BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg474577

Length=574
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G55205.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   453    8e-127


> AT1G55205.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein 
match is: unknown protein (TAIR:AT3G13674.1); Has 30201 
Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria 
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; 
Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 
| chr1:20594559-20595268 FORWARD LENGTH=511
Length=511

 Score =  453 bits (245),  Expect = 8e-127
 Identities = 267/278 (96%), Gaps = 0/278 (0%)
 Strand=Plus/Plus

Query  1    CAATGGCGTCTTCTTCTAAAATCTGCAGATTATCATCAAAGATTCATTCTTTAACCCAGA  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  24   CAATGGCGTCTTCTTCTAAAATCTGCAGATTATCATCAAAGATTCATTCTTTAACCCAGA  83

Query  61   AGCTTAGCAAGACGAATGTTCACGCTTCCTCCTTACCCTCTCCCATTAAATCTTCATCTC  120
            |||| ||||||||||||||||||  |||||| ||||||||||||||||||||||||||||
Sbjct  84   AGCTCAGCAAGACGAATGTTCACATTTCCTCTTTACCCTCTCCCATTAAATCTTCATCTC  143

Query  121  CATCCTCAGCAACCACTCGTATCAATCAATCTTTTAGATTACCAGTGGAGCTAAGTAGCT  180
            |||||||||||||  | |||||||||||||||||||||||||| |||||||||||| |||
Sbjct  144  CATCCTCAGCAACTTCCCGTATCAATCAATCTTTTAGATTACCGGTGGAGCTAAGTTGCT  203

Query  181  GTTTATCGATGTTGCCCCTACACAGTGCTATAGCATCTGCCAGATTGATATCAAGTTTGT  240
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  204  GTTTATCGATGTTGCCACTACACAGTGCTATAGCATCTGCCAGATTGATATCAAGTTTGT  263

Query  241  CTGTTGAGTCTAAGAGCTGGGCTTTAGTTCCTCAAGGT  278
            ||||||||||||||||||||| ||||||||||||||||
Sbjct  264  CTGTTGAGTCTAAGAGCTGGGGTTTAGTTCCTCAAGGT  301



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27578546703


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5