BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg474592 Length=1106 Score E Sequences producing significant alignments: (Bits) Value AT1G55340.1 | Symbols: | Protein of unknown function (DUF1639)... 1375 0.0 > AT1G55340.1 | Symbols: | Protein of unknown function (DUF1639) | chr1:20651831-20653648 FORWARD LENGTH=1151 Length=1151 Score = 1375 bits (744), Expect = 0.0 Identities = 855/909 (94%), Gaps = 6/909 (1%) Strand=Plus/Plus Query 200 TTCTGTCTTTGGTTTCATCAAGTTTCACTCTTGGTGATTCTTCAAGCTAAGTCGCTGAGT 259 ||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||| Sbjct 247 TTCTGTCTTTGGTTTCATCTAGTTTCACTCTTGGTGATTCTGGAAGATAAGTCGCTGAGT 306 Query 260 TTAAGTTGCAGATCTTGAGGTTAAGAGAGAG-AGGATTAGTGCTGTTTAATGGAGGAAGT 318 | |||||||||||||||||||||||||| || | | | |||| ||| |||||||||| || Sbjct 307 TAAAGTTGCAGATCTTGAGGTTAAGAGAAAGAAAG-TGAGTGTTGTGTAATGGAGGAGGT 365 Query 319 AAAGGGACAAAGAGGGAGTGGAACCACAGAGGCAGATTTTGTGTTGCAATGGGGAGAAAG 378 ||||||||||||||| |||||||||||||||||||||||||||||||||||||| || || Sbjct 366 AAAGGGACAAAGAGGAAGTGGAACCACAGAGGCAGATTTTGTGTTGCAATGGGGTGAGAG 425 Query 379 AAAAAGAGTTAGATGTATGAAAGTGAAGAAAGATCAAAGCCTTGCAAATGGCAAATCAAC 438 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 426 GAAAAGAGTTAGATGTATGAAAGTGAAGAAAGATCAAAGCCTTGCCAATGGCAAATCAAC 485 Query 439 TGATTGCTTGACTAAACGTAAACTCATTTCGCGTGCTGTCTCTTCTGAGAGAGGCTCGCC 498 |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| || Sbjct 486 TGATTGTTTGACTAAACGTAAACTCATTTCTCGTGCTGTCTCTTCTGAGAGAGGCTCACC 545 Query 499 TTCTCGACATCTTAACCGTCCAAACAAGATCACGGATTCTCTAGTCAATGTGCGGAGATC 558 ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct 546 TTCTCGACATCTTAACCGTCCTAACAAGATCACTGATTCTCTAGTCAATGTGCGGAGATC 605 Query 559 GTTTGTGGCATCGCCTGAGAAGGAAGATAGGTATTACACAACTAGGGGTTCGATGGGTAT 618 |||| |||| ||||| |||||||||||||||||||| ||||| |||||||||||||| || Sbjct 606 GTTTATGGCGTCGCCCGAGAAGGAAGATAGGTATTATACAACAAGGGGTTCGATGGGAAT 665 Query 619 AGATGAGAGTGGAAAAATTATTAAGGAACCTGTGAAAGAACCCAAGAAGCATGTGTGGCC 678 |||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||| Sbjct 666 AGATGAGAGTGGGAAAATTATTAAGGAACCTGTGAAAGAAACAAAGAAGCATGTGTGGCC 725 Query 679 AAAGTTGTTTATAACTTTGTCAAATAAAGAGAAGGAAGAAGATTTCTTGGCTATGAAAGG 738 |||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 726 AAAGTTGTATATAGCTTTGTCAAATAAAGAGAAGGAAGAAGATTTTTTGGCTATGAAAGG 785 Query 739 TTGCAAGCTTCCTCAAAGACCTAAGAAACGAGCCAAATTGGTTCAGAAGACATTGCTTCT 798 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 786 TTGCAAGCTTCCTCAAAGACCTAAGAAGCGAGCCAAATTGGTTCAGAAGACATTGCTTCT 845 Query 799 GGTGAGTCCAGGAGCTTGGTTATCAGATCTGTGCAaagagagatatgaagtaagagagaa 858 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 846 GGTGAGTCCAGGAGCTTGGTTATCAGATCTGTGCAAAGAGAGATATGAAGTAAGAGAGAA 905 Query 859 gaagacttcaaagaagagaccaagagGATTGAAGGCAATGGGGAGCATGGAAAGCGATTC 918 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 906 GAAGACTTCAAAGAAGAGACCAAGAGGATTGAAGGCAATGGGGAGCATGGAAAGCGATTC 965 Query 919 GGAGTGAAGAACCATCGAAGAAAAAGAACTTAAAAGAAATATTCAAGATTTTGGTGAGGG 978 ||||||||||||| ||||||||| ||||||||| || |||||||||||||||| ||||| Sbjct 966 GGAGTGAAGAACCGTCGAAGAAA--GAACTTAAATGAGATATTCAAGATTTTGGCGAGGG 1023 Query 979 GTAGAAAGGATGTATTTCGCTTTTTCATTACATTTTGAGATGCCTCTCTTCATTACTACA 1038 |||| |||| |||||||| ||||||| || |||||||||||||||||||||||||||||| Sbjct 1024 GTAGGAAGG-TGTATTTCACTTTTTCGTTGCATTTTGAGATGCCTCTCTTCATTACTACA 1082 Query 1039 GGTTAAAAATGAGGCACTTGTATTTTTGATG-ATGTTTTGCTTTCAAAGCTAATCTATCT 1097 |||||| ||||||||||||||||||||| | || |||||||||||||||||| |||||| Sbjct 1083 GGTTAACTATGAGGCACTTGTATTTTTGACGGATCTTTTGCTTTCAAAGCTAACCTATCT 1142 Query 1098 TCTTGATCT 1106 |||| |||| Sbjct 1143 TCTTAATCT 1151 Score = 148 bits (80), Expect = 8e-35 Identities = 110/122 (90%), Gaps = 11/122 (9%) Strand=Plus/Plus Query 1 AAAGGTGAGCGTCGCAGTAAAGACC---------GCAGTTTATATTTC-TTT-tgtgtgt 49 ||||||||||||||||||||||||| ||||||| |||||| ||| ||||||| Sbjct 1 AAAGGTGAGCGTCGCAGTAAAGACCAGAGGGTAAGCAGTTTTTATTTCTTTTGTGTGTGT 60 Query 50 gtgtgtTTAAAGAAGATAGATAAACAGTGTTTCGATCTTCTGGTCTCATCGAGATATTAA 109 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GTGTGTTTAAAGAAGATAGATAAACAGTGTTTCGATCTTCTGGTCTCATCGAGATATTAA 120 Query 110 AA 111 || Sbjct 121 AA 122 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54216588600 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5