct 610 -CTCTTGGAGATCTATGTATTGTAAGCCAGACAATAACCCTAGCCAAGGTTATGTACTTA 668
Query 667 -G---G-TTCTTATCTTCCTTGTTCAAAGTCTTTTCTGTCTTTCTTTTCTTATTGAACCT 721
| | |||||||||||||| ||||||| ||||| | |||||||| |||||||| |||
Sbjct 669 TGTCTGGTTCTTATCTTCCTTCTTCAAAG-CTTTT-T--CTTTCTTT-CTTATTGACCCT 723
Query 722 CAAGAAACAGAGAAAGGAATGGAATTAAGGGAAGAAGCTTTGACGATTAGGATTTGTATT 781
||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 724 CAAGAAACAGAGAAAAGAATGGAACTAAGGGTAGAAGCTTTGACGATTAGGATTTGTATT 783
Query 782 GCCTCTTATGTCTAGTGTTATTTAAATCATC 812
|||||| ||||| ||||| ||| |||||||
Sbjct 784 GCCTCT-ATGTC--GTGTTGTTTGAATCATC 811
> AT4G26060.1 | Symbols: | Ribosomal protein L18ae family | chr4:13214746-13216461
REVERSE LENGTH=858
Length=858
Score = 100 bits (54), Expect = 2e-20
Identities = 154/199 (77%), Gaps = 19/199 (10%)
Strand=Plus/Plus
Query 199 AAGCCCCTTCCTTGCTTTGGTTGTGGAATCGGATGGTTCTCGTTTCTTCTTGGATTC-GT 257
||||| ||||| ||||||||||||||||||||||||||||| ||||| ||||| || ||
Sbjct 420 AAGCCTCTTCCATGCTTTGGTTGTGGAATCGGATGGTTCTCCTTTCT-CTTGGGTTTTGT 478
Query 258 CTTCCCATTTGCGT--GGTA-TGTTGCTACA-TTTCTATATTT-GACAAACTATTACCGT 312
||||| ||| | | |||| | | || ||| ||| ||||||| | || ||| |||||
Sbjct 479 GTTCCC-TTT-CTTATGGTACTAT-GCAACACTTT-TATATTTCGGGAA-CTACTACCGC 533
Query 313 AGAG-ATCCTCGGGAAAGATCTGGTCTTGCTGCCTCCGCTAT-AGCTGCTTTGATATTCT 370
| || ||||| | |||||| | || |||||||| ||||| || | |||| || |||||
Sbjct 534 A-AGGATCCTAGAGAAAGAGCCGGCCTTGCTGCTTCCGCAATCA-CTGCGATGGGATTCT 591
Query 371 C--TGTTGC-ACTTGTGAT 386
| | |||| ||| |||||
Sbjct 592 CCCTCTTGCTACTAGTGAT 610
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39986381012
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5