BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474613
Length=1272
Score E
Sequences producing significant alignments: (Bits) Value
AT1G55535.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1784 0.0
> AT1G55535.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured
cell; BEST Arabidopsis thaliana protein match is: unknown
protein (TAIR:AT3G13420.1); Has 35333 Blast hits to 34131
proteins in 2444 species: Archae - 798; Bacteria - 22429;
Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other
Eukaryotes - 9610 (source: NCBI BLink). | chr1:20731646-20733997
REVERSE LENGTH=1413
Length=1413
Score = 1784 bits (966), Expect = 0.0
Identities = 1195/1299 (92%), Gaps = 42/1299 (3%)
Strand=Plus/Plus
Query 1 CGATGTGATCCCGCCAAACAAACTCTTACTCTTCCCCTCCTCACGAAATTCT---CC--C 55
|||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1 CGATGTGATCCCGCCAAACAAACTCTTACTCTTCCCCTCCTCACGAAATTCTCCACCGTC 60
Query 56 --------C--CGTCGTTCTCTTCCTCTTCTCCCTCCGTTGATCTGTGATGTGTCGCCGG 105
| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 61 GAATAATTCTTCGTCGTTCTCTTACTCTTCTCCCTCCGTTGATCTGTGATGTGTCGCCGG 120
Query 106 TAAATTTCGACAATAGAAGAAGCTTCGTGACTAATTTGTCTTTTATGAAGGGACATCGGA 165
|||||| |||| ||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 121 AAAATTTAGACATTAGAAGAAGCTTCGTGAATCATTTGTCTTTTATGAAGGGACATCGGA 180
Query 166 GTTGCCACCAGATTTATGATGCTTTGTGGTTCTTTACGAGATCGAATTCAGCCTTGGCTT 225
| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 181 GCTGCCACGAGATTTATGATGCTTTGTGGTTCTTTACGAGATCGAATTCATCCTTGGCTT 240
Query 226 CGCGATTATGTTAGGCTCCAATCTCTCGCCGTCTTCCTTATTTACGCTCAGATTGGGTGC 285
||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 241 CGCGATTATGTTAAACTCCAATCTCTCGCCGTCTTCCTTATTTATGCTCAGATTGGGTGC 300
Query 286 GCATTAATCGGATCATTAGGAGCATTATACAATGGAGTTTTGTTGATAAATTTGGCGATT 345
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GCGCTAATCGGATCACTAGGAGCATTATACAATGGAGTTTTGTTGATAAATTTGGCGATT 360
Query 346 GCGTTGTTCGCGCTTGTTGCAATCGAGAGCAATAGCCAAAGTCTCGGCCGCACCTACGCG 405
|| ||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||
Sbjct 361 GCTTTGTTCGCGCTTGTTGCTATCGAGAGTAATAGCCAAAGTCTCGGCCGCACCTATGCG 420
Query 406 GTTCTTCTCTTCTGCGCTCTGCTTCTTGATATCTCATGGTTCATACTTTTCACCCAAGAG 465
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 421 GTTCTTCTTTTCTGCGCTCTTCTTCTTGATATCTCATGGTTCATACTTTTCACCGAAGAG 480
Query 466 ATTTGGAGCATTTCAGCTGAGACGTATGGAACGTTTTTCATATTTTCAGTGAAACTCACA 525
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 481 ATTTGGAGCATTTCAGCTGAGACGTATGGAACGTTTTTCATATTTTCAGTGAAACTTACA 540
Query 526 ATGGCGATGGAGATGATTGGGTTCTTTGTGAGGCTATCATCCTCGCTCTTATGGTTTCAG 585
