BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474601
Length=1242
Score E
Sequences producing significant alignments: (Bits) Value
AT1G55460.1 | Symbols: | DNA/RNA-binding protein Kin17, conser... 1908 0.0
AT5G51795.1 | Symbols: | DNA/RNA-binding protein Kin17, conser... 516 2e-145
> AT1G55460.1 | Symbols: | DNA/RNA-binding protein Kin17, conserved
region | chr1:20707478-20709024 FORWARD LENGTH=1547
Length=1547
Score = 1908 bits (1033), Expect = 0.0
Identities = 1174/1243 (94%), Gaps = 5/1243 (0%)
Strand=Plus/Plus
Query 1 TCGATGGGTAAGAACGATTTTCTAACCCCGAAGGCAATTGCGAATCGAATCAAAGCCAAA 60
||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||
Sbjct 87 TCGATGGGTAAGAACGATTTTCTAACCCCAAAGGCGATTGCGAATCGAATTAAAGCCAAA 146
Query 61 GGACTTCAAAAGCTTCGATGGTATTGTCAGATGTGTCAGAAGCAATGCCGAGACGAGAAT 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 147 GGACTTCAAAAGCTTCGATGGTATTGTCAGATGTGTCAGAAACAATGCCGAGACGAGAAT 206
Query 121 GGATTCAAGTGTCACTGTATGAGCGAATCTCACCAGAGGCAGATGCAAGTCTTTGGTCAG 180
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 207 GGATTCAAGTGTCATTGTATGAGCGAATCTCACCAGAGGCAGATGCAAGTTTTTGGGCAG 266
Query 181 AATCCGACTCGTGTTGTTGATGGTTACTCCGAAGAGTTCGAGCAGACGTTTCTCGATCTG 240
||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 267 AATCCGACTCGTGTTGTCGATGGTTACTCTGAAGAATTCGAGCAGACGTTTCTCGATCTG 326
Query 241 ATGCGGCGGAGCCACCGCTTCTCTCGTATCGCCGCCACTGTTGTTTACAATGAGTATATC 300
||| ||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||
Sbjct 327 ATGAGGCGGAGCCACCGTTTCTCTCGTATCGCTGCCACTGTTGTCTACAATGAGTATATT 386
Query 301 AACGATAGGCATCATGTTCATATGAATTCCACGGAGTGGGCGACTTTGACTGAGTTTATC 360
|||||||| ||||||||||| |||||||| |||||||||||||| ||||| |||||||||
Sbjct 387 AACGATAGACATCATGTTCACATGAATTCGACGGAGTGGGCGACGTTGACGGAGTTTATC 446
Query 361 AAGCATCTTGGGAAAACTGGTAAGTGTAAGGTTGAAGAAACTCCTAAAGGTTGGTTTATT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 447 AAGCATCTTGGGAAAACTGGTAAGTGTAAGGTTGAAGAAACTCCTAAAGGTTGGTTTATT 506
Query 421 ACTTATATAGATAGAGATTCTGAGACTTTGTTTAAGGAGAGGTTGAAAAATAAGAGAGTT 480
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 507 ACTTATATAGATAGAGATTCTGAGACTTTGTTTAAGGAGAGGTTGAAGAATAAGAGAGTT 566
Query 481 AAGAGTGATTTAGCTGAGGAGGAGAAGCAAGAGAGGGAGATTCAGA-AGCAGATTGAGAG 539
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 567 AAGAGTGATTTAGCTGAGGAGGAGAAGCAAGAGAGGGAGATTCAGAGA-CAGATTGAGAG 625
Query 540 AGCTGCTGAGAAGTCGAATGCTGTTGGTGGTGAAGGTGAAAGCAGTGGTAAAGAAGCTGT 599
|||||||||||| | ||||| || ||||||||||||||||| ||||||||| || | ||
Sbjct 626 AGCTGCTGAGAAATTGAATGGTGGTGGTGGTGAAGGTGAAACCAGTGGTAATGATGAAGT 685
Query 600 GGAGgatgatgatgatgatgatgtgaagaagaaagatgaagaaTTGAGGTTTAAGAGTGG 659
| |||||||| ||||||||| | | ||||||||||||||| |||||||| ||||||||
Sbjct 686 TGTGGATGATGGTGATGATGA-GAG--GAAGAAAGATGAAGACTTGAGGTTGAAGAGTGG 742
Query 660 GGTTAAAGTTGGATTTGCTCTTGGTGGAGGTGTTAAACAGGTTGCTACGGGTAAAGAGAG 719
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 743 GGTCAAGGTTGGATTTGCTCTTGGTGGAGGTGTTAAACAGGTTGCTACGGGTAAAGAGAG 802
Query 720 AGGGGAAAGCTCGAAACTTGTGTTTGGGGATGAAGAGAATGAGAAGGTTGGGAGAGGGGA 779
||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||
