BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474606
Length=2055
Score E
Sequences producing significant alignments: (Bits) Value
AT1G55490.1 | Symbols: CPN60B, LEN1 | chaperonin 60 beta | chr1... 3225 0.0
AT3G13470.1 | Symbols: | TCP-1/cpn60 chaperonin family protein... 2109 0.0
AT5G56500.1 | Symbols: | TCP-1/cpn60 chaperonin family protein... 1232 0.0
> AT1G55490.1 | Symbols: CPN60B, LEN1 | chaperonin 60 beta | chr1:20715563-20719165
REVERSE LENGTH=2087
Length=2087
Score = 3225 bits (1746), Expect = 0.0
Identities = 1947/2041 (95%), Gaps = 25/2041 (1%)
Strand=Plus/Plus
Query 40 TTCCTTGCTTCAGCTCCCGTTTTCTTATCCGGAAAACAAAAACTTCCGGTGATAGAACCT 99
|||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||
Sbjct 16 TTCCTTGCTTCAGCTCCCCTTTTCTTATCCGGAAACCAAAAACTTCCGGTGATAAAACCT 75
Query 100 CAATCGTCA------T-C-TC-T-CT--A------CT-TC--T----TGGAAAAAATGGC 134
| |||||| | | || | || | || || | |||| ||||||||
Sbjct 76 CCTTCGTCATCTCTCTACTTCTTGCTGAATTTTGTCTGTCTTTGAAGTGGATAAAATGGC 135
Query 135 GTCAACTTTCACTGCCACGTCTTCCATTGGTTCAATGGTTGCTCCAAATGGTCACAAATC 194
|||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||
Sbjct 136 GTCAACTTTCACTGCCACATCTTCTATTGGTTCAATGGTTGCTCCGAATGGTCACAAATC 195
Query 195 TGATAAGAAGCTTATGAACAAGTTGTCTTCAAGCTCTTTTGGAAGGAGACAAAGTGTGTG 254
||||||||| ||||| | |||||||||||||||||| |||||||||||||||||||||||
Sbjct 196 TGATAAGAAACTTATCAGCAAGTTGTCTTCAAGCTCATTTGGAAGGAGACAAAGTGTGTG 255
Query 255 TCCTAGACCCAGAAGATCTGGTTCTGCAATTGTATGTGCAGCCAAGGAATTACATTTCAA 314
|||||||||||||||||| ||||||||||||| || ||||| |||||||||||||||||
Sbjct 256 TCCTAGACCCAGAAGATCCAGTTCTGCAATTGTGTGCGCAGCAAAGGAATTACATTTCAA 315
Query 315 CAAAGATGGGACTACCATAAGGAAACTTCAAGCTGGTGTCAACAAACTTGCAGACCTTGT 374
|||||||||||||||||| |||| ||||||||||||||||||||| || ||||| |||||
Sbjct 316 CAAAGATGGGACTACCATTAGGAGACTTCAAGCTGGTGTCAACAAGCTCGCAGATCTTGT 375
Query 375 TGGTGTTACACTTGGACCCAAAGGACGAAATGTTGTCCTTGAGAGCAAGTATGGATCACC 434
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 376 TGGTGTTACACTTGGACCCAAAGGACGAAATGTTGTTCTTGAGAGCAAGTATGGATCACC 435
Query 435 AAGAATTGTTAATGACGGTGTGACTGTTGCAAGAGAGGTTGAGTTGGAAGACCCGGTTGA 494
| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 436 ACGAATTGTTAATGATGGTGTGACTGTTGCAAGAGAGGTTGAGTTGGAAGACCCGGTTGA 495
Query 495 GAACATTGGTGCTAAGCTTGTGAGGCAAGCGGCTGCCAAAACCAATGACTTGGCTGGTGA 554
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 496 GAACATTGGCGCTAAGCTTGTGAGGCAAGCGGCTGCCAAAACCAATGACTTGGCTGGTGA 555
Query 555 CGGTACAACAACATCTGTTGTTCTTGCACAAGGTTTTATTGCTGAGGGTGTCAAGGTGGT 614
