BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474562
Length=818
Score E
Sequences producing significant alignments: (Bits) Value
AT1G55080.1 | Symbols: MED9 | MED9; BEST Arabidopsis thaliana p... 1033 0.0
> AT1G55080.1 | Symbols: MED9 | MED9; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G29580.1); Has 67203
Blast hits to 25757 proteins in 1293 species: Archae -
12; Bacteria - 4374; Metazoa - 24340; Fungi - 7940; Plants -
5927; Viruses - 273; Other Eukaryotes - 24337 (source: NCBI
BLink). | chr1:20553011-20554254 REVERSE LENGTH=925
Length=925
Score = 1033 bits (559), Expect = 0.0
Identities = 656/699 (94%), Gaps = 21/699 (3%)
Strand=Plus/Plus
Query 136 caacaacagtttcatctt---caacaacaacagacgcagcagcaacaacaacaatcccag 192
|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 225 CAACAACAGTTTCATCTTCAACAACAACAACAGACGCAGCAGCAACAACAACAATTCCAG 284
Query 193 -c-c-acaacaacaagagatgcaacaat-tccagcaattccaacaacagcaacacttcat 248
| | ||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 285 CCACAACAACAACAAGAGATGCAACAATAT-CAGCAATTCCAACAACAGCAACACTTCAT 343
Query 249 tcaacaacagcaattccaacaacaacaacGGTTGTTACAATCTCCTCCTCTTCAGACACA 308
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 344 CCAACAACAGCAATTCCAACAACAACAACGGTTGTTACAATCTCCTCCTCTTCAGCCACA 403
Query 309 GTCGTTGCAATCACCTCCGCCGCAACAGACGGTGGTTCATACGCCTCAATCTATGATGCA 368
|||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 404 GTCGTTACAATCACCTCCGCCGCAACAGACGATGGTTCACACGCCTCAATCTATGATGCA 463
Query 369 TACACCGCAGCAACAACAACAGTTGGTTCAAACTCCGGTGCAGACTCCGCAACAGCATCA 428
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 464 TACACCGCAGCAACAACAACAGTTGGTTCAAACTCCGGTGCAGACTCCTCAACAGCATCA 523
Query 429 GTCTTTAGCTTCTCATTTCCATCTCTATCCGATGGTGGAGAAATTAGCCGATGTGATCGA 488
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 524 GTCTTTAGCTTCTCATTTCCATCTCTATCCGATGGTGGAGAAATTAGCTGATGTGATCGA 583
Query 489 AAATGGAACACGAGATCAGAATTCTGATGCACTGGTGACTGAATTGAATAGCCATTTCGA 548
||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||
Sbjct 584 AAATGGAACACGAGATCAGAATTCTGACGCCCTGGTGAATGAATTGAATAGCCATTTCGA 643
Query 549 TAAGTGTCAACAGTTGTTAAATTCGATTTCAGGATCACTAGGATCTAAAACTATGACTGT 608
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 644 CAAGTGTCAACAGTTGCTGAATTCGATTTCAGGATCACTAGGATCTAAAACTATGACTGT 703
Query 609 TGATGGCCAAAAGAGAAATGTTGAAGAAAGTGAGCAATTGCTTCAACAAAGAAGGGATTT 668
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 704 TGATGGCCAAAAGAGAAATGTTGAAGAAAGTGAGCAATTGCTTCAACAGAGAAGGGATTT 763
Query 669 GATTGTGGAGTATAGGAAATCTATTGAAGAGATTGTGA-AGATGGAGCCTTAGTTTCTAA 727
|||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||| |
Sbjct 764 GATTGTGGAGTATAGGAAATCTATTGAAGAGATTGTGACA-ATGGAGCATTAGTTTCTCA 822
Query 728 GATGTTTTGATTCAGCAATTGTTTTAGCTACTTGGGACCAATAATTGTTATCAAT---C- 783
|| ||| |||||||||| ||||| |||||||| |||||||||||||||||||| |
Sbjct 823 TAT-TTT-GATTCAGCAACTGTTT-AGCTACTTAAGACCAATAATTGTTATCAATAAACC 879
Query 784 --T-T-GATTCACATAATAAGGAGAATGTGGTTTTCTTC 818
| | |||||||||||||| ||||||||||||||||||
Sbjct 880 AATCTTGATTCACATAATAAAGAGAATGTGGTTTTCTTC 918
Score = 257 bits (139), Expect = 1e-67
Identities = 232/274 (85%), Gaps = 18/274 (7%)
Strand=Plus/Plus
Query 16 GAAGGAGAAAAAATGGATCAATTCTCAGGAGGAGGAGGTAATTGGTCGATGATCCCAAAC 75
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 69 GAAGGAGAAAAAATGGATCAATTCTCAGGAGGAGGAGGTAATTGGTCGATGATCCCAAAC 128
Query 76 GTGCAGGCGCAGGGTAACTTCGGTACACCGACCAATCATGACCAGCAACTATTCCTCcag 135
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 129 GTGCAGGCGCAAGGTAACTTCGGTACACCGACGAATCATGACCAGCAACTATTCCTCCAG 188
Query 136 caacaacagtttcatcttcaacaacaacagacgcagcagcaacaacaacaatcccagc-- 193
|||||||| || || | ||||||||||| || | | ||||||||||| | || |
Sbjct 189 CAACAACAATTACAACAACAACAACAACA-AC--A--A-CAACAACAACAGTTTCATCTT 242
Query 194 ca-caacaacaagagatgca--a-caattccagcaattcca---acaacagcaacacttc 246
|| ||||||||| ||| ||| | ||| || |||||||| |||||| |||||
Sbjct 243 CAACAACAACAACAGACGCAGCAGCAACAACAACAATTCCAGCCACAACAACAACAAGAG 302
Query 247 attcaacaa---cagcaattccaacaacaacaac 277
|| |||||| ||||||||||||||||| ||||
Sbjct 303 ATGCAACAATATCAGCAATTCCAACAACAGCAAC 336
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39835678571
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5