BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg474555

Length=639
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G54260.1 | Symbols:  | winged-helix DNA-binding transcriptio...   466    1e-130


> AT1G54260.1 | Symbols:  | winged-helix DNA-binding transcription 
factor family protein | chr1:20256936-20259417 FORWARD LENGTH=1111
Length=1111

 Score =  466 bits (252),  Expect = 1e-130
 Identities = 296/317 (93%), Gaps = 3/317 (1%)
 Strand=Plus/Plus

Query  323  ACTGGTACGAGGAGCGACAAGACTTTAGGATGTTTTTGAGTGAGTGCCTGGCAATTCTCG  382
            ||||||||||||||| ||||||||||||||||||||||||||||||||||  ||||||||
Sbjct  557  ACTGGTACGAGGAGCAACAAGACTTTAGGATGTTTTTGAGTGAGTGCCTGATAATTCTCG  616

Query  383  TCTCTCAAGGCAAACTGGAAAAGGTATTATTAGATGGCTACAAGATCTCAGAATTAGAAA  442
            | ||||||||||||||||||||||   |||| ||| |||||||||| |||||||||||||
Sbjct  617  TTTCTCAAGGCAAACTGGAAAAGG---TATTGGATCGCTACAAGATATCAGAATTAGAAA  673

Query  443  ACAAAGTGATGGAAGTAGCACCAGAAGCTGTAGCAATGAAACTAGCAGAGTCAGATAACA  502
            |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  674  ACAAAGTGTTGGAAGTAGCACCAGAAGTTGTAGCAATGAAACTAGCAGAGTCAGATAACA  733

Query  503  AAAGGTTGATAGCAGCAGAGGCAGTCGAAGAAGAAGAACGGATGCAAAAGTTGGTTGAAG  562
            |||||||||||||||||||||||||||||||||||||||| ||||| ||||| || ||||
Sbjct  734  AAAGGTTGATAGCAGCAGAGGCAGTCGAAGAAGAAGAACGAATGCACAAGTTAGTAGAAG  793

Query  563  AAAGCCACACGATGCTTCAGTTATGCTTAGAAATCCACCAACAATGTGCTCTTGGCGAAG  622
            ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||
Sbjct  794  AAAGCCACACGATGCTTCAATTATGCTTAGAGATCCACCAACAATGTGCTCTTGGCCAAG  853

Query  623  AAGTTGTTCTACGGTAA  639
            | |||||||||| ||||
Sbjct  854  AGGTTGTTCTACTGTAA  870


 Score =  219 bits (118),  Expect = 4e-56
 Identities = 141/152 (93%), Gaps = 2/152 (1%)
 Strand=Plus/Plus

Query  101  AGAAACTGTTGAGTTATAGCCTGAGAATCCTTGTTTCTCAAGACAAACTCAAAAAGGTAC  160
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  407  AGAAACTGTTGAGTTATAGCCTGGGAATCCTTGTTTCTCAAGACAAACTCAAAAAGGTAC  466

Query  161  GAAATCGTTACAAAAT-TGAGATTACGAAAGCAACGAAGCCAACACTCACACTGCGCCCA  219
            |||||||||||||||| | || ||||||||||||  |||||||||||||| ||||| |||
Sbjct  467  GAAATCGTTACAAAATCTCAG-TTACGAAAGCAATTAAGCCAACACTCACCCTGCGTCCA  525

Query  220  AAAGATTCCACGAAGCCACTAGAGCTGCCAAA  251
            ||||||||||||||||||| |||| | |||||
Sbjct  526  AAAGATTCCACGAAGCCACCAGAGTTACCAAA  557



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30843766258


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5