BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474563
Length=2419
Score E
Sequences producing significant alignments: (Bits) Value
AT1G55090.1 | Symbols: | carbon-nitrogen hydrolase family prot... 3657 0.0
> AT1G55090.1 | Symbols: | carbon-nitrogen hydrolase family protein
| chr1:20554352-20558529 FORWARD LENGTH=2762
Length=2762
Score = 3657 bits (1980), Expect = 0.0
Identities = 2190/2291 (96%), Gaps = 15/2291 (1%)
Strand=Plus/Plus
Query 138 ttttCAATTTTCACGATCTCTGAGTTTCACGACTTTGATTCTTCTGGGTTCTTCT-CACA 196
|||||||||||||||||||| || ||||||||||||||| | | ||| ||||| | ||||
Sbjct 173 TTTTCAATTTTCACGATCTCCGAATTTCACGACTTTGATAC-T-TGGTTTCTT-TGCACA 229
Query 197 TTCA--CGACGAAGATGAGGCTGTTGAAGGTCGCTACGTGTAACTTGAACCAATGGGCCA 254
|||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 230 TTCACGCGACGAAGATGAGGCTGTTGAAGGTTGCTACGTGTAACTTGAACCAATGGGCCA 289
Query 255 TGGAATTCGAGAGCAACATGAAGAATATCAAGACTTCCATCGCTGAGGCAAAAGCCGCCG 314
|||| |||||||||||||||||||| |||||| |||| |||||||||||||| || || |
Sbjct 290 TGGATTTCGAGAGCAACATGAAGAACATCAAGGCTTCGATCGCTGAGGCAAAGGCTGCTG 349
Query 315 GTGCTGTCATCAGGCTTGGACCTGAGCTCGAGGTCACTGGCTATGGCTGCGAGGATCACT 374
||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 350 GTGCTGTTATCAGGCTTGGACCCGAGCTCGAGGTCACTGGCTATGGTTGCGAGGATCACT 409
Query 375 TCTTGGAGCTCGACACCGTCACTCATTCGTGGGAGTGTTTGAAGGAATTGCTGGTTGGTG 434
||||||| |||||||| ||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 410 TCTTGGAACTCGACACTGTCACTCATGCGTGGGAGTGTTTGAAGGAATTGCTGCTTGGTG 469
Query 435 ATTGGACGGATGGA-ATATTATGCAGCATAGGAATGCCTGTTATTAAAGGAGCTGAGCGG 493
||||||||||| || || || |||||||||||||||||||| ||||||||||| |||||
Sbjct 470 ATTGGACGGAT-GATATTTTGTGCAGCATAGGAATGCCTGTGATTAAAGGAGCAGAGCGT 528
Query 494 TATAATTGTCAGGTTCTCTGTATGAACAGAAGAATCATCATGATTCGACCGAAAATGTGG 553
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 529 TATAACTGCCAGGTTCTCTGTATGAACAGAAGAATCATCATGATTCGACCGAAAATGTGG 588
Query 554 CTTGCAAACGATGGAAACTATAGGGAGCTACGGTGGTTCACGGCTTGGAAGCAGAGAGAA 613
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 589 CTCGCAAACGATGGAAACTATAGGGAGCTACGGTGGTTCACAGCTTGGAAGCAGAGAGAA 648
Query 614 AAGCTAGAGGACTTTCAGCTCCCAATTGAAATTTCAGAGGCTTTGGATCAGAAATCAGTC 673
|||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 649 GAGCTAGAGGAATTTCAGCTCCCCATTGAAATTTCAGAGGCTTTGGAGCAGAAATCAGTC 708
Query 674 CCTTTTGGTTATGGTTACATCCAGTTTATCGACACGGCTGTTGCAGCTGAAGTCTGTGAG 733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 709 CCTTTTGGTTATGGTTACATCCAGTTTATCGACACGGCTGTTGCAGCTGAAGTCTGTGAG 768
Query 734 GAACTTTTTAGTCCACTTCCTCCTCATGCCGAGCTCGCATTGAATGGGGTTGAAGTATTT 793
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 769 GAACTGTTTAGTCCACTTCCTCCTCATGCCGAGCTCGCATTGAATGGTGTTGAAGTATTT 828
Query 794 ATGAATGCAAGTGGGAGTCATCACCAACTTAGGAAACTAGATATTCGTCTGAATGCTTTC 853
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 829 ATGAATGCAAGTGGGAGTCATCACCAACTTAGGAAACTAGATATTCGTCTGAATGCTTTT 888
Query 854 ATGGGGGCTACTCATGCTCGTGGTGGGGTGTATATGTACAGTAATCAACAGGGATGTGAT 913