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 556 CGGTACAACAACATCTGTTGTTCTTGCACAAGGTTTTATCGCTGAGGGTGTCAAGGTGGT 615
Query 615 AGCTGCTGGTGCAAACCCTGTTTTGATCACCAGAGGTATTGAGAAGACAGCAAAGGCTTT 674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 616 AGCTGCTGGTGCAAACCCTGTTTTGATCACCAGAGGTATTGAGAAGACAGCAAAGGCTTT 675
Query 675 GGTTACCGAGCTCAAGAAAATGTCTAAGGAGGTGGAAGACAGTGAACTTGCAGATGTTGC 734
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 676 GGTTACCGAGCTCAAGAAAATGTCTAAGGAGGTTGAAGACAGTGAACTTGCAGATGTTGC 735
Query 735 AGCTGTTAGTGCTGGTAACAACGATGAAATTGGAAATATGATTGCTGAAGCAATGAGCAA 794
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 736 AGCTGTTAGTGCGGGTAACAACGACGAAATTGGAAATATGATTGCTGAAGCAATGAGCAA 795
Query 795 AGTGGGCAGGAAAGGTGTGGTGACCCTTGAGGAGGGTAAAAGTGCCGAGAACAACCTCTA 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 796 AGTGGGCAGGAAAGGTGTGGTGACCCTTGAGGAGGGTAAAAGTGCCGAGAACAACCTCTA 855
Query 855 CGTCGTGGAAGGAATGCAATTTGATCGTGGTTATATCTCCCCTTACTTTGTGACAGACAG 914
|||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 856 CGTCGTAGAAGGAATGCAATTTGACCGTGGTTATATCTCTCCTTACTTTGTGACAGACAG 915
Query 915 CGAGAAAATGTCTGTCGAGTTCGACAATTGCAAGTTACTTCTCGTTGATAAGAAAATTAC 974
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 916 CGAGAAAATGTCCGTCGAGTTCGACAATTGCAAGTTACTTCTCGTTGACAAGAAAATTAC 975
Query 975 CAATGCAAGAGATCTTGTTGGTGTTTTGGAGGATGCAATTAGAGGTGGATACCCAATATT 1034
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 976 CAATGCAAGGGATCTTGTTGGTGTTTTGGAGGATGCAATTAGAGGCGGATACCCAATATT 1035
Query 1035 AATAATTGCAGAAGACATTGAACAAGAAGCTTTAGCTACTCTTGTTGTAAACAAGCTTAG 1094
||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1036 AATTATTGCTGAAGACATTGAACAAGAAGCTTTAGCGACTCTTGTTGTAAACAAGCTTAG 1095
Query 1095 AGGTACACTGAAGATTGCAGCTCTCAGAGCTCCAGGATTTGGAGAGCGCAAGAGCCAATA 1154
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1096 AGGTACACTGAAGATAGCAGCTCTCAGAGCTCCAGGGTTTGGAGAGCGCAAGAGCCAATA 1155
Query 1155 CCTTGACGATATTGCCATTCTAACTGGAGCAACTGTGATCCGAGAGGAAGTTGGTCTTTC 1214
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1156 CCTTGATGATATTGCCATTCTAACTGGAGCAACTGTGATCCGTGAGGAAGTTGGTCTTTC 1215
Query 1215 ACTTGACAAAGCTGGAAAAGAGGTTCTTGGTAACGCTTCAAAGGTCGTCCTCACGAAGGA 1274
||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||
Sbjct 1216 ACTTGACAAAGCTGGAAAAGAGGTTCTTGGTAATGCTTCAAAGGTTGTCCTCACAAAGGA 1275
Query 1275 GACTTCGACCATAGTGGGTGATGGAAGCACACAGGATGCAGTGAAAAAGCGTGTTATACA 1334
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1276 GACCTCGACCATAGTGGGTGATGGAAGCACACAGGATGCAGTGAAAAAGCGTGTTACACA 1335
Query 1335 GATAAAAAATCTTATTGAGCAAGCAGAGCAAGATTATGAGAAGGAAAAACTGAATGAGAG 1394
