BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg474585

Length=546
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G55265.1 | Symbols:  | Protein of unknown function, DUF538 |...   660    0.0  


> AT1G55265.1 | Symbols:  | Protein of unknown function, DUF538 
| chr1:20617313-20618005 FORWARD LENGTH=693
Length=693

 Score =  660 bits (357),  Expect = 0.0
 Identities = 472/523 (90%), Gaps = 25/523 (5%)
 Strand=Plus/Plus

Query  5    CTTCTTTGCTTACActcttctgtctctctc-tcttatctctc-t-cctc-ctcctcctcc  60
            ||||||||||| |||||||||  || |||| || | |||||| |  ||| ||||||||||
Sbjct  21   CTTCTTTGCTTGCACTCTTCT-CCTGTCTCTTCCTCTCTCTCTTATCTCTCTCCTCCTCC  79

Query  61   ctaaatctccgccgtccaatcttctctcaatcc-A-G----CG----------GTCTC--  102
            ||||||||||||||||| ||||||||||||||| | |    ||           ||||  
Sbjct  80   CTAAATCTCCGCCGTCCGATCTTCTCTCAATCCAACGACCTCGATCTCTTCTCTTCTCTA  139

Query  103  GATCTCGACCGTCCATCTCTGGCCGCCGATGACATCCACGATCTTCTCCCACGCTACGGA  162
             ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  140  AATCTCGACCGTCCATCTCTCGCCGCCGATGACATCCACGATCTTCTCCCACGCTACGGA  199

Query  163  TTCCCGAAAGGTCTTCTTCCCAATAACGTCAAATCGTACACTCTCTCCGACGACGGCGAT  222
            ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct  200  TTCCCGAAAGGTCTTCTTCCCAACAACGTCAAATCGTACACTATCTCCGACGACGGCGAT  259

Query  223  TTCACCGTTGACCTAATTTCTAATTGCTACGTCAAGTTCTCCGATCAACTCGTTTTCTAC  282
            |||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||
Sbjct  260  TTCACCGTTGACCTGATTTCCAGTTGCTACGTCAAGTTCTCCGATCAACTCGTTTTCTAC  319

Query  283  GGCAAGAATATTGCCGGAAAACTCAGTTACGGATCTGTTATAGACGTCCATGGAATCCAA  342
            ||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct  320  GGCAAGAATATCGCCGGAAAACTCAGTTACGGATCTGTTAAAGACGTCCGTGGAATCCAA  379

Query  343  GCTAAAGAGGCTTTCCTTTGGTTACCAATCACCGCCATGGAATCTGATCCAAGCTCTGCC  402
            |||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct  380  GCTAAAGAAGCTTTCCTTTGGCTACCAATCACCGCCATGGAATCGGATCCAAGCTCTGCC  439

Query  403  ACGGTTGTGTTCTCCGTTGGATTCGTATCCAAGACTTTACCGG-TGTCCATGTTCGAAAA  461
            ||||||||||||||||| ||||| || |||||||||||||| | | ||||||||||||||
Sbjct  440  ACGGTTGTGTTCTCCGTCGGATTTGTGTCCAAGACTTTACCTGCT-TCCATGTTCGAAAA  498

Query  462  TGTTCCTTCTTGCTCAAGAAACCTAAATCTTCAAGATTCTTGA  504
            |||||||||||||||||||||||||||||||||||| ||||||
Sbjct  499  TGTTCCTTCTTGCTCAAGAAACCTAAATCTTCAAGACTCTTGA  541



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26171990587


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5