BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474560
Length=749
Score E
Sequences producing significant alignments: (Bits) Value
AT1G54290.1 | Symbols: | Translation initiation factor SUI1 fa... 998 0.0
AT4G27130.1 | Symbols: | Translation initiation factor SUI1 fa... 407 8e-113
AT5G54760.1 | Symbols: | Translation initiation factor SUI1 fa... 366 1e-100
> AT1G54290.1 | Symbols: | Translation initiation factor SUI1
family protein | chr1:20268485-20270107 REVERSE LENGTH=811
Length=811
Score = 998 bits (540), Expect = 0.0
Identities = 713/788 (90%), Gaps = 45/788 (6%)
Strand=Plus/Plus
Query 1 AAAATAAGAATATTGGTCCGAATTAAAACTTGTTCGATTTTGTAGCTCTTCCTCTCGTAA 60
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 28 AAAAGAAGAATATTGGTTCGAATTAAAACTTGTTCGATTTTGTAGCTCTTCCTCTCGTAA 87
Query 61 TttcttcttcttcttctttcAGACAGAAGCCTGCCTTTGTCCGAATTTGA-GGTTTCCAT 119
|||| ||||||||||||||||||||||||| ||||||||||||||||| | |||||||||
Sbjct 88 TTTCCTCTTCTTCTTCTTTCAGACAGAAGCTTGCCTTTGTCCGAATTT-AGGGTTTCCAT 146
Query 120 TTTTCCTTACC-TTCTTCCTTCAATCAAATAATCGAAACCCTAA--TC-TCTTGATCAGA 175
|||| ||| || ||||||||||||||||||| |||||||||||| || |||||||| |
Sbjct 147 TTTT-CTTTCCGTTCTTCCTTCAATCAAATACTCGAAACCCTAATCTCTTCTTGATC--A 203
Query 176 GGCCTTGGTCGATTTGCTTTCCCTTGTATTAACTTAAGGTTCATGTCTGATCTTGAAGTT 235
|||||| |||||||| || |||||||||| ||||||||||||||||||||||||||||||
Sbjct 204 GGCCTT-GTCGATTTACTGTCCCTTGTATCAACTTAAGGTTCATGTCTGATCTTGAAGTT 262
Query 236 CAAGTCCCCACTGCCTTTGATCCGTTTGCTGATGCAAATGCTGAGGACTCTGGGGCGGGA 295
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 263 CAAGTCCCCACTGCCTTTGATCCGTTCGCTGATGCAAATGCTGAGGACTCTGGGGCGGGA 322
Query 296 ACAAAGGAATACGTGCACATTCGTGTTCAGCAGCGTAATGGTAGAAAAAGCTTGACAACT 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 323 ACAAAGGAATACGTGCACATTCGTGTTCAGCAGCGTAATGGTAGAAAAAGCTTGACAACT 382
Query 356 GTTCAGGGACTTAAGAAAGAGTATAGCTATAGCAAGATACTTAAAGACCTTAAGAAAGAA 415
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 383 GTCCAGGGGCTTAAGAAAGAGTATAGCTATAGCAAGATACTTAAAGACCTTAAGAAAGAA 442
Query 416 TTCTGCTGCAATGGCACTGTTGTCCAGGACTCTGAATTAGGACAGGTTATTCAGCTTCAA 475
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 443 TTCTGCTGCAATGGCACCGTCGTCCAGGACTCTGAATTAGGACAGGTTATTCAGCTTCAA 502
Query 476 GGCGATCAGAGGAAGAACGTCTCTACGTTCCTTGTTCAGGCTGGGCTTGTGAAGAAGGAT 535
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 503 GGTGATCAGAGGAAGAACGTATCTACGTTCCTTGTTCAGGCTGGGCTTGTGAAGAAGGAT 562
Query 536 AACATCAAAATCCATGGTTTTTGAGCAATTCTAGAGATACTCGTTGTTCAACTTGTATTT 595
||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 563 AACATAAAAATCCATGGTTTTTGAGCAATTCTAGAGATACTCCTTGTTCAGCTTGTATTT 622
Query 596 ACCGAATCAGCCAGTCCCAAAT--A-TT-A-A-----TG-CTT---T-TATTA-T----- 634
|| | |||||||||||||||| | || | | | ||| | ||||| |
Sbjct 623 ACGGGATCAGCCAGTCCCAAAAGGAATTTATAAACCATTACTTAAATGTATTAATGCTTT 682
Query 635 -AT-AT-T---GTGTCAGaaaaaa-aaTCTAAAAGGTTGCTTATGAGTGAATATATAAAT 687
|| || | |||||| |||||| ||||||| || ||||||||||| | ||||||||||
Sbjct 683 TATTATGTATTGTGTCA-AAAAAATAATCTAATAGTTTGCTTATGAGCGTATATATAAAT 741
Query 688 GCATCAACTTTTGGTTTGCATTTGTA---GT-GTGAGA-TT-ATCAATAAAATTTGCTTT 741
| ||||||||||||| |||||||||| || ||| || || ||||||||||||||||||
Sbjct 742 GTATCAACTTTTGGTATGCATTTGTACTTGTAGTGTGAGTTTATCAATAAAATTTGCTTT 801