||| |||||||||||||||||||| ||||||||||| |||||||| ||||| ||||||||
Sbjct 1336 GATTAAAAATCTTATTGAGCAAGCGGAGCAAGATTACGAGAAGGAGAAACTCAATGAGAG 1395
Query 1395 AATTGCAAAGCTCTCTGGTGGAGTTGCTGTGATTCAGGTTGGAGCACAAACTGAGACAGA 1454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1396 AATTGCAAAGCTCTCTGGTGGAGTTGCTGTGATTCAGGTTGGAGCACAAACTGAGACAGA 1455
Query 1455 ACTCAAAGAGAAGAAGTTGAGAGTTGAAGATGCTCTTAATGCTACAAAGGCCGCTGTCGA 1514
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1456 ACTCAAAGAGAAGAAGTTGAGAGTTGAAGATGCTCTTAATGCAACAAAGGCCGCTGTCGA 1515
Query 1515 GGAAGGTATTGTTGTTGGTGGTGGTTGCACTCTGCTTCGTCTTGCTTCCAAGGTTGATGC 1574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1516 GGAAGGTATTGTTGTTGGTGGTGGTTGCACTCTGCTTCGTCTTGCTTCCAAGGTTGATGC 1575
Query 1575 CATTAAAGCCACTCTTGATAATGATGAAGAAAAGGTTGGAGCGGATATCGTCAAAAGAGC 1634
|||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1576 CATTAAAGCCACGCTTGATAATGATGAAGAAAAGGTTGGAGCGGATATAGTTAAAAGAGC 1635
Query 1635 ACTGAGTTATCCCCTAAAACTGATCGCCAAGAATGCTGGTGTTAATGGAAGCGTAGTTAG 1694
||| ||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1636 ACTAAGTTACCCCCTAAAACTAATCGCCAAGAATGCTGGTGTTAATGGAAGTGTAGTTAG 1695
Query 1695 CGAGAAGGTGCTTTCCAACGATAACGTGAAATTCGGTTACAATGCTGCAACCGGCAAGTA 1754
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1696 CGAGAAGGTGCTTTCCAACGATAACGTGAAATTCGGTTACAATGCTGCAACCGGCAAGTA 1755
Query 1755 CGAGGATTTGATGGCTGCAGGAATCATCGATCCAACAAAGGTTGTGAGATGTTGCTTGGA 1814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1756 CGAGGATTTGATGGCTGCAGGAATCATCGATCCAACAAAGGTTGTGAGATGTTGCTTGGA 1815
Query 1815 GCACGCAGCTTCGGTTGCAAAGACGTTCTTGATGTCGGACTGTGTTGTTGTTGAGATCAA 1874
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1816 ACACGCAGCTTCGGTTGCAAAGACTTTCTTGATGTCGGACTGCGTTGTTGTTGAGATCAA 1875
Query 1875 GGAACCTGAACCAGTTCCCGTCGGCAACCCAATGGACAACTCAGGATATGGATACTAAGA 1934
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1876 GGAACCTGAACCAGTTCCCGTCGGCAACCCAATGGACAACTCAGGATATGGATACTAAGA 1935
Query 1935 GAAGATAGGCTAATATTGAAACGGATTACTTTAGCTTGCGAGTGTAATGATTTTGAACAA 1994
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1936 GGAGATAGGCTAATATTGAAACGGATTACTTTAGCTTGCGAGTGTAATGATTTTGAACAA 1995
Query 1995 GAGAATGTGTAATGTGAAACTGAAATTTTGAATCAATCATCATATGAATAAATTATGATT 2054
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 1996 GAGAATGTGTAATGTGAAACTGAAATTTTGAATTAATCATCATATGAATAAATCATGATT 2055
Query 2055 C 2055
|
Sbjct 2056 C 2056
> AT3G13470.1 | Symbols: | TCP-1/cpn60 chaperonin family protein
| chr3:4389256-4392801 FORWARD LENGTH=2093
Length=2093
Score = 2109 bits (1142), Expect = 0.0
