BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474570
Length=1761
Score E
Sequences producing significant alignments: (Bits) Value
AT1G55150.1 | Symbols: | DEA(D/H)-box RNA helicase family prot... 2700 0.0
> AT1G55150.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:20574480-20577320 FORWARD LENGTH=1839
Length=1839
Score = 2700 bits (1462), Expect = 0.0
Identities = 1639/1722 (95%), Gaps = 21/1722 (1%)
Strand=Plus/Plus
Query 1 CTCTCACCTTTCGTCGTCCCAATTGGTAAAACCCTAACGACTAGATTTC---A---G--- 51
|||||||||||||||||||||||| |||||||||||||||||||||||| | |
Sbjct 34 CTCTCACCTTTCGTCGTCCCAATTTGTAAAACCCTAACGACTAGATTTCAGTACCTGCAA 93
Query 52 -------TTCTCAACTTTCCGATCATATTTCTCAATCGGAGAAACTGAGTCGACGAACAT 104
||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 94 CTCCTTTTTCTCAACTTTCCGATCATATTTCTCAATCGGAGAAACTGATTCGACGAACAT 153
Query 105 CATGAGTCGTTACGATAGCCGGACCGGCGACTCCACCTCGTTCCGTGACCGTCGAAGTGA 164
||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 154 CATGAGTCGCTACGATAGCCGGACCGGCGATTCCACCTCGTACCGTGACCGTCGAAGTGA 213
Query 165 CTCAGGGTTTGGTGGGACTTCAGCATATGGAAGCTCAGGTAGTCATACATCTAGCAAAAA 224
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 214 CTCAGGGTTTGGTGGGACTTCATCATATGGAAGCTCAGGTAGTCATACATCTAGCAAAAA 273
Query 225 GGATAATGATGGCAATGAATCTCCAAGGAAGCTAGATTTGGATGGTTTGACTCCTTTTGA 284
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 274 GGATAACGATGGCAATGAATCTCCAAGGAAGCTAGATTTAGATGGTTTGACTCCTTTTGA 333
Query 285 GAAGAATTTCTATGTCGAGTCACCTGCTGTAGCGGCTATGACTGACACAGAAGTGGAGGA 344
||||||||| ||||||||||| || ||||| ||||||||||| ||||||||||| |||||
Sbjct 334 GAAGAATTTTTATGTCGAGTCTCCCGCTGTGGCGGCTATGACAGACACAGAAGTAGAGGA 393
Query 345 ATATCGAAAGTTGAGGGAGATTACTGTTGAAGGCAAAGATATTCCAAAACCCGTCAAGAG 404
|||||||||| | ||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 394 ATATCGAAAGCTAAGGGAAATTACTGTTGAAGGCAAAGATATTCCAAAACCTGTCAAGAG 453
Query 405 TTTTCGTGATGTTGGCTTTCCTGATTATGTTTTGGAAGAGATTAAGAAGGCTGGTTTTAC 464
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 454 TTTTCGTGATGTTGGCTTTCCTGATTATGTTTTGGAAGAGGTTAAGAAGGCTGGTTTTAC 513
Query 465 TGAACCTACGCCTATACAATCTCAGGGGTGGCCAATGGCAATGAAGGGACGTGATCTCAT 524
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 514 TGAACCTACGCCTATACAATCTCAGGGGTGGCCAATGGCTATGAAGGGACGTGATCTTAT 573
Query 525 CGGCATTGCGGAAACTGGCTCTGGAAAGACTATTTCCTACTTACTACCTGCTATTGTACA 584
||||||||| |||||||| |||||||||||| |||| |||||||||||||||||||| ||
Sbjct 574 CGGCATTGCTGAAACTGGTTCTGGAAAGACTCTTTCTTACTTACTACCTGCTATTGTCCA 633
Query 585 TGTTAATGCCCAACCAATTTTAGCTCCTGGGGACGGCCCAATCGTCTTGGTTCTTGCTCC 644
|||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||
Sbjct 634 TGTTAATGCCCAACCAATGTTAGCTCATGGTGACGGCCCAATCGTCTTGGTTCTTGCTCC 693
Query 645 GACTCGTGAACTGGCTGTGCAGATACAGCAAGAGGCATCTAAATTTGGTTCATCGTCAAA 704
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 694 CACTCGTGAACTGGCTGTGCAGATACAGCAAGAGGCATCTAAATTTGGTTCATCCTCAAA 753
Query 705 AATTAAGAGCACTTGCATTTATGGTGGAGTTCCAAAAGGGCCCCAAGTGCGTGATCTCCA 764
|||||||| |||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 754 AATTAAGACCACTTGCATTTATGGTGGGGTTCCAAAAGGGCCTCAAGTGCGTGATCTCCA 813
Query 765 GAAAGGTGTGGAAATTGTTATAGCTACTCCTGGGAGGTTAATAGACATGATGGAGTCAAA 824