Sbjct 803 AGGGGAAAGCTCGAAACTTTTGTTTGGGGATGAAGAGAATGACAAGGTTGAGAGAGGGGA 862
Query 780 TAAGAGGAAGAGAAGCGGGGAATCCGGGAGGAGCGAGAAGGACAGAAGATCAGCTTTGGA 839
|||||||||||||| ||||| |||||||||||||||||||| || ||||||||||||||
Sbjct 863 GAAGAGGAAGAGAAGTGGGGACTCCGGGAGGAGCGAGAAGGAGAGGAGATCAGCTTTGGA 922
Query 840 TGAGTTGATGAAGGAGGAAGAGAAGAAGAAGGAGAGGATGAATCGGAAAGACTACTGGTT 899
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 923 TGAGTTGATGAAGGAGGAAGAGAAGAAGAAGGAGAGGATGAATCGGAAAGATTACTGGTT 982
Query 900 GTTCGAGGGGATAATTGTGAAGGTAATGAGTAAGGCTTTGGCAGAGAAAGGGTATTATAA 959
|||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 983 GTTCGAAGGGATCATTGTGAAGGTGATGAGTAAGGCTTTGGCAGAGAAAGGGTATTATAA 1042
Query 960 GCAAAAGGGTGTTGTGAAGAAAGTGATTGATAAGTATGTGGGGGAGATCGAAATGCTTGA 1019
|||||| |||||||||||||||||||||||||| ||||| ||||||||| ||||||||||
Sbjct 1043 GCAAAAAGGTGTTGTGAAGAAAGTGATTGATAATTATGTTGGGGAGATCAAAATGCTTGA 1102
Query 1020 TTCTAAGCATGTGCTGAGAGTTGATCAAGTGGAGCTCGAGACTGTGCTTCCACAGATAGG 1079
|||||| |||||| |||||||||||||| |||||| ||||||||||||||||| || ||
Sbjct 1103 TTCTAAACATGTGTTGAGAGTTGATCAAAAGGAGCTAGAGACTGTGCTTCCACAAATTGG 1162
Query 1080 AGGGATAGTGAAGATAGTGAATGGGGCATATCGTGGTTCGAATGCAAAGTTGTTGGGTGT 1139
|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1163 AGGGATGGTGAAGATAGTGAATGGGGCATATCGTGGTTCGAATGCAAGGTTGTTGGGTGT 1222
Query 1140 GGATACAGAGAAGTTCTGTGCTAAAGTGCAAATCGAGAAAGGTGTCTATGATGGAAGAGT 1199
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1223 GGATACAGAGAAGTTCTGTGCTAAAGTGCAGATCGAGAAAGGTGTCTATGATGGAAGAGT 1282
Query 1200 CATCAAGTCCATTGAGTACGAGGACATATGCAAACTTGCTTAG 1242
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 1283 CATCAAGTCCATTGAGTACGAGGACATATGCAAACTTGCTTAG 1325
> AT5G51795.1 | Symbols: | DNA/RNA-binding protein Kin17, conserved
region | chr5:21043083-21044194 REVERSE LENGTH=1044
Length=1044
Score = 516 bits (279), Expect = 2e-145
Identities = 350/383 (91%), Gaps = 9/383 (2%)
Strand=Plus/Plus
Query 1 TCGATGGGTAAGAACGAT-TTTCTAACCCCGAAGGCAATTG-CGAATCGAATCAAAGCCA 58
|||||||| ||||||||| | | ||||||||||||| | || |||||||||| ||||| |
Sbjct 47 TCGATGGGCAAGAACGATATGT-TAACCCCGAAGGCGA-TGTCGAATCGAATAAAAGCGA 104
Query 59 AAGGACTTCAAAAGCTTCGATGGTATTGTCAGATGTGTCAGAAGCAATGCCGAGACGAGA 118
||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||
Sbjct 105 AAGGACTTCAAAAGCTTCGATGGTATT-TCAGATGTGTGAGAAACAATGCCGAGACGAGA 163
Query 119 ATGGATTCAAGTGTCACTGTATGAGCGAATCTCACCAGAGGCAGATGCAAGTCTTTGG-T 177
|||||||||||||||| ||||||||||||||||||||| | ||||||||||| ||||| |
Sbjct 164 ATGGATTCAAGTGTCATTGTATGAGCGAATCTCACCAGCGTCAGATGCAAGT-TTTGGGT 222
Query 178 CAGAATCCGACTCGTGTTGTTGATGGTTACTC-CGAAGAGTTCGAGCAGACGTTTCTCGA 236
||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||
Sbjct 223 CAGAATCCGACTCGTGTTGTTAATGGTTACTCTC-AAGAGTTCGAGCAGACGTTTCTCGA 281
Query 237 TCTGATGCGGCGGAGCCACCGCTTCTCTCGTATCGCCGCCACTGTTGTTTACAATGAGTA 296
||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||
Sbjct 282 TCTGATGCGGCGGAGCCACCGATTCTCTCGTGTCGCCGCCACTGTTGTCTACAATGAGTA 341
Query 297 TATCAACGATAGGCATCATGTTCATATGAATTCCACGGAGTGGGCGACTTTGACTGAGTT 356
