BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474557
Length=678
Score E
Sequences producing significant alignments: (Bits) Value
AT1G54140.1 | Symbols: TAFII21, TAF9 | TATA binding protein ass... 1026 0.0
> AT1G54140.1 | Symbols: TAFII21, TAF9 | TATA binding protein associated
factor 21kDa subunit | chr1:20213967-20215223 REVERSE
LENGTH=766
Length=766
Score = 1026 bits (555), Expect = 0.0
Identities = 626/661 (95%), Gaps = 2/661 (0%)
Strand=Plus/Plus
Query 1 AGTCTTTCCCGATTCCTCGCCGCCGTTCATCAATCTCTCCGTCGTGTTTCTGCCATTACC 60
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1 AGTATTTCCCGATTCCTCGCCGCCGTTCATCAATCTCTCCGTCGTGTTTCTGCCACTAGC 60
Query 61 TCTCCTCCAAACTATCTCTCTCGCGTTAGTTGTTTAGGGATAAAAATGGCTGGAGAAGGT 120
||||| ||||||| |||||||||| ||||||||||||||||||| ||||| |||||||||
Sbjct 61 TCTCCACCAAACTTTCTCTCTCGCATTAGTTGTTTAGGGATAAACATGGCAGGAGAAGGT 120
Query 121 GAAGAAGATGTACCTAGACATGCTAAGACTGTGAAATCTTTGCTTAAGTCGATGGGTGTA 180
|||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||
Sbjct 121 GAAGAAGATGTACCTAGAGATGCTAAGATTGTGAAATCTCTGCTTAAGTCGATGGGTGTA 180
Query 181 GAAGACTACGAGCCTCGTGTGATTCACCAGTTTCTGGAGTTATGGTACCGGTATGTGGTC 240
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 181 GAAGACTACGAGCCTCGTGTGATACATCAGTTTCTGGAGTTATGGTACCGGTATGTGGTC 240
Query 241 GAAGTCTTGACAGATGCTCAGGTTTACTCAGAGCATGCTAGCAAATCCAACATTGACTGC 300
||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 241 GAAGTGTTGACAGATGCTCAGGTTTACTCAGAGCATGCTAGCAAACCCAACATTGACTGT 300
Query 301 GATGATGTCAAGCTCGCTATTCAATCCAAAGTTAATTTCAGCTTCTCACAGCCACCTTCA 360
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 301 GATGATGTGAAGCTCGCTATTCAATCCAAAGTTAATTTCAGCTTCTCACAGCCTCCTCCA 360
Query 361 AGAGAGGTTCT-ATTAGAGCTTGCTGCAAGCAGGAACAAGATCCCTCTGCCAAAATCGAT 419
||||||||||| || |||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 361 AGAGAGGTTCTGCTT-GAGCTTGCTGCAAGTAGGAACAAGATACCTCTGCCAAAATCGAT 419
Query 420 AGCAGGACCTGGTGTTCCACTCCCACCTGAACAGGACACATTGCTGAGCCCAAATTACCA 479
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 420 AGCAGGACCCGGTGTTCCACTCCCACCTGAACAGGACACATTGCTGAGCCCAAATTATCA 479
Query 480 GCTCGTGATACCCAAGAAGTCAGTGTCCACAGAACCTGAAGAAACCGAAGACGATGAAGA 539
|||||||||||| |||||||| || || |||||||||||||||||||| |||||||||||
Sbjct 480 GCTCGTGATACCGAAGAAGTCGGTTTCAACAGAACCTGAAGAAACCGAGGACGATGAAGA 539
Query 540 AATGACAGATCCTGGACAGTCCTCTCAAGaacaacaacagcaacaacaacaaGCATCAGA 599
|||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||
Sbjct 540 AATGACAGATCCTGGACAGTCCTCTCAAGAACAACAACAGCAGCAACAACAAACCTCAGA 599
Query 600 CCTTCCAAGCCAAACTCCTCAAAGGGTCTCTTTTCCACTCTCTAGACGACCCAAATAAGT 659
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 600 CCTTCCAAGCCAAACTCCTCAAAGGGTCTCTTTCCCACTCTCTAGACGACCCAAATAAGT 659
Query 660 A 660
|
Sbjct 660 A 660
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32802897991
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5