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 889 ATGGGGGCTACTCATGCTCGTGGTGGGGTGTATATGTACAGTAATCAACAAGGATGCGAT 948
Query 914 GGTAGCCGCTTATATTACGATGGATGTGCATGCATTGTTGTAAACGGTG-ATGTTGTCGC 972
|||||||||||||| ||||||||||||||||| |||||||||||||| | ||||||| ||
Sbjct 949 GGTAGCCGCTTATACTACGATGGATGTGCATGTATTGTTGTAAACGG-GAATGTTGTTGC 1007
Query 973 TCAAGGCTCACAATTCTCATTGAGGGACGTTGAGGTCATCATTTCCCAAATAGATCTTGA 1032
|||||||||||||||||| ||||| |||||||||||||||||||| ||| | ||||||||
Sbjct 1008 TCAAGGCTCACAATTCTCGTTGAGAGACGTTGAGGTCATCATTTCACAAGTGGATCTTGA 1067
Query 1033 TGCGGTTGCTAGTCTTCGTGGATCTATAAGTAGCTTTCAGGAACAAGCAAGCTGCAAGGT 1092
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1068 TGCGGTTGCTAGCCTTCGTGGATCTATAAGTAGCTTTCAGGAACAAGCAAGCTGCAAGGT 1127
Query 1093 TAAAGTGTCTTCAGTAGCCGTACCATGTAGGCTAACACAATCCTTCAACCTGAAAATGAC 1152
|||||| ||||||||||| || || ||||| || ||||| ||||||||||||||||||||
Sbjct 1128 TAAAGTATCTTCAGTAGCTGTGCCCTGTAGACTTACACAGTCCTTCAACCTGAAAATGAC 1187
Query 1153 ACTAAGCAGTCCGAAGAAGATCATTTACCACTCTCCACAAGAAGAAATAGCCTTTGGTCC 1212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1188 ACTAAGCAGTCCGAAGAAGATCATTTACCACTCTCCACAAGAAGAAATAGCCTTTGGTCC 1247
Query 1213 CGCTTGCTGGATGTGGGACTATTTGAGAAGAAGTGGTGCTTCAGGATTTCTGCTTCCTCT 1272
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 1248 CGCTTGCTGGATGTGGGACTATTTGAGAAGAAGTGGCGCTTCAGGATTTTTGCTTCCTCT 1307
Query 1273 TTCTGGCGGAGCAGACAGCTCCTCCGTGGCAGCTATTGTTGGCTGCATGTGCCAACTTGT 1332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1308 TTCTGGCGGAGCAGACAGCTCCTCCGTGGCAGCTATTGTTGGCTGCATGTGCCAACTTGT 1367
Query 1333 TGTTAAAGAGATTGCAAAGGGAGATGAGCAAGTAAAAGCTGATGC-AAGCCGAATTGGGA 1391
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1368 TGTTAAAGAGATTGCAAAGGGAGATGAGCAAGTAAAAGCTGATGCGAA-CCGAATTGGGA 1426
Query 1392 ATTATGCTAATGGACAGTTTCCTACTGATAGCAAAGAGTTTGCCAAACGAATATTTTACA 1451
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1427 ATTATGCTAATGGGCAGTTTCCTACTGATAGCAAAGAGTTTGCCAAACGAATATTTTACA 1486
Query 1452 CTGTCTTTATGGGTTCTGAAAACAGTTCTGAGGAGACAAAAAGGCGTGCAAAGCAGCTGG 1511
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1487 CTGTCTTTATGGGTTCTGAAAACAGTTCTGAGGAGACAAAAAGGCGTTCAAAGCAGCTGG 1546
Query 1512 CAGATGAGATCGGTGCTTGGCATCTTGATGTTTGCATAGATGGTGTTGTCTCTGCGGTTC 1571
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1547 CAGACGAGATTGGTGCTTGGCATCTTGATGTTTGCATAGATGGTGTTGTCTCTGCAGTTT 1606
Query 1572 TATCTTTATTTCAAACGGTTACAGGGAAGCGACCTCGGTATAAGGTTGATGGAGGATCAA 1631
|||| ||||||||||| |||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1607 TATCATTATTTCAAACAGTTACAGGCAAGCGACCAAGGTATAAGGTTGATGGAGGATCAA 1666
Query 1632 ACGCTGAGAACCTTGGGTTGCAGAACATTCAAGCCCGGATGAGAATGGTTTTAGCATTTA 1691
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1667 ATGCTGAGAACCTTGGGTTGCAGAACATTCAAGCCCGGATGAGAATGGTGTTAGCATTTA 1726
Query 1692 TGTTAGCGTCTCTCTTGCCTTGGGTTCATAGCAAACCAGGCTTTTACCTTGTTCTAGGCA 1751