||| |||||||| | |||||||||||||||||| || ||||||| ||||||||||||||
Sbjct 342 TATTAACGATAGACTTCATGTTCATATGAATTCGACAAAGTGGGCAACTTTGACTGAGTT 401
Query 357 TATCAAGCATCTTGGGAAAACTG 379
||| ||| |||| ||||||||||
Sbjct 402 TATAAAGTATCTAGGGAAAACTG 424
Score = 411 bits (222), Expect = 1e-113
Identities = 260/279 (93%), Gaps = 0/279 (0%)
Strand=Plus/Plus
Query 964 AAGGGTGTTGTGAAGAAAGTGATTGATAAGTATGTGGGGGAGATCGAAATGCTTGATTCT 1023
|||||||||||||||| |||||||||||||||||| ||||||||||| |||||||| |||
Sbjct 766 AAGGGTGTTGTGAAGAGAGTGATTGATAAGTATGTTGGGGAGATCGAGATGCTTGAATCT 825
Query 1024 AAGCATGTGCTGAGAGTTGATCAAGTGGAGCTCGAGACTGTGCTTCCACAGATAGGAGGG 1083
||||||||| ||||||||||||| |||||||| |||||||||||||||| |||||||||
Sbjct 826 AAGCATGTGTTGAGAGTTGATCAGGTGGAGCTAAAGACTGTGCTTCCACAAATAGGAGGG 885
Query 1084 ATAGTGAAGATAGTGAATGGGGCATATCGTGGTTCGAATGCAAAGTTGTTGGGTGTGGAT 1143
|| |||||||||||||| ||||||||||||||||||||| ||| |||||||| | |||||
Sbjct 886 ATGGTGAAGATAGTGAACGGGGCATATCGTGGTTCGAATACAAGGTTGTTGGATTTGGAT 945
Query 1144 ACAGAGAAGTTCTGTGCTAAAGTGCAAATCGAGAAAGGTGTCTATGATGGAAGAGTCATC 1203
|| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 946 ACGGAGAAGTTTTGTGCTAAAGTGCAGATCGAGAAAGGTGTCTATGATGGAAGAGTCATC 1005
Query 1204 AAGTCCATTGAGTACGAGGACATATGCAAACTTGCTTAG 1242
||||||||||||||||||||||| |||||||||||||||
Sbjct 1006 AAGTCCATTGAGTACGAGGACATTTGCAAACTTGCTTAG 1044
Score = 154 bits (83), Expect = 2e-36
Identities = 98/105 (93%), Gaps = 2/105 (2%)
Strand=Plus/Plus
Query 818 AGGACAGAAGATCAGCTTTGGATGAGTTGATGAAGGAGGAAGAGAAGAAGAAGGAGAGGA 877
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 AGGA-AG-AGATCAGCTTTGGATGAGTTGATGAAGGAGGAAGAGAAGAAGAAGGAGAGGA 724
Query 878 TGAATCGGAAAGACTACTGGTTGTTCGAGGGGATAATTGTGAAGG 922
||||| ||||||||||||||||||| || || || ||||||||||
Sbjct 725 TGAATAGGAAAGACTACTGGTTGTTTGAAGGAATCATTGTGAAGG 769
Score = 150 bits (81), Expect = 3e-35
Identities = 237/302 (78%), Gaps = 52/302 (17%)
Strand=Plus/Plus
Query 493 GCTGAGGAGGAGAAGCAAGAGAGGGAGATTCAGAAGCAGATTGAGAGAGCTGCTGAGAAG 552
||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 424 GCTGAGGAGGAGAAGCAAGAGAGGGAGATTCAGAAACAGATTGAGAGA---GCT------ 474
Query 553 TCGAATGCTGTTGGTGGTGAAGGTGAAAGCA-GTGGTAAAGAAGCTG-TGGAGgatgatg 610
|| ||| |||| |||||||| |||| | || || | | || | || ||||||
Sbjct 475 TC---TGC---TGGTTGTGAAGGT-AAAG-ACGTTGT---G--GTTGAT-GATGATGATA 520
Query 611 atgatgatgatgtgaagaagaaagatgaagaaTTGAGGTTTAAGAGTGGGGTTAAAGTTG 670
|||||||||||| |||||||||||||||||| || ||||| |||| |||| | |
Sbjct 521 ATGATGATGATGAGAAGAAGAAAGATGAAGACTTTAGGTTGAAGA---AGGTT---G--G 572
Query 671 GATTTGCTCTTGGTGGAGGTGTTAAACAGGTTGCTACGGGTAAAGAGAGAGGGGAAAGCT 730
| ||||||| | | ||| || ||| || | ||||||||||||||||||||
Sbjct 573 G-TTTGCTC-T--T---GGT-TT----AGG-TG-T-----TAAAGAGAGAGGGGAAAGCT 613
Query 731 CGAAACTTGTGTTTGGGGATGAAGAGAATGAGAAGGTTGGGAGAGGGGATAAGAGGAAGA 790
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 614 CGAAACTTGTGTTTGGGGATGAAGAGAATGACAAGGTTGAGAGAGGGGATAAGAGGAAGA 673
Query 791 GA 792
||
Sbjct 674 GA 675
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61043862720
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5