Query 742 GTGAATTG 749
||||||||
Sbjct 802 GTGAATTG 809
> AT4G27130.1 | Symbols: | Translation initiation factor SUI1
family protein | chr4:13604558-13606448 REVERSE LENGTH=848
Length=848
Score = 407 bits (220), Expect = 8e-113
Identities = 310/354 (88%), Gaps = 4/354 (1%)
Strand=Plus/Plus
Query 211 AAGGTTCATGTCTGATCTTGAAGTT--CAAGTCCCCACTGCCTTTGATCCGTTTGCTGAT 268
||| ||||||||||| |||| | || || ||||| |||||||| || ||||||||||||
Sbjct 244 AAGTTTCATGTCTGAACTTG-A-TTCCCAGGTCCCTACTGCCTTCGACCCGTTTGCTGAT 301
Query 269 GCAAATGCTGAGGACTCTGGGGCGGGAACAAAGGAATACGTGCACATTCGTGTTCAGCAG 328
|| |||||||||||||| || || ||||||||||| ||||| || |||||||| ||||||
Sbjct 302 GCGAATGCTGAGGACTCAGGTGCAGGAACAAAGGAGTACGTTCATATTCGTGTCCAGCAG 361
Query 329 CGTAATGGTAGAAAAAGCTTGACAACTGTTCAGGGACTTAAGAAAGAGTATAGCTATAGC 388
|| |||||||| |||||||||||||| || ||||| || ||||||||||| ||||| | |
Sbjct 362 CGGAATGGTAGGAAAAGCTTGACAACGGTCCAGGGGCTGAAGAAAGAGTACAGCTACACC 421
Query 389 AAGATACTTAAAGACCTTAAGAAAGAATTCTGCTGCAATGGCACTGTTGTCCAGGACTCT 448
||||||||||| ||||| ||||||||||| |||||||| || ||||| || || |||||
Sbjct 422 AAGATACTTAAGGACCTCAAGAAAGAATTTTGCTGCAACGGAACTGTGGTTCAAGACTCA 481
Query 449 GAATTAGGACAGGTTATTCAGCTTCAAGGCGATCAGAGGAAGAACGTCTCTACGTTCCTT 508
||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 482 GAACTCGGACAGGTTATTCAGCTTCAAGGCGATCAGAGGAAGAACGTCTCCACGTTCCTA 541
Query 509 GTTCAGGCTGGGCTTGTGAAGAAGGATAACATCAAAATCCATGGTTTTTGAGCA 562
|| |||||||||||||||||||| ||||||||||| ||||||||||| ||||||
Sbjct 542 GTCCAGGCTGGGCTTGTGAAGAAAGATAACATCAAGATCCATGGTTTCTGAGCA 595
> AT5G54760.1 | Symbols: | Translation initiation factor SUI1
family protein | chr5:22243864-22245770 FORWARD LENGTH=763
Length=763
Score = 366 bits (198), Expect = 1e-100
Identities = 312/367 (85%), Gaps = 8/367 (2%)
Strand=Plus/Plus
Query 206 AACTTAAGGTTCATGTCTGATCTTGAAGT-TCAAGTCCCCACTGCCTTTGATCCGTTTGC 264
||| |||| ||||||||||| |||| | | || || |||||||||||||||||||||||
Sbjct 158 AAC-TAAGTTTCATGTCTGAACTTG-ACTCCCAGGTTCCCACTGCCTTTGATCCGTTTGC 215
Query 265 TGATGCAAATGCTGAGGACTCTGGGGCGGGAACAAAGGAATACGTGCACATTCGTGTTCA 324
|||||| |||| ||||||||| || || |||||||| |||||||| || || ||||| ||
Sbjct 216 TGATGCGAATGTTGAGGACTCAGGTGCCGGAACAAAAGAATACGTTCATATCCGTGTCCA 275
Query 325 GCAGCGTAATGGTAGAAAAAGCTTGACAACTGTTCAGGGACTTAAGAAAGAGTATAGCTA 384
|||||| |||||||| |||||||||||||| || ||||| || ||||||||||| |||||
Sbjct 276 GCAGCGAAATGGTAGGAAAAGCTTGACAACCGTCCAGGGCCTGAAGAAAGAGTACAGCTA 335
Query 385 TAGCAAGATACTTAAAGACCTTAAGAAAGAATTCTGCTGCAATGGCACTGTTGTCCAGGA 444
|| |||||||||||| ||||| |||||||| || |||||||| |||||||| || |||||
Sbjct 336 TACCAAGATACTTAAGGACCTCAAGAAAGAGTTTTGCTGCAACGGCACTGTGGTTCAGGA 395
Query 445 CTCTGAATTAGGACAGGTTATTCAGCTTCAAGGCGATCAGAGG-AAGAACGTCTCTACGT 503
|| ||| | ||||||||||| ||||||||||| || || | | ||||||||||| || |
Sbjct 396 TTCAGAACTCGGACAGGTTATACAGCTTCAAGGTGACCA-ACGTAAGAACGTCTCCACAT 454
Query 504 TCCTTGTTCAGGCTGGGCTTG-TGAAGAAGGATAACATCAAAATCCATGGTTTTTGAGCA 562
||||||| |||||||| ||| ||||||||||||||||||| ||||||||||| | |||
Sbjct 455 TCCTTGTCCAGGCTGGT-TTGGTGAAGAAGGATAACATCAAGATCCATGGTTTCTAAGCT 513
Query 563 ATTCTAG 569
|| ||||
Sbjct 514 AT-CTAG 519
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36369522428
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5