Identities = 1601/1821 (88%), Gaps = 38/1821 (2%)
Strand=Plus/Plus
Query 127 AAAATGGCGTCAACTTTCACTGCCACGTCTTCCATTGGTTCAATGGTTGCTCCAAATGGT 186
|||||||| || || |||||||||||||||||| ||||||| || ||||||| |||| |
Sbjct 123 AAAATGGCATCGACATTCACTGCCACGTCTTCCCTTGGTTCGTTGCTTGCTCCCAATGCT 182
Query 187 CA-CAAATCTGATAAGAAGCTTATG-AACAAG-TTGTCTTCAAGCTCTTTTGGAAGGAGA 243
| ||| | || | ||| || || || | ||||||||||| ||||||||||||
Sbjct 183 -ATCAAGT-TG-T------CTTCTGCGACTAGCATCTCTTCAAGCTCGTTTGGAAGGAGA 233
Query 244 CA-AAGTGTGTGTCCTAGACCCAGAAGATCTGGTTCTGCAATTGTATGTGCAGCCAAGGA 302
|| || ||||| | | ||||||||| || |||| || |||||||||||||||||
Sbjct 234 CATAA-CGTGTG--C--G--TCAGAAGATCCCGTCCTGCCATAGTATGTGCAGCCAAGGA 286
Query 303 ATTACATTTCAACAAAGATGGGACTACCATAAGGAAACTTCAAG-CTGGTGTCAACAAAC 361
|| |||||||| || ||||||||||||||||||||||||| || ||||||| ||||| |
Sbjct 287 GTTGCATTTCAATAAGGATGGGACTACCATAAGGAAACTTC-AGACTGGTGTTAACAAGC 345
Query 362 TTGCAGACCTTGTTGGTGTTACACTTGGACCCAAA-GGACGAAATGTTGTCCTTGAGAGC 420
| || |||||||||||||| ||||||||||| ||| ||| |||||||||| |||||||||
Sbjct 346 TCGCGGACCTTGTTGGTGTCACACTTGGACCAAAAGGGA-GAAATGTTGTTCTTGAGAGC 404
Query 421 AAGTATGGATCACCAAGAATTGTTAATGACGGTGTGACTGTTGCAAGAGAGGTTGAGTTG 480
||||||||||| ||||||||||||||||| ||||| |||||||| || ||||| ||||||
Sbjct 405 AAGTATGGATCCCCAAGAATTGTTAATGATGGTGTCACTGTTGCGAGGGAGGTCGAGTTG 464
Query 481 GAAGACCCGGTTGAGAACATTGGTGCTAAGCTTGTGAGGCAAGCGGCTGCCAAA-ACCAA 539
|| ||||||||||||||||||||||| |||||||| |||||||| |||| |||| |||||
Sbjct 465 GAGGACCCGGTTGAGAACATTGGTGCAAAGCTTGTAAGGCAAGCAGCTG-CAAAGACCAA 523
Query 540 TGACTTGGCTGGTGACGGTACAACAACATCTGTTGTTCTTGCACAAGGTTTTATTGCTGA 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 524 TGACTTGGCTGGTGACGGTACAACAACATCTGTTGTTCTTGCACAAGGTTTTATTGCTGA 583
Query 600 GGGTGTCAAGGTGGTAGCTGCTGGTGCAAACCCTGTTTTGATCACCAGAGGTATTGAGAA 659
||||||||||||||| ||||| ||||| |||||||| |||||||| || || ||||||||
Sbjct 584 GGGTGTCAAGGTGGTGGCTGCAGGTGCGAACCCTGTATTGATCACTAGGGGGATTGAGAA 643
Query 660 GACAGCAAAGGCTTTGGTTACCGAGCTCAAGAAA-ATGTCTAAGGAGGTGGAAGACAGTG 718
||| |||||||||||||||| |||||| || | |||||||||||||| ||||||||||
Sbjct 644 GACTGCAAAGGCTTTGGTTAACGAGCTGAA-ACTTATGTCTAAGGAGGTTGAAGACAGTG 702
Query 719 AACTTGCAGATGTTGCAGCTGTTAGTGCTGGTAACAACGATGAAATTGGAAATATGATTG 778
||||||| ||||| |||||||||||||| ||||| ||| | ||| |||||| ||||||||
Sbjct 703 AACTTGCTGATGTGGCAGCTGTTAGTGCGGGTAATAACCACGAAGTTGGAAGTATGATTG 762
Query 779 CTGAAGCAATGAGCAAAGTGGGCAGGAAAGGTGTGGTGACCCTTGAGGAGGGTAAAAGTG 838
|||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||| |
Sbjct 763 CTGAAGCAATGAGCAAAGTGGGCAGGAAGGGTGTGGTGACCCTGGAGGAGGGAAAAAGCG 822
