BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg474587 Length=842 Score E Sequences producing significant alignments: (Bits) Value AT1G55300.2 | Symbols: TAF7 | TBP-associated factor 7 | chr1:20... 739 0.0 > AT1G55300.2 | Symbols: TAF7 | TBP-associated factor 7 | chr1:20628023-20629692 REVERSE LENGTH=1053 Length=1053 Score = 739 bits (400), Expect = 0.0 Identities = 453/479 (95%), Gaps = 1/479 (0%) Strand=Plus/Plus Query 61 TTACGACAGAAGAATTCAAGTCAAGCCGGTGATACCTTTAATGGAAGAACAGTTCATACT 120 ||| || ||||||||||||||||||| | || || || ||||||||||||||||||||| Sbjct 164 TTAAGA-AGAAGAATTCAAGTCAAGCTGTTGGTATCTACAATGGAAGAACAGTTCATACT 222 Query 121 TAGGGTTCCACCGTCTGTTTCAGAACGAATTGATCGGCTTTTGAGCGACGAGGCTTCTAC 180 |||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||| Sbjct 223 TAGGGTTCCACCGTCTGTTTCAGAACGAATTGATCGGCTTTTAAGCGAGGATGCTTCTAC 282 Query 181 TTCCGACGAAATCCCTTTGGATTTGTGTTTCTCAGAGGACGGGAGAAACGGGACGTTTAT 240 |||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||| Sbjct 283 TTCCGACGAAATCCCTTTGGATTTGTTTTTTTCAGAGGATGGGAGAAACGGGACGTTTAT 342 Query 241 GATTGGAAACGACGAGTTCCCGGCTTCTCTGCTTGATCTTCCTGCTGTTGTTGAGTCTTG 300 ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| Sbjct 343 GATTGGAAACGACGAGTTCCCGGCTTCTCTGCTTGATCTCCCTGCAGTTGTTGAGTCTTT 402 Query 301 GAAAACTTATGATGATTGTGCATTGGTCAAAACTGCTGATATTGGGCAGATGATTATGGT 360 ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 403 TAAAACTTATGATGATTGTGCATTAGTCAAAACTGCTGATATTGGGCAGATGATCATGGT 462 Query 361 TAGGGAGCCGGGTGATCCCGCGCCTAATACAGTTGAATACAGACATGGTTTAACTCCTCC 420 ||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||||| Sbjct 463 TAGGGAGCCTGGTGATCCTGCGCCTAATACAGTTGAATACAGACATGGTCTAACTCCTCC 522 Query 421 AATGAAGGATGCTCGAAAGAGAAGATTTCGTCGAGAGCCTGACCTCAATCCGGAGCTTGT 480 ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct 523 AATGAAGGATGCTCGAAAGAGGAGATTTCGTCGAGAGCCTGACCTTAATCCGGAGCTTGT 582 Query 481 ACAGCGGGTTGAGAGAGACTTGTTGAATATCTTGAGTGGCGGAACGGTAGAAAATGTAA 539 |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 583 ACAGCGGGTTGAGAGAGACTTGTTGAATATATTGAGTGGCGGAACGGTAGAAAATGTAA 641 Score = 411 bits (222), Expect = 7e-114 Identities = 284/313 (91%), Gaps = 7/313 (2%) Strand=Plus/Plus Query 536 GTAAATGAGCAAGAGGAAGCAACCGCGAACGAGAATGCTAGTAATGAAAATAGGAAAG-- 593 ||| |||||||||||||| || | ||||||||||||||||||||| || || ||||| Sbjct 730 GTACATGAGCAAGAGGAACCAGCTACGAACGAGAATGCTAGTAATGCAAGTAAGAAAGTA 789 Query 594 TC-TCGTCTTCACCTACACCTGCTGAAAAGCCTGAAGCTCCTGAGACAGGCACTAGTAAT 652 || || |||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 790 TCTTCTTCTTCACCTACACCTGTTGAAAAGCCTGAAGCTCCTGAGACAGGCACTAGTAAT 849 Query 653 CCAGCAGGAGTTGAGCCAGAGAGAAGTGAATCAGAAGATTCTGATGATTCAATGTGAGTT 712 ||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct 850 CCAACAGGAGTTGAACCGGAGAGAAGTGAATCAGAAGATTCTGATGATTCAATGTGAGTT 909 Query 713 TATTACG-TA-AA-GAGATTTTTCTTACAAAAACTTACGAGTTTGGGCAAGTCCTGTCTT 769 ||||| || || |||||||||||||| ||| |||| ||||||| |||||||||||||| Sbjct 910 TATTATTATATAAAGAGATTTTTCTTACGAAAGCTTA-GAGTTTGCGCAAGTCCTGTCTT 968 Query 770 AGAAAATCATGGATAATTATGTCTCCATGGTTTGATGATGTCTTCTTCAACCTTTTTCAA 829 ||||||||||||||||||||||| ||||| |||||||||||||| ||| ||||||||||| Sbjct 969 AGAAAATCATGGATAATTATGTCCCCATGATTTGATGATGTCTTGTTCGACCTTTTTCAA 1028 Query 830 TGGAAAAGTTGTT 842 ||||||||||||| Sbjct 1029 TGGAAAAGTTGTT 1041 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41041298099 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5