BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474572
Length=1154
Score E
Sequences producing significant alignments: (Bits) Value
AT1G55170.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1653 0.0
> AT1G55170.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G14750.1);
Has 13439 Blast hits to 8993 proteins in 828 species: Archae
- 344; Bacteria - 1469; Metazoa - 6958; Fungi - 1008; Plants
- 683; Viruses - 29; Other Eukaryotes - 2948 (source: NCBI
BLink). | chr1:20580274-20581975 FORWARD LENGTH=1219
Length=1219
Score = 1653 bits (895), Expect = 0.0
Identities = 1097/1187 (92%), Gaps = 44/1187 (4%)
Strand=Plus/Plus
Query 1 CAATTCAAGGTAGAAGACGATATCCGCTCTGTGTAGCAGAACAGAAGAAAAGGTAATTCT 60
||||||||||||||||||||||||||||| || | || |||||||||||||||||||
Sbjct 44 CAATTCAAGGTAGAAGACGATATCCGCTC--TG-A--AG--CAGAAGAAAAGGTAATTCT 96
Query 61 GAATGTCTGGAAGAAACCGGATT--C------A-CCGAGAAAGTTATCATGATCGGCGTG 111
||||||||||||||||||||||| | | |||||| || |||||||||| ||||
Sbjct 97 GAATGTCTGGAAGAAACCGGATTCACAGAGATATCCGAGACAGCTATCATGATCATCGTG 156
Query 112 AATTACCACCGGAGAGACCTTTTCTCCGAGGCCCTCCATTGTTACAACCTCCACCACCAT 171
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 157 ATTTACCTCCGGAGAGACCTTTTCTCCGAGGCCCTCCATTGTTACAACCTCCACCACCAT 216
Query 172 CTTTGTTAGAAGATC-T----T-C---A----G--AT----A--CAGGATGCTGAAATTA 210
||||||||||||||| | | | | | || | |||||||||||||| |
Sbjct 217 CTTTGTTAGAAGATCTTCAGATACAGGAGGGTGAAATCAGAAGGCAGGATGCTGAAATCA 276
Query 211 GAAGGCTTTTGAATGATAATCATAGACTAGCTGACGACCGAGTGGTTCTGGAGCGAGAAC 270
|||||||||||| |||||||||| ||||||||||||||||| ||||||||||| ||||||
Sbjct 277 GAAGGCTTTTGAGTGATAATCATGGACTAGCTGACGACCGAATGGTTCTGGAGAGAGAAC 336
Query 271 TCGGTGCTGCTAAAGAAGAGCTTCACCGAATGAATCTGATGATTTCTGATCTTCGTGCTG 330
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 337 TCGTTGCTGCTAAAGAAGAGCTTCACCGAATGAATCTGATGATTTCTGATCTTCGTGCTG 396
Query 331 AGCAAGATCTGCAGTCGAGGGAGTTTAGTGAGAAAAGGCATAAACTTGAGGGGGATGTTC 390
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 397 AGCAAGATCTGCAATTGAGGGAGTTTAGTGAGAAAAGGCATAAACTTGAGGGGGATGTTC 456
Query 391 GCGCTATGGAGTCGTATAAGAAGGAGGCGTCGCAGTTGCGTGGTGAAGTTCAGAAGCTGA 450
|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 457 GCGCTATGGAGTCGTATAAGAAGGAGGCTTCACAGTTGCGTGGTGAAGTTCAGAAGCTGG 516
Query 451 ATGAGATTAAACGTGAATTAAGTGGAAATGTTCAGATGCTTAGGAAAGATTTGGCGAAAT 510
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 517 ATGAGATTAAACGTGAATTAAGTGGAAATGTTCAGTTGCTTAGGAAAGATTTGGCTAAAT 576
Query 511 TGCAATCAGATAACAAGCAGATTCCGGGTATGAGAGCTGAGGTTAAAGACCTGCAGAAGG 570
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 577 TGCAATCAGATAACAAGCAGATTCCTGGTATGAGAGCTGAGGTTAAAGACCTGCAGAAGG 636
Query 571 AGCTTATGCATGCTAGAGATGCAATTGACTATGAAAAGAAGGAAAAGTTTGAGCTTATGG 630
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 637 AGCTTATGCATGCTAGAGATGCAATTGAATATGAGAAGAAGGAAAAGTTTGAGCTTATGG 696
Query 631 AGCAGCGGCAGACAATGGAAAAGAACATGGTTTCTATGGCCCGTGAAGTTGAAAAGCTAC 690
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 697 AGCAGCGGCAGACAATGGAAAAGAACATGGTTTCTATGGCGCGTGAAGTTGAAAAGCTAC 756
Query 691 GAGCAGAACTTGCTACTGTTGATAGTAGGCCCTGGGGTTTTGGTGGATCGTATGGGATGA 750
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 757 GCGCAGAACTTGCTACTGTTGATAGTAGGCCGTGGGGTTTTGGTGGATCGTATGGGATGA 816
Query 751 ATTACAACAATATGGATGGCACTTTCCGTGGTTCTTATGGCGAAAACGATAGTTATTTGG 810
|||||||||||||||| |||||||||||||| || |||||||||||||||| ||||||||
Sbjct 817 ATTACAACAATATGGACGGCACTTTCCGTGGCTCGTATGGCGAAAACGATACTTATTTGG 876
Query 811 GATCTTCGGAAAGGAGTCAATATTACAGCCATGGGTCTGGCTCGCAGAAGAAACCTCGTT 870
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 877 GATCTTCGGAAAGGAGTCAATATTACAGCCATGGGTCTGGCTCGCAGAAGAAACCTCGTT 936
Query 871 TGGATCGTCATTGAAATCTATAAATGATCTGTGGAAAAAGAATGAGGTGACGTCTAAATA 930
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 937 TGGATCGTCATTGAAATCTA-AAATGATCTGTGGAAAAAGAATGAGGTGACGACTAAATA 995
Query 931 GCCCACTTCGCAAAA-TCCTCTGGTTTTTTGTGGGTATGCATCTACTCTAAATCTAAATG 989
||||||||| ||| | |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 996 GCCCACTTCTCAATACTCCTCTGGTTGTTTGTGGGTATGCATCTACTCTAAATCTAAATG 1055
Query 990 TTAGTTCTTCTGCTTTCTCAATAAAGCGTAATAGTTGTGTAACTTAGATGGCtttttatt 1049
|||||||||||||||| | ||||| |||| |||||| |||||||||||||||||||| ||
Sbjct 1056 TTAGTTCTTCTGCTTTTTTAATAAGGCGTTATAGTTATGTAACTTAGATGGCTTTTT-TT 1114
Query 1050 cttt-tct-tttttAGCCAAACCTAGATGGCTAATCTATTTCCTTCTTATTTCAATAATT 1107
|||| | | ||||||||||| | ||||||||||||||||||| | | |||||||||||
Sbjct 1115 CTTTCTTTCTTTTTAGCCAAGCTTAGATGGCTAATCTATTTCGTA-TG-TTTCAATAATT 1172
Query 1108 TGACGATTTGGTTCTTCTTGCTTGCTATTAGTTGTGTCCTATTATCC 1154
|||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 1173 TGACGATTTGGTTCTTCTTGCTTGCTATTAATTGTGTTCTATTATCC 1219
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56626214760
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5