Query 839 CCGAGAACAACCTCTACGTCGTGGAAGGAATGCAATTTGATCGTGGTTATATCTCCCCTT 898
| ||||||||||| || || |||||||||||||||||||| ||||||||||||||||| |
Sbjct 823 CTGAGAACAACCTTTATGTTGTGGAAGGAATGCAATTTGACCGTGGTTATATCTCCCCAT 882
Query 899 ACTTTGTGACAGACAGCGAGAAAATGTCTGTCGAGT-TCGACAATTGCAAGTTACTTCTC 957
|||||||||||||||| |||||||||||||| |||| | |||||||||||||| |||||
Sbjct 883 ACTTTGTGACAGACAGTGAGAAAATGTCTGTTGAGTAT-GACAATTGCAAGTTGCTTCTT 941
Query 958 GTTGATAAGAAAATTACCAATGCAAGAGATCTTGTTGGTGTTTTGGAGGATGCAATTAGA 1017
||||| |||||| | ||||||||||| ||||||||||| ||| | |||||||| ||||||
Sbjct 942 GTTGACAAGAAAGTAACCAATGCAAGGGATCTTGTTGGGGTTCTAGAGGATGCGATTAGA 1001
Query 1018 GGTGGATACCCAATATTAATAATTGCAGAAGACATTGAACAAGAAGCTTTAGCTACTCTT 1077
|| ||||||||||| | |||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1002 GGCGGATACCCAATCCTCATAATTGCAGAAGATATTGAACAAGAAGCCTTAGCTACTCTT 1061
Query 1078 GTTGTAAACAAGCTTAGAGGTACACTGAAGATTGCAGCTCTCAGAGCTCCAGGATTTGGA 1137
||||| |||||||||||||| |||||||||||||||||||||| |||||| |||||||||
Sbjct 1062 GTTGTTAACAAGCTTAGAGGCACACTGAAGATTGCAGCTCTCAAAGCTCCTGGATTTGGA 1121
Query 1138 GAGCGCAAGAGCCAATACCTTGACGATATTGCCATTCTAACTGGAGCAACTGTGATCCGA 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1122 GAGCGCAAGAGCCAATACCTTGACGATATTGCCATTCTAACTGGAGCAACTGTGATCAGA 1181
Query 1198 GAGGAAGTTGGTCTTTCACTTGACAAAGCTGGAAAAGAGGTTCTTGGTAACGCTTCAAAG 1257
||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1182 GAGGAAGTTGGTCTTTCTCTTGACAAAGCTGGAAAAGAGGTTCTGGGTAACGCTTCCAAG 1241
Query 1258 GTCGTCCTCACGAAGGAGACTT-CGACCATAGTGGGTGATGGAAGCACACAGGATGCAGT 1316
|| ||||| || ||||| | | | || || ||||||||||| | |||||| || |||||
Sbjct 1242 GTTGTCCTGACAAAGGAAA-TGACAACAATTGTGGGTGATGGGACCACACAAGAAGCAGT 1300
Query 1317 GAAAAAGCGTGTTATACAGATAAAAAATCTTATTGAGCAAGCAGAGCAAGATTATGAGAA 1376
||| ||||||||| ||||||| | ||||||||||||||||| |||||||| || |||||
Sbjct 1301 GAACAAGCGTGTTGTACAGATTAGGAATCTTATTGAGCAAGCGGAGCAAGACTACGAGAA 1360
Query 1377 GGAAAAACTGAATGAGAGAATTGCAAAGCTCTCTGGTGGAGTTGCTGTGATTCAGGTTGG 1436
||||||| | |||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1361 GGAAAAATTAAATGAGAGAATTGCGAAGCTCTCTGGTGGAGTTGCTGTAATTCAGGTTGG 1420
Query 1437 AGCACAAACTGAGACAGAACTCAAAGAGAAGAAGTTGAGAGTTGAAGATGCTCTTAATGC 1496
||| |||||||||||||| |||||||| |||||| ||||||| |||||||||||||||||
Sbjct 1421 AGCTCAAACTGAGACAGAGCTCAAAGAAAAGAAGCTGAGAGTGGAAGATGCTCTTAATGC 1480
Query 1497 TACAAAGGCCGCTGTCGAGGAAGGTATTGTTGTTGGTGGTGGTTGCACTCTGCTTCGTCT 1556
||||||||| ||||| |||||||||||||| ||||||||||||||||||||||| || ||
Sbjct 1481 TACAAAGGCTGCTGTTGAGGAAGGTATTGTCGTTGGTGGTGGTTGCACTCTGCTCCGGCT 1540