||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 541 ATGGCGATGGAAATGATTGGTTTCTTTGTGAGGCTATCATCCTCGCTTTTATGGTTTCAG 600
Query 586 ATTTATAGACTGGGGGCTTCTATCGTGGACACTTCACTTCCTCGTGAAACTGATTCGGAT 645
|||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 601 ATTTATAGGCTGGGGGCTGCTATCGTGGACACTTCACTTCCTCGTGAAACAGATTCGGAT 660
Query 646 TTACGAAGTAGCTTCTTGAATCCACCAACTCCTGCTATAGCTAGACAATGTTCAGGTTCT 705
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 661 TTACGAAATAGCTTCTTGAATCCACCAACTCCTGCTATAGCTAGACAATGTTCAGGTGCT 720
Query 706 GAAGAAATCTTGGGAGGTTCCATCTACGACCCAGCCTACTACACCTCTCTATTTGAAGAA 765
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 721 GAAGAAATCTTGGGAGGTTCTATCTACGACCCTGCCTACTACACCTCTCTATTTGAAGAA 780
Query 766 AGCCAAACCAATATAAACTCACC-A---C-A----GGTGAATCATTATTCAGCTGGGAAC 816
||||||||||||||||| ||||| | | | ||| |||||||||||||||||||||
Sbjct 781 AGCCAAACCAATATAAATTCACCCAAAGCTACTCAGGTAAATCATTATTCAGCTGGGAAC 840
Query 817 AATGGATCACCATCTGCTGCAGAAGGC-TCTCATACTAAGTATCCCATATCCAGATCATT 875
||||||||||||||||||||||| ||| ||||||| ||||| |||||||| |||||| ||
Sbjct 841 AATGGATCACCATCTGCTGCAGA-GGCCTCTCATATTAAGTCTCCCATATTCAGATCCTT 899
Query 876 GCATTCAATTGATGAAGAGAAGGGCTTGAAGCAACCGGTTAGTTTCCAT-TGATTGAAGC 934
|||||||||||||||||||||||| |||||| |||||| || || || |||||||
Sbjct 900 GCATTCAATTGATGAAGAGAAGGGTTTGAAGAAACCGGA-AGAA---ATGTGTTTGAAGC 955
Query 935 AAACGGGGATGGCTTCAATATGATTCAAGAATGGTAGTGTGACCATTTGGGTATCTAAAC 994
||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||| |
Sbjct 956 AAACGGGGATGGCTTCAATATGATTCAAGAAGGGTAGTGTGACCATTTGTGCATCTAAGC 1015
Query 995 AAACGAGTTGTCTGTTGAGGTTTAGTTATCGGATTTTGAAGCTGATAAAAATGTTAGTCA 1054
|||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||
Sbjct 1016 AAACGAGTTGTCTGTTGAGGTTTAGTTATCGGATTTTGAAGCCGATAAAAATGCTATTCA 1075
Query 1055 TCAGTTTTCCATAAGCGAGGGAGAAATATGAAGAGTCGTGGTGTTTATACAAAGTAGAGC 1114
||||| ||||||||||||||||||| ||||||||||||| |||| |||||||| |||||
Sbjct 1076 TCAGTGTTCCATAAGCGAGGGAGAATTATGAAGAGTCGTCGTGTCCATACAAAGCAGAGC 1135
Query 1115 AAGAAGATTACATAACACCTACCAAAAGATGAGATTCTTCTATATGTTGAGGACAAGTAA 1174
|||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||
Sbjct 1136 AAGAAGATTACATAACACCTACAAAAACATGAGATTCT---ATATGTTGAGGACAAGTAA 1192
Query 1175 GCACTGTTTCTACTTTGCT-TTTCATTATTTATTTTGTCTGAAAATATGTTATTTTTGGG 1233
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1193 GCACTGTTTCTACTTTGCTATTTCATTATTTGTTTTGTCTGAAAATATGTTATTTTTGGG 1252
Query 1234 GATATATCATATATGGTTTAGATTAGAGTCGGAATCTAC 1272
||||||| |||||||| ||||||||||||||||
Sbjct 1253 GATATAT-------GGTTTAGAATAGAGTCGGAATCTAC 1284
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62549879070
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5