BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474610
Length=1198
Score E
Sequences producing significant alignments: (Bits) Value
AT1G55520.1 | Symbols: TBP2, ATTBP2 | TATA binding protein 2 | ... 1886 0.0
AT3G13445.1 | Symbols: TBP1, TFIID-1 | TATA binding protein 1 |... 604 5e-172
> AT1G55520.1 | Symbols: TBP2, ATTBP2 | TATA binding protein 2
| chr1:20725726-20728091 REVERSE LENGTH=1206
Length=1206
Score = 1886 bits (1021), Expect = 0.0
Identities = 1145/1202 (95%), Gaps = 19/1202 (2%)
Strand=Plus/Plus
Query 1 GATCACAAATCTCATCCCCAGAGAACCCag-agagagagagCGATATTGAAAATCAAAAC 59
||||||||||||||||||||||| | || | |||||||||||||||||||||||||
Sbjct 18 GATCACAAATCTCATCCCCAGAG-A--GAGAACCCAGAGAGCGATATTGAAAATCAAAAC 74
Query 60 TCTCTCCTTTATATATAAT-CCAATTTACAAATCTCTTTCCCTCTCTAAAAATTTCTCAT 118
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 75 TCTCTCCTTTATATATAATCCCAATTTACAAATCTCTTTCCCTCTCTAAAAATTTCTTAT 134
Query 119 CTTTGTATAAAAAGCCTACGCCTTTTTCAAATCATTCACCTTCCTTTCGCCTTTTTGGGG 178
||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||
Sbjct 135 CTTTGTATAAAAAGCCTTCTCCTTTTTCAAATCATTCACCTTCCTTTCGCCTTTTCGGGG 194
Query 179 GAATTTCTTTCAATCTTTTGGGTTTACGAAACCCTAGATTTCGAAATTCCGGATTGCTAA 238
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 195 GAATTTCTTCCAATCTGTTGGGTTTACGAAACCCTAGATTTCGAAATTCCGGATTGCTAA 254
Query 239 CTAGCGAAAGAGAATGGCTGATCAAGGAATGGAAGGGAGCCAGCCAGTTGACCTTACTAA 298
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 255 CTAGCGAAAGAGAATGGCTGATCAAGGAACGGAAGGGAGCCAGCCAGTTGACCTTACTAA 314
Query 299 GCATCCTTCAGGGATTGTTCCAACTCTTCAAAATATTGTCTCAACAGTGAACTTAGACTG 358
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 315 ACATCCTTCAGGGATTGTTCCTACTCTTCAAAATATTGTCTCAACAGTGAACTTAGACTG 374
Query 359 CAAGCTTGATCTTAAAGCCATAGCTTTGCAGGCTCGGAATGCTGAATATAACCCCAAGCG 418
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 375 CAAGCTTGATCTTAAAGCCATAGCTTTGCAAGCTAGGAATGCTGAATATAACCCCAAGCG 434
Query 419 TTTCGCTGCTGTAATCATGAGGATCAGAGAGCCAAAGACAACAGCTTTAATTTTTGCTTC 478
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 435 TTTCGCTGCTGTAATCATGAGGATCAGAGAGCCAAAGACCACAGCGTTAATTTTTGCTTC 494
Query 479 TGGGAAAATGGTGTGTACTGGAGCTAAAAGTGAACATCTTTCAAAACTTGCTGCAAGAAA 538
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 495 TGGGAAAATGGTGTGTACCGGAGCTAAAAGTGAACATCTTTCAAAGCTTGCTGCAAGAAA 554
Query 539 GTATGCTCGGATTGTTCAAAAGCTTGGCTTTCCTGCAAAGTTCAAGGATTTCAAGATTCA 598