Query 1557 TGCTTCCAAGGTTGATGCCATTAAAGCCACTCTTGATAATGATGAAGAAAAGGTTGGAGC 1616
||| || ||||| |||||||| || | || ||||| |||||||||||||||||||||||
Sbjct 1541 TGCATCAAAGGTCGATGCCATCAAGGATACCCTTGAAAATGATGAAGAAAAGGTTGGAGC 1600
Query 1617 GGATATCGTCAAAAGAGCACTGAGTTATCCC-CTAAAACTGATCGCCAAGAATGCTGGTG 1675
||| || || ||||||||||||||||| ||| || ||| |||| || |||||||||||||
Sbjct 1601 GGAAATTGTTAAAAGAGCACTGAGTTA-CCCTCTGAAATTGATAGCTAAGAATGCTGGTG 1659
Query 1676 TTAATGGAAGCGTAGTTAGCGAGAAGGTGCTTTCCAACGATAACGTGAAATTCGGTTACA 1735
|||||||||| || || |||||||||||||| | |||||||| |||||||| || ||||
Sbjct 1660 TTAATGGAAGTGTTGTCAGCGAGAAGGTGCTGGCTAACGATAATGTGAAATTTGGATACA 1719
Query 1736 ATGCTGCAACCGGCAAGTACGAGGATTTGATGGCTGCAGGAATCATCGATCCAACAAAGG 1795
||||||||||||||||||| || || ||||||||||||| |||||||| || |||||||
Sbjct 1720 ATGCTGCAACCGGCAAGTATGAAGACCTGATGGCTGCAGGCATCATCGACCCGACAAAGG 1779
Query 1796 TTGTGAGATGTTGCTTGGAGCACGCAGCTTCGGTTGCAAAGACGTTCTTGATGTCGGACT 1855
|||||||||||||||| || || || || || ||||||||||||||||||||||| ||||
Sbjct 1780 TTGTGAGATGTTGCTTAGAACATGCCGCCTCAGTTGCAAAGACGTTCTTGATGTCTGACT 1839
Query 1856 GTGTTGTTGTTGAGATCA-AGGAACCTGAACCAGTTCCCG-TCGGCAACCCAATGGACAA 1913
|||| |||||||||||| || | || || |||||||| | | || ||||||||||||||
Sbjct 1840 GTGTGGTTGTTGAGATCCCAG-AGCCAGAGCCAGTTCCTGCT-GGTAACCCAATGGACAA 1897
Query 1914 CTCAGGATATGGATACTAAGA 1934
|||||| ||||||||||||||
Sbjct 1898 CTCAGGTTATGGATACTAAGA 1918
> AT5G56500.1 | Symbols: | TCP-1/cpn60 chaperonin family protein
| chr5:22873791-22877396 FORWARD LENGTH=2318
Length=2318
Score = 1232 bits (667), Expect = 0.0
Identities = 1351/1678 (81%), Gaps = 59/1678 (4%)
Strand=Plus/Plus
Query 287 TATGTGCAGCCAAGGAATTACATTTCAACAAAGATGGGACTACCA-TAAGGAAACTTCAA 345
||| ||| || ||| |||| |||||||| || || |||||| | | ||| ||| ||||||
Sbjct 240 TATATGCGGCTAAGCAATTGCATTTCAATAAGGACGGGACTGCGATTAA-GAAGCTTCAA 298
Query 346 GCTGGTGTCAACAAACTTGCAGACCTT-GTTGGTGTTACACTT-GGACCCAAAGGAC-GA 402
|||||||| || |||||||| || || ||||| ||||| || || || ||||| | |
Sbjct 299 GCTGGTGTGAATAAACTTGCGGA-TTTAGTTGGGGTTAC-TTTAGGTCCTAAAGG-CAGG 355
Query 403 AATGTTGTCCTTGAGAGCAAGTATGGATCACCAAGAATTGTTAATGACGGTGTGACTGTT 462
|||||||| || |||||||| || || || || ||||| |||||||| ||||| || ||
Sbjct 356 AATGTTGTTCTAGAGAGCAAATACGGTTCCCCTAGAATCGTTAATGATGGTGTTACGGTC 415
Query 463 GCAAGAGAGGTTGAG-TTGGAAGACCCGGTTGAGAACATTGGTGCTAAGCTTGTGAGGCA 521
|| |||||||||||| || || || || ||||||||||||||||||||||| ||||| ||
Sbjct 416 GCTAGAGAGGTTGAGCTT-GAGGATCCAGTTGAGAACATTGGTGCTAAGCTAGTGAGACA 474
Query 522 AGCGGCTGCCAAAACCAATGACTTGGCTGGTGACGGTACAACAACATCTGTTGTTCTTGC 581