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 814 GAAAGGTGTGGAGATCGTTATAGCTACTCCTGGGAGGTTAATAGACATGATGGAGTCGAA 873
Query 825 CAACACAAACCTGCGAAGGGTTACTTATCTTGTTTTGGATGAGGCTGATCGAATGCTGGA 884
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 874 CAACACAAACCTACGAAGGGTTACTTATCTTGTTTTGGATGAGGCTGATCGAATGCTTGA 933
Query 885 TATGGGGTTTGACCCTCAGATCCGGAAAATTGTTTCACATATTCGGCCAGATCGTCAAAC 944
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 934 TATGGGGTTTGACCCTCAGATCCGGAAAATTGTTTCACATATTCGGCCAGACCGTCAAAC 993
Query 945 TTTGTACTGGAGTGCTACTTGGCCTAAGGAGGTGGAACAACTATCTAAGAAGTTTCTTTA 1004
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 994 TTTGTACTGGAGTGCCACTTGGCCTAAGGAGGTGGAACAACTATCGAAGAAGTTTCTTTA 1053
Query 1005 TAACCCATACAAAGTGATAATAGGATCTTCTGATTTAAAAGCAAACCGTGCAATCCGTCA 1064
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||
Sbjct 1054 TAACCCATACAAAGTGATAATAGGATCTTCTGATTTGAAAGCTAACCGTGCAATTCGTCA 1113
Query 1065 AATTGTTGATGTCATTTCCGAAAGCCAGAAGTATAACAAGTTGGTGAAGTTGCTTGAAGA 1124
||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||
Sbjct 1114 AATTGTTGATGTCATTTCCGAAAGCCAAAAGTATAACAAGTTGGTGAAACTGCTTGAGGA 1173
Query 1125 CATAATGGATGGAAGCAGAATTCTTGTTTTCCTAGATACAAAAAAGGGCTGTGACCAAAT 1184
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1174 CATAATGGATGGAAGCAGAATTCTTGTCTTCCTCGATACAAAAAAGGGCTGTGACCAAAT 1233
Query 1185 CACTCGTCAGCTCCGCATGGATGGTTGGCCTGCTTTGTCAATACATGGTGATAAAAGTCA 1244
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1234 CACTCGTCAGCTTCGCATGGATGGTTGGCCTGCTTTGTCAATACATGGAGATAAAAGTCA 1293
Query 1245 AGCCGAAAGAGATTGGGTTCTCTCGGAGTTTAGATCAGGCAAAAGCCCTATAATGACTGC 1304
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1294 AGCGGAAAGAGATTGGGTTCTCTCGGAGTTTAGATCAGGCAAAAGCCCTATAATGACTGC 1353
Query 1305 TACAGATGTTGCAGCTCGTGGATTAGACGTGAAAGATGTGAAGTATGTGATAAACTATGA 1364
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1354 TACAGACGTTGCAGCTCGTGGATTAGACGTGAAAGATGTGAAGTATGTGATAAACTATGA 1413
Query 1365 CTTCCCTGGATCACTGGAGGATTATGTTCACAGGATTGGACGAACAGGTAGAGCCGGAGC 1424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1414 CTTCCCTGGATCACTGGAGGATTATGTTCACAGGATTGGACGAACAGGTAGAGCCGGGGC 1473
Query 1425 TAAAGGAACAGCTTACACTTTCTTCACAGTTGCAAACGCGAGATTCGCCAAGGAACTTAG 1484
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1474 TAAAGGAACAGCTTACACTTTCTTCACAGTTGCAAATGCGAGATTCGCCAAGGAACTTAC 1533
Query 1485 CAACATACTAGAAGAAGCTGGACAGAAAGTGAGCCCCGAATTGGCTTCAATGGGTCGCAG 1544
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1534 CAACATACTACAAGAAGCTGGACAGAAAGTGAGTCCCGAATTGGCTTCAATGGGTCGCAG 1593
Query 1545 CACCGCTCCTCCTCCTCCAGGGCTTGGAGGATTCAGAGACCGTGGGAGCAGAAGAGGGTG 1604
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1594 TACCGCTCCTCCTCCTCCAGGGCTTGGAGGATTCAGAGACCGTGGGAGCAGAAGAGGGTG 1653
Query 1605 GAGCTGATCACTGATTTTGTATCTTGTTATGGCTTTAGGGCTCAGTGATTTTCTCTCTCC 1664
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1654 GAGCTGATCACTGATTTTGTATCTTGTTATGGCTTTAGGGCTCAGTGATTTTCTTTCTCC 1713
Query 1665 ATTT-TAT-TACCTT-TTTACTATTTTGTTCCTCAAACATTT 1703
|||| ||| | | || ||||||||||||||||||||||||||
Sbjct 1714 ATTTATATCT-C-TTGTTTACTATTTTGTTCCTCAAACATTT 1753
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87097945575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5