BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474556
Length=369
Score E
Sequences producing significant alignments: (Bits) Value
AT2G07110.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 542 1e-153
AT3G44130.1 | Symbols: | F-box and associated interaction doma... 139 2e-32
AT3G46210.1 | Symbols: | Ribosomal protein S5 domain 2-like su... 124 5e-28
> AT2G07110.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: Ribosomal protein S5 domain 2-like superfamily protein
(TAIR:AT3G46210.6); Has 82 Blast hits to 82 proteins in
15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2;
Plants - 75; Viruses - 0; Other Eukaryotes - 5 (source: NCBI
BLink). | chr2:2952610-2953208 REVERSE LENGTH=453
Length=453
Score = 542 bits (293), Expect = 1e-153
Identities = 341/364 (94%), Gaps = 3/364 (1%)
Strand=Plus/Plus
Query 7 AATACAGACCTAAAGCAGGAACAAAGAAGAACGAAAATGCTGAGAAGGCTTGTTTTGAAG 66
||||| ||||||||||| |||| ||||||||||||||||||||||||||||| |||||||
Sbjct 92 AATACGGACCTAAAGCAAGAACGAAGAAGAACGAAAATGCTGAGAAGGCTTG-TTTGAAG 150
Query 67 TCATATGGAAGCCTTAAGCCGGATAGATTGGTAATCGTAAATGTGTTTCGTTGTTCAG-A 125
||||||||||||||||| ||||||||||||||||||||||||| |||| ||| ||||| |
Sbjct 151 TCATATGGAAGCCTTAAACCGGATAGATTGGTAATCGTAAATGCGTTTAGTTTTTCAGAA 210
Query 126 AGAAGGCTTGTTTTGTTGCTTGAGAAAAGTTGAAAGGGAGTATAAAACGATACTCAAAAG 185
|| ||||||||||||| |||||||||||||||||| |||||| |||||||||| |||||
Sbjct 211 AG-AGGCTTGTTTTGTCGCTTGAGAAAAGTTGAAAAAGAGTATGAAACGATACTGAAAAG 269
Query 186 GACGTTACAGAGTATTTGTGTTTTGACAGTTGTTCCAAATAGCACCACCTCAGTGATAAT 245
|||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||
Sbjct 270 GACGCTACAGAGTATTTGTGTTTTGAGAGTTGTTCCAAATACCACCACCTCAGTGATTAT 329
Query 246 TCAGGTTGTACATGATGGTGGTTCTGTATCGTTTTTATGTTCCTTGCACCTTGGTAAATA 305
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 330 TCAGGTTGTACATGATGGTGGTTCTGTATCGTTTTTATGTTCCTTTCACCTTGGTAAACA 389
Query 306 TTTATTGATGCTGTCTGAAACACATATAATCCGGTATAAACAATGTCTGTTTGAGTATTT 365
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 390 TTTACTAATGCTGTCTGAAACACATATAATCCGGTATAAACAATGTCTGTTTGAGTATTT 449
Query 366 ATAG 369
||||
Sbjct 450 ATAG 453
> AT3G44130.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:15881870-15883638 FORWARD LENGTH=942
Length=942
Score = 139 bits (75), Expect = 2e-32
Identities = 91/98 (93%), Gaps = 3/98 (3%)
Strand=Plus/Plus
Query 1 CTGCAGAATACAGACCTAAAGCAGGAAC-AAAGAAGAACGAAAATGCTGAGAAGGCTTGT 59
||||| ||||| ||||||||||| |||| ||| |||||||||||||||||||||||||||
Sbjct 815 CTGCACAATACGGACCTAAAGCAAGAACGAAA-AAGAACGAAAATGCTGAGAAGGCTTGT 873
Query 60 TTTGAAGTCATATGGAAGCCTTAAGCCGGATAGATTGG 97
|| ||||||||||||||||||||| |||||||||||||
Sbjct 874 TT-GAAGTCATATGGAAGCCTTAAACCGGATAGATTGG 910
> AT3G46210.1 | Symbols: | Ribosomal protein S5 domain 2-like
superfamily protein | chr3:16976740-16978893 REVERSE LENGTH=1062
Length=1062
Score = 124 bits (67), Expect = 5e-28
Identities = 80/86 (93%), Gaps = 2/86 (2%)
Strand=Plus/Plus
Query 13 GACCTAAAGCAGGAAC-AAAGAAGAACGAAAATGCTGAGAAGGCTTGTTTTGAAGTCATA 71
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 259 GACCTAAAGCAGGAACGAAA-AAGAACGAAAATGCTGAGAAGGCTTGTTTTGAAGTCATA 317
Query 72 TGGAAGCCTTAAGCCGGATAGATTGG 97
||||||||| || |||| |||||||
Sbjct 318 TGGAAGCCTAAATCCGGGCAGATTGG 343
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17342373405
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5