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 555 GTATGCTCGGATTGTTCAAAAGCTTGGCTTTCCTGCAAAGTTCAAGGATTTTAAGATACA 614
Query 599 GAACATTGTAGGCTCATGTGATGTCAAATTCCCCATTAGGCTTGAAGGTCTTGCATACTC 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 615 GAACATTGTAGGCTCATGTGATGTCAAATTCCCCATTAGGCTTGAAGGTCTTGCATACTC 674
Query 659 TCATAGTGCTTTCTCAAGTTACGAGCCTGAGCTATTTCCAGGATTGATATATAGAATGAA 718
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 675 TCATAGTGCTTTCTCAAGTTACGAGCCTGAGCTATTTCCAGGATTGATATATAGGATGAA 734
Query 719 ACTGCCAAAGATTGTACTGCTTATTTTTGTGTCAGGAAAGATTGTTATAACTGGAGCCAA 778
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 735 ACTTCCAAAGATTGTACTGCTTATTTTTGTGTCAGGAAAGATTGTTATAACTGGAGCCAA 794
Query 779 GATGAGAGAAGAGACTTATACCGCATTTGAGAATATCTACCCAGTTCTTACAGAATTCAG 838
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 795 GATGAGAGAAGAGACTTATACCGCATTTGAGAATATCTACCCAGTTCTTAGAGAATTCAG 854
Query 839 GAAGGTCCAGCAATAATAGTATCAGAGCCTACAAAATTGAAAGCAAAAACCATGTTCACG 898
|||||||||||||||||||||| || ||||| | |||||| ||||||||||||||||||
Sbjct 855 GAAGGTCCAGCAATAATAGTAT-AG--CCTACCATATTGAAGGCAAAAACCATGTTCACG 911
Query 899 TTTGGATTGCCATGAACTAGAGATCTCGGGTGGTGGCAGGCGCTTGGTGAGGTTATTAT- 957
|||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||
Sbjct 912 TTTGGATTGCCATGAACTAGAGATCTCGGGTGTTGGCAGGCGCTTGGTGGGGTTAT-ATT 970
Query 958 CCTTGGACAAGAACTTGAGATGATTCAGATTCAAAACCAGAAATTGTAAATACAGAATGG 1017
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 971 CCTTGGACAAGAACTTGAAATGATTCAGATTCAAAACCAGAAATTGTAAATAGAGAATGG 1030
Query 1018 AGATGCCAAGAAATCTCTTTTCtttttttttttttGTTCTAAAAATGTCTACCAAGTA-T 1076
||||||||| ||||||||||||||||| ||||||||||||||| ||||||| |
Sbjct 1031 AGATGCCAATAAATCTCTTTTCTTTTT--------GTTCTAAAAATGTCTTCCAAGTAAT 1082
Query 1077 CTTGTTTCCTGTTCTGTTTGTTTCAGTGAGCAATACCCAATCATTAAAGAGTTACCTAGT 1136
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 1083 CTTGTTTCATGTTCTGTTTGTTTCAGTGAACAATACCCAATCATTAAAGAGTTACTTAGT 1142
Query 1137 TCTTTGCTAATTGTTCTGTAATAAGACACCAAGTCTGTTTTCCCTTTAATATACTCTTTC 1196
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1143 TCTTTGCTAACTGTTCTGTAATAAGACACCAAGTCTGTTTGCCCTTTAATATACTCTTTC 1202
Query 1197 AA 1198
||
Sbjct 1203 AA 1204
> AT3G13445.1 | Symbols: TBP1, TFIID-1 | TATA binding protein 1
| chr3:4379793-4382224 FORWARD LENGTH=1223
Length=1223
Score = 604 bits (327), Expect = 5e-172
Identities = 552/659 (84%), Gaps = 22/659 (3%)
Strand=Plus/Plus