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1727 TGTTAGCGTCTCTCTTGCCTTGGGTTCATAGCAAACCAGGCTTTTACCTTGTTCTAGGCA 1786
Query 1752 GCTCCAACGTCGATGAAGGACTTCGTGGTTACCTGACAAAGTATGATTGCAGCTCAGCAG 1811
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1787 GCTCCAACGTTGATGAAGGACTTCGTGGTTACCTGACAAAGTATGATTGCAGCTCAGCAG 1846
Query 1812 ACATAAATCCCATAGGAAGTATCAGTAAAATGGATTTGAGGTTGTTCTTAAAATGGGCTG 1871
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1847 ACATAAATCCTATAGGAAGTATCAGTAAAATGGATTTGAGGTTGTTCTTAAAATGGGCTG 1906
Query 1872 CAACGAATCTCGGATATCCATCCTTGGCAGAGATAGAAGCTGCTCCACCAACAGCTGAGC 1931
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1907 CAACGAATCTCGGATATCCATCCTTGGCAGAGATAGAAGCTGCTCCACCAACAGCTGAGC 1966
Query 1932 TTGAGCCCATTCGTTCTGACTATTCTCAGCTAGATGAAGTCGACATGGGAATGACATATG 1991
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1967 TTGAGCCCATTCGTTCTGACTATTCTCAGCTCGATGAAGTCGACATGGGAATGACATATG 2026
Query 1992 AAGAGCTTTCAGTCTATGGAAGGATGAGGAAGATATTCCGTTGTGGACCAGTTTCTATGT 2051
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2027 AAGAGCTTTCAGTCTATGGAAGGATGAGGAAGATATTCCGTTGTGGACCAGTATCTATGT 2086
Query 2052 TCAAGAATCTATGTTACAAGTGGGGAACAAAGCTAAGCCCAGCAGAAGTAGCTGAGAAAG 2111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2087 TCAAGAATCTATGTTACAAGTGGGGAACAAAGCTAAGCCCAGCAGAAGTAGCTGAGAAAG 2146
Query 2112 TGAAGTATTTCTTCAAATATTATTCGATCAATCGACACAAAATGACTGTCCTCACACCGT 2171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147 TGAAGTATTTCTTCAAATATTATTCGATCAATCGACACAAAATGACTGTCCTCACACCGT 2206
Query 2172 CTTATCACGCTGAGAGTTACTCTCCAGAGGACAACAGATTCGATCTGAGGCAGTTTCTGT 2231
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2207 CTTATCACGCTGAGAGTTACTCCCCAGAGGACAACAGATTCGATCTGAGGCAGTTTCTGT 2266
Query 2232 ACAACAGCAAGTGGCCATACCAGTTTAAGAAGATTGACGAGATGGTAGACGGCTTAAATG 2291
||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||
Sbjct 2267 ACAACAGCAAGTGGCCATACCAGTTTAAGAAGATTGACGAGATTGTTGACAGCTTAAATG 2326
Query 2292 GCGACTCAGTTGCTTTCCCGGAGGAAGAAGCAAACTCCAACAGAGAAATTGGAGTTGTAG 2351
| |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 2327 GTGACTCAGTTGCTTTCCCGGAAGAAGAAGCAAACTCCAACAAAGAAATTGGAGTTGTAG 2386
Query 2352 CAGCAAACTCTGAAGACCCAAGCGCGGGTCTGTGATGACCATCATCCAT---CCCTCTTT 2408
|||||||||| | ||||||||| |||||||| |||||| |||||||| | |||||| |
Sbjct 2387 CAGCAAACTCCGGAGACCCAAGTGCGGGTCTCTGATGAACATCATCCCTAAACCCTCTCT 2446
Query 2409 GTTTCAACCCA 2419
|||||||||||
Sbjct 2447 GTTTCAACCCA 2457
Score = 106 bits (57), Expect = 1e-21
Identities = 86/99 (87%), Gaps = 5/99 (5%)
Strand=Plus/Plus
Query 1 AATCGTAAAACGAAGTCGTTTCACG-CTCAA--TC-TCTTATTATTGTTCCTCTCAAACC 56
|||||||||||| ||||||||| | |||| || |||| || || |||||||||||||
Sbjct 13 AATCGTAAAACGCCGTCGTTTCA-GTATCAATCTCTTCTTCTTCTTCTTCCTCTCAAACC 71
Query 57 GAATGTTCTTCTTGGTCGGTCAGAATCTGTTCTGCCCGA 95
|||||||||||||||||||||| |||||||||||| |||
Sbjct 72 GAATGTTCTTCTTGGTCGGTCACAATCTGTTCTGCACGA 110
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 120129904185
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5