BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474592
Length=1106
Score E
Sequences producing significant alignments: (Bits) Value
AT1G55340.1 | Symbols: | Protein of unknown function (DUF1639)... 1375 0.0
> AT1G55340.1 | Symbols: | Protein of unknown function (DUF1639)
| chr1:20651831-20653648 FORWARD LENGTH=1151
Length=1151
Score = 1375 bits (744), Expect = 0.0
Identities = 855/909 (94%), Gaps = 6/909 (1%)
Strand=Plus/Plus
Query 200 TTCTGTCTTTGGTTTCATCAAGTTTCACTCTTGGTGATTCTTCAAGCTAAGTCGCTGAGT 259
||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||
Sbjct 247 TTCTGTCTTTGGTTTCATCTAGTTTCACTCTTGGTGATTCTGGAAGATAAGTCGCTGAGT 306
Query 260 TTAAGTTGCAGATCTTGAGGTTAAGAGAGAG-AGGATTAGTGCTGTTTAATGGAGGAAGT 318
| |||||||||||||||||||||||||| || | | | |||| ||| |||||||||| ||
Sbjct 307 TAAAGTTGCAGATCTTGAGGTTAAGAGAAAGAAAG-TGAGTGTTGTGTAATGGAGGAGGT 365
Query 319 AAAGGGACAAAGAGGGAGTGGAACCACAGAGGCAGATTTTGTGTTGCAATGGGGAGAAAG 378
||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||
Sbjct 366 AAAGGGACAAAGAGGAAGTGGAACCACAGAGGCAGATTTTGTGTTGCAATGGGGTGAGAG 425
Query 379 AAAAAGAGTTAGATGTATGAAAGTGAAGAAAGATCAAAGCCTTGCAAATGGCAAATCAAC 438
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 426 GAAAAGAGTTAGATGTATGAAAGTGAAGAAAGATCAAAGCCTTGCCAATGGCAAATCAAC 485
Query 439 TGATTGCTTGACTAAACGTAAACTCATTTCGCGTGCTGTCTCTTCTGAGAGAGGCTCGCC 498
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 486 TGATTGTTTGACTAAACGTAAACTCATTTCTCGTGCTGTCTCTTCTGAGAGAGGCTCACC 545
Query 499 TTCTCGACATCTTAACCGTCCAAACAAGATCACGGATTCTCTAGTCAATGTGCGGAGATC 558
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 546 TTCTCGACATCTTAACCGTCCTAACAAGATCACTGATTCTCTAGTCAATGTGCGGAGATC 605
Query 559 GTTTGTGGCATCGCCTGAGAAGGAAGATAGGTATTACACAACTAGGGGTTCGATGGGTAT 618
|||| |||| ||||| |||||||||||||||||||| ||||| |||||||||||||| ||
Sbjct 606 GTTTATGGCGTCGCCCGAGAAGGAAGATAGGTATTATACAACAAGGGGTTCGATGGGAAT 665
Query 619 AGATGAGAGTGGAAAAATTATTAAGGAACCTGTGAAAGAACCCAAGAAGCATGTGTGGCC 678
|||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 666 AGATGAGAGTGGGAAAATTATTAAGGAACCTGTGAAAGAAACAAAGAAGCATGTGTGGCC 725
Query 679 AAAGTTGTTTATAACTTTGTCAAATAAAGAGAAGGAAGAAGATTTCTTGGCTATGAAAGG 738
|||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 726 AAAGTTGTATATAGCTTTGTCAAATAAAGAGAAGGAAGAAGATTTTTTGGCTATGAAAGG 785
Query 739 TTGCAAGCTTCCTCAAAGACCTAAGAAACGAGCCAAATTGGTTCAGAAGACATTGCTTCT 798
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 786 TTGCAAGCTTCCTCAAAGACCTAAGAAGCGAGCCAAATTGGTTCAGAAGACATTGCTTCT 845
Query 799 GGTGAGTCCAGGAGCTTGGTTATCAGATCTGTGCAaagagagatatgaagtaagagagaa 858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 846 GGTGAGTCCAGGAGCTTGGTTATCAGATCTGTGCAAAGAGAGATATGAAGTAAGAGAGAA 905
Query 859 gaagacttcaaagaagagaccaagagGATTGAAGGCAATGGGGAGCATGGAAAGCGATTC 918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 906 GAAGACTTCAAAGAAGAGACCAAGAGGATTGAAGGCAATGGGGAGCATGGAAAGCGATTC 965
Query 919 GGAGTGAAGAACCATCGAAGAAAAAGAACTTAAAAGAAATATTCAAGATTTTGGTGAGGG 978
||||||||||||| ||||||||| ||||||||| || |||||||||||||||| |||||
Sbjct 966 GGAGTGAAGAACCGTCGAAGAAA--GAACTTAAATGAGATATTCAAGATTTTGGCGAGGG 1023
Query 979 GTAGAAAGGATGTATTTCGCTTTTTCATTACATTTTGAGATGCCTCTCTTCATTACTACA 1038
|||| |||| |||||||| ||||||| || ||||||||||||||||||||||||||||||
Sbjct 1024 GTAGGAAGG-TGTATTTCACTTTTTCGTTGCATTTTGAGATGCCTCTCTTCATTACTACA 1082
Query 1039 GGTTAAAAATGAGGCACTTGTATTTTTGATG-ATGTTTTGCTTTCAAAGCTAATCTATCT 1097
|||||| ||||||||||||||||||||| | || |||||||||||||||||| ||||||
Sbjct 1083 GGTTAACTATGAGGCACTTGTATTTTTGACGGATCTTTTGCTTTCAAAGCTAACCTATCT 1142
Query 1098 TCTTGATCT 1106
|||| ||||
Sbjct 1143 TCTTAATCT 1151
Score = 148 bits (80), Expect = 8e-35
Identities = 110/122 (90%), Gaps = 11/122 (9%)
Strand=Plus/Plus
Query 1 AAAGGTGAGCGTCGCAGTAAAGACC---------GCAGTTTATATTTC-TTT-tgtgtgt 49
||||||||||||||||||||||||| ||||||| |||||| ||| |||||||
Sbjct 1 AAAGGTGAGCGTCGCAGTAAAGACCAGAGGGTAAGCAGTTTTTATTTCTTTTGTGTGTGT 60
Query 50 gtgtgtTTAAAGAAGATAGATAAACAGTGTTTCGATCTTCTGGTCTCATCGAGATATTAA 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GTGTGTTTAAAGAAGATAGATAAACAGTGTTTCGATCTTCTGGTCTCATCGAGATATTAA 120
Query 110 AA 111
||
Sbjct 121 AA 122
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54216588600
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5