Query 203 TACGAAACCCTAGATTTCGAAATTCCGGATTGCTAACTAGCGAAAG-AGAATGGCTGATC 261
||||||||||||||||||| ||| | || | ||| | |||| |||||| ||||||
Sbjct 223 TACGAAACCCTAGATTTCG-GATTTC---TT-C--GCTATCCAAAGAAGAATGACTGATC 275
Query 262 AAGGAATGGAAGGGAGCCAGCCAGTTGACCTTA-CTAAGCATCCTTCAGGGATTGTTCCA 320
||||| |||||||||| | |||||||| |||| | |||||||||||||||||||||||
Sbjct 276 AAGGATTGGAAGGGAGTAATCCAGTTGATCTTAGC-AAGCATCCTTCAGGGATTGTTCCT 334
Query 321 ACTCTTCAAAATATTGTCTCAACAGTGAACTTAGACTGCAAGCTTGATCTTAAAGCCATA 380
||||||||||| |||||||| || |||||||||||||||||||| |||||||||||||||
Sbjct 335 ACTCTTCAAAACATTGTCTCCACGGTGAACTTAGACTGCAAGCTAGATCTTAAAGCCATA 394
Query 381 GCTTTGCAGGCTCGGAATGCTGAATATAACCCCAAGCGTTTCGCTGCTGTAATCATGAGG 440
||||||||||||||||||||||||||||| ||||||||||| ||||| || || ||||||
Sbjct 395 GCTTTGCAGGCTCGGAATGCTGAATATAATCCCAAGCGTTTTGCTGCGGTGATAATGAGG 454
Query 441 ATCAGAGAGCCAAAGACAACAGCTTTAATTTTTGCTTCTGGGAAAATGGTGTGTACTGGA 500
|||||||| || ||||| ||||| ||||| || || || ||||||||||| |||||||||
Sbjct 455 ATCAGAGAACCGAAGACTACAGCATTAATATTCGCCTCAGGGAAAATGGTCTGTACTGGA 514
Query 501 GCTAAAAGTGAACATCTTT-CAAA-ACTTGCTGCAAGAAAGTATGCTCGGATTGTTCA-A 557
||||| || || | |||| | || | | ||||| |||||||||||| ||||||| || |
Sbjct 515 GCTAAGAGCGAGGA-CTTTTCGAAGA-TGGCTGCTAGAAAGTATGCTAGGATTGTGCAGA 572
Query 558 AAGCTTGGCTTTCC-TGCAAAGTTCAAGGATTTCAAGATTCAGAACATTGTAGGCTCATG 616
|| |||| |||| |||||| ||||||||||||||||||||||| |||||||| || ||
Sbjct 573 AA--TTGGGATTCCCTGCAAAATTCAAGGATTTCAAGATTCAGAATATTGTAGGTTCTTG 630
Query 617 TGATGTCAAATTCCCCATTAGGCTTGAAGGTCTTGCATACTCTCATAG-TGCTTTCTCAA 675
||||||||||||||| || || |||||||||||||| |||||||| | |||||||||||
Sbjct 631 TGATGTCAAATTCCCTATAAGACTTGAAGGTCTTGCTTACTCTCAC-GCTGCTTTCTCAA 689
Query 676 GTTACGAGCCTGAGCTATTTCCAGGATTGATATATAGAATGAAACTGCCAAAGATTGTAC 735
|||| ||||| ||||| || ||||| |||| ||||| |||||| | ||||| || || |
Sbjct 690 GTTATGAGCCCGAGCTCTTCCCAGGGCTGATTTATAGGATGAAAGTCCCAAAAATCGTCC 749
Query 736 TGCTTATTTTTGTGTCAGGAAAGATTGTTATAACTGGAGCCAAGATGAGAGAAGAGACTT 795
| || || ||||| || || ||||| || ||||| ||||||||||||||||| ||||| |
Sbjct 750 TTCTAATCTTTGTCTCTGGGAAGATCGTAATAACAGGAGCCAAGATGAGAGATGAGACCT 809
Query 796 ATACCGCATTTGAGAATATCTACCCAGTTCT-TACAGAATTCAGGAAGGTCCAGCAATA 853
| | || ||||||||||| ||||| || || | | |||||||| ||| | ||||||||
Sbjct 810 ACAAAGCCTTTGAGAATATATACCCCGTGCTCT-CGGAATTCAGAAAGATACAGCAATA 867
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58835038740
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5