BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474587
Length=842
Score E
Sequences producing significant alignments: (Bits) Value
AT1G55300.2 | Symbols: TAF7 | TBP-associated factor 7 | chr1:20... 739 0.0
> AT1G55300.2 | Symbols: TAF7 | TBP-associated factor 7 | chr1:20628023-20629692
REVERSE LENGTH=1053
Length=1053
Score = 739 bits (400), Expect = 0.0
Identities = 453/479 (95%), Gaps = 1/479 (0%)
Strand=Plus/Plus
Query 61 TTACGACAGAAGAATTCAAGTCAAGCCGGTGATACCTTTAATGGAAGAACAGTTCATACT 120
||| || ||||||||||||||||||| | || || || |||||||||||||||||||||
Sbjct 164 TTAAGA-AGAAGAATTCAAGTCAAGCTGTTGGTATCTACAATGGAAGAACAGTTCATACT 222
Query 121 TAGGGTTCCACCGTCTGTTTCAGAACGAATTGATCGGCTTTTGAGCGACGAGGCTTCTAC 180
|||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||
Sbjct 223 TAGGGTTCCACCGTCTGTTTCAGAACGAATTGATCGGCTTTTAAGCGAGGATGCTTCTAC 282
Query 181 TTCCGACGAAATCCCTTTGGATTTGTGTTTCTCAGAGGACGGGAGAAACGGGACGTTTAT 240
|||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||
Sbjct 283 TTCCGACGAAATCCCTTTGGATTTGTTTTTTTCAGAGGATGGGAGAAACGGGACGTTTAT 342
Query 241 GATTGGAAACGACGAGTTCCCGGCTTCTCTGCTTGATCTTCCTGCTGTTGTTGAGTCTTG 300
||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 343 GATTGGAAACGACGAGTTCCCGGCTTCTCTGCTTGATCTCCCTGCAGTTGTTGAGTCTTT 402
Query 301 GAAAACTTATGATGATTGTGCATTGGTCAAAACTGCTGATATTGGGCAGATGATTATGGT 360
||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 403 TAAAACTTATGATGATTGTGCATTAGTCAAAACTGCTGATATTGGGCAGATGATCATGGT 462
Query 361 TAGGGAGCCGGGTGATCCCGCGCCTAATACAGTTGAATACAGACATGGTTTAACTCCTCC 420
||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 463 TAGGGAGCCTGGTGATCCTGCGCCTAATACAGTTGAATACAGACATGGTCTAACTCCTCC 522
Query 421 AATGAAGGATGCTCGAAAGAGAAGATTTCGTCGAGAGCCTGACCTCAATCCGGAGCTTGT 480
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 523 AATGAAGGATGCTCGAAAGAGGAGATTTCGTCGAGAGCCTGACCTTAATCCGGAGCTTGT 582
Query 481 ACAGCGGGTTGAGAGAGACTTGTTGAATATCTTGAGTGGCGGAACGGTAGAAAATGTAA 539
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 583 ACAGCGGGTTGAGAGAGACTTGTTGAATATATTGAGTGGCGGAACGGTAGAAAATGTAA 641
Score = 411 bits (222), Expect = 7e-114
Identities = 284/313 (91%), Gaps = 7/313 (2%)
Strand=Plus/Plus
Query 536 GTAAATGAGCAAGAGGAAGCAACCGCGAACGAGAATGCTAGTAATGAAAATAGGAAAG-- 593
||| |||||||||||||| || | ||||||||||||||||||||| || || |||||
Sbjct 730 GTACATGAGCAAGAGGAACCAGCTACGAACGAGAATGCTAGTAATGCAAGTAAGAAAGTA 789
Query 594 TC-TCGTCTTCACCTACACCTGCTGAAAAGCCTGAAGCTCCTGAGACAGGCACTAGTAAT 652
|| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 790 TCTTCTTCTTCACCTACACCTGTTGAAAAGCCTGAAGCTCCTGAGACAGGCACTAGTAAT 849
Query 653 CCAGCAGGAGTTGAGCCAGAGAGAAGTGAATCAGAAGATTCTGATGATTCAATGTGAGTT 712
||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 850 CCAACAGGAGTTGAACCGGAGAGAAGTGAATCAGAAGATTCTGATGATTCAATGTGAGTT 909
Query 713 TATTACG-TA-AA-GAGATTTTTCTTACAAAAACTTACGAGTTTGGGCAAGTCCTGTCTT 769
||||| || || |||||||||||||| ||| |||| ||||||| ||||||||||||||
Sbjct 910 TATTATTATATAAAGAGATTTTTCTTACGAAAGCTTA-GAGTTTGCGCAAGTCCTGTCTT 968
Query 770 AGAAAATCATGGATAATTATGTCTCCATGGTTTGATGATGTCTTCTTCAACCTTTTTCAA 829
||||||||||||||||||||||| ||||| |||||||||||||| ||| |||||||||||
Sbjct 969 AGAAAATCATGGATAATTATGTCCCCATGATTTGATGATGTCTTGTTCGACCTTTTTCAA 1028
Query 830 TGGAAAAGTTGTT 842
|||||||||||||
Sbjct 1029 TGGAAAAGTTGTT 1041
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41041298099
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5