||| ||| |||| || |||||||| |||||||| || ||||| || ||||||||||||||
Sbjct 475 AGCTGCTTCCAAGACTAATGACTTAGCTGGTGATGGAACAACGACTTCTGTTGTTCTTGC 534
Query 582 ACAAGGTTTTATTGCTGAGGGTGTCAAGGTGGTAGCTGCTGGTGCAAACCCTGTTTTGAT 641
|||||| |||||||||| ||||| ||||||||||||||||||||||| |||||||||||
Sbjct 535 TCAAGGTCTTATTGCTGAAGGTGTAAAGGTGGTAGCTGCTGGTGCAAATCCTGTTTTGAT 594
Query 642 CACCAGAGGTATTGAGAAGA-CAGCAAAGGCT-TTGGTTACCGAGCTCAAGAAAATGTCT 699
||||||||||||||||| | || |||| ||| || || | ||| | |||||||||||
Sbjct 595 TACCAGAGGTATTGAGAAAACCACCAAA-GCTCTT-GTGGCTGAGTTGAAGAAAATGTCA 652
Query 700 AAGGAGGTGGAAGACAGTGAACTTGCAGATGTTGCAGCTGTTAGTGCTGGTAACAACGAT 759
|||||||| |||||||||||||| |||||||||||||| |||||||| || ||||| |
Sbjct 653 AAGGAGGTTGAAGACAGTGAACTAGCAGATGTTGCAGCAGTTAGTGCAGGAAACAATTAC 712
Query 760 GAAATTGGAAATATGATTGCTGAAGCAATGAGC-AAAG-TGGGCAGGAAAGGTGTGGTGA 817
||| | || ||||||||||| ||||||||| || |||| ||| | | |||||||| || |
Sbjct 713 GAAGTAGGCAATATGATTGCAGAAGCAATG-GCAAAAGTTGGTC-GTAAAGGTGTTGTCA 770
Query 818 CCCTTGAGGAGGGTAAAAGTGCCGAGAACAACCTCTACGTCGTGGAAGGAATGCAATTTG 877
| || ||||| || ||||| || ||||||| ||| ||||| || ||||||||||||||||
Sbjct 771 CTCTAGAGGAAGGCAAAAGCGCTGAGAACAGCCTTTACGTTGTTGAAGGAATGCAATTTG 830
Query 878 ATCGTGGTTATATCTCCCCTTACTTTGTGACAGACAGCGAGAAAATGTCTGTC-GAGT-T 935
|||||||||||||||| ||||||||||| || ||||| |||||||||| || | || | |
Sbjct 831 ATCGTGGTTATATCTCTCCTTACTTTGTCACCGACAGTGAGAAAATGTGTG-CAGAATAT 889
Query 936 CGACAATTGCAAGTTACTTCTCGTTGATAAGAAA-ATTACCAATGCAAGAGATCTTGTTG 994
|| || |||||||| |||| ||||| || ||| || || ||||| |||||| || ||
Sbjct 890 -GAGAACTGCAAGTTGTTTCTTGTTGACAA-AAAGATAACAAATGCTAGAGATATTATTA 947
Query 995 GTGTTTTGGAGGATGCAATTAGAGGTGGATACCCAATATTAATAATTGCAGAAGACATTG 1054
| || |||| ||||| |||| |||||||||||| | || || ||||| ||||| ||||
Sbjct 948 GCATTCTGGAAGATGCGATTAAAGGTGGATACCCGCTTTTGATCATTGCTGAAGATATTG 1007
Query 1055 AACAAGAAGCT-TTAGCTACTCTTGTTGTAAACAAGCTTAGAGGTACACTGAA-GATTGC 1112
| ||||| || ||||| ||||||||||| ||||||||| | || ||| | || | ||||
Sbjct 1008 AGCAAGA-GCCATTAGCGACTCTTGTTGTTAACAAGCTTCGTGGGACAATAAAAG-TTGC 1065
Query 1113 AGCTCTCAGAGCTCCAGGATTTGGAGAGCGCAAGAGCCAATACCTTGACGATATTGCCAT 1172
||| | | |||||| |||||||||||| | || ||||| |||||||| || |||||
Sbjct 1066 TGCTTTGAAAGCTCCTGGATTTGGAGAGAGGAAAAGCCAGTACCTTGATGACATTGCTGC 1125
Query 1173 TCTAACTGGAGCAACTGTGATCCGAGAGGAAGTTGGTCTTTCACTTG-ACAAAGCTGGAA 1231
|| || ||||| |||||||| | || |||||||| ||| || ||| | |||| ||||
Sbjct 1126 GCTTACAGGAGCTACTGTGATTAGGGAAGAAGTTGGACTT-CAGTTGGAGAAAGTTGGAC 1184
Query 1232 AAGAGGTTCTTGG-TAACGCT--TCAAAGGTCGTCCTCACGAAGGAGACTTCGACCATAG 1288
||| ||| |||| ||| ||| | |||| | || ||||| || || ||| | || ||||
Sbjct 1185 CAGAAGTT-TTGGGTAATGCTGGT-AAAG-TGGTTCTCACAAAAGATACTACAACGATAG 1241
Query 1289 TGGGTGATGGAAGCACACAGGATGCAGTGAAAAAGCGTGTT-ATACAGATAAAAAATCTT 1347
| ||||||||||| || | || | ||||| ||| | ||| | |||||| || ||||||
Sbjct 1242 TTGGTGATGGAAGTACTGAAGAAGTTGTGAAGAAGAGAGTTGA-ACAGATCAAGAATCTT 1300
Query 1348 ATTGAG-CAAGCAGAGCAAGATTATGAGAAGGAAAAACTGAATGAGAGAATTGC-AAAGC 1405
|| ||| | || || ||||| ||||| |||||||| || |||||||||||||| |||
Sbjct 1301 ATCGAGGCT-GCTGAACAAGACTATGAAAAGGAAAAGCTTAATGAGAGAATTGCTAAAT- 1358
Query 1406 TCTCTGGTGGAGTTGCTGTGATTCAGGTTGGAGCACAAACTGAGACAGAACTCAAAGAGA 1465
| || || || |||||||| ||||||||||||||||||||||||||||| || || ||||
Sbjct 1359 TATCAGGCGGTGTTGCTGTAATTCAGGTTGGAGCACAAACTGAGACAGAGCTTAAGGAGA 1418
Query 1466 AGAAGTTGAGAGTTGAAGATGCTCTTAATGCTACAAAGGCCGCTGTCGAGGAAGGTATTG 1525
|||| || |||||||||||||||||||||||||||||||| ||||| || ||||||||||
Sbjct 1419 AGAAATTAAGAGTTGAAGATGCTCTTAATGCTACAAAGGCTGCTGTGGAAGAAGGTATTG 1478
Query 1526 TTGTTGGTGGTGGTTGCACTCTGCTTCGTCTTGCTTCCAAGGTTGATGCCATTAAAGCCA 1585
||||||| || || || |||||||| | ||||| || || || || || ||||||| |
Sbjct 1479 TTGTTGGCGGAGGATGTACTCTGCTAAGACTTGCATCGAAAGTGGACGCTATTAAAGAGA 1538
Query 1586 CTCTTG-ATAATGATGAAGAAAAGGTTGGAGCGGATATCGTCAA-AAGAGCACTGAGTTA 1643
|||| | | || |||||||||||||||||||| || || || || || |||| |||| ||
Sbjct 1539 CTCTAGCA-AACGATGAAGAAAAGGTTGGAGCTGACATTGTTAAGAA-AGCATTGAGCTA 1596
Query 1644 TCCC-CTAAAACTGATCGCCAAGAATGCTGGTGTTAATGGAAGCGTAGTTAGCGAGAAGG 1702
||| || || | ||||||||||| |||||||| ||||| ||||| || || |||||||
Sbjct 1597 -CCCACTGAAGTTAATCGCCAAGAACGCTGGTGTCAATGGCAGCGTTGTCAGTGAGAAGG 1655
Query 1703 TGCTTTCCAACGATAACG-TGAA-ATTCGGTTACAATGCTGCAACCGGCAAGTACGAGGA 1760
| ||||| | || ||| | || || ||||||||||||||||| ||||| ||||| ||
Sbjct 1656 TTCTTTCTAGTGACAACCCTAAACAT--GGTTACAATGCTGCAACTGGCAAATACGAAGA 1713
Query 1761 TTTGATGGCTGCAGGAATCATCGATCCAAC-AAAGGTTGTGAGATGTTGCTTGGAGCACG 1819
| | ||||||||||||||||| |||||||| |||| |||||||||||||| | ||||| |
Sbjct 1714 TCTCATGGCTGCAGGAATCATTGATCCAACCAAAG-TTGTGAGATGTTGCCTAGAGCATG 1772
Query 1820 CAGCTTCGGTTGCAAAGACGTTCTTGATGTCGGACTGTGTTGTTGTTGAGATCAAGGAAC 1879
| | || || |||||||| ||||||||||| || ||||||||||| ||||||||||| |
Sbjct 1773 CTTCATCTGTGGCAAAGACATTCTTGATGTCTGATTGTGTTGTTGTGGAGATCAAGGAGC 1832
Query 1880 CTGAA-C--CAGTTCCCG-TCGGCAACCCAATGGACAACTCAGGATATGGATACTAAG 1933
||||| | ||| ||| | | || ||||| |||||||| ||||| || || | |||||
Sbjct 1833 CTGAATCAGCAGCTCCTGCT-GGTAACCCTATGGACAATTCAGGTTACGGCTTCTAAG 1889
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101856905805
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5