BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474616
Length=2681
Score E
Sequences producing significant alignments: (Bits) Value
AT1G55550.1 | Symbols: | P-loop containing nucleoside triphosp... 3709 0.0
> AT1G55550.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:20748915-20753079
FORWARD LENGTH=2797
Length=2797
Score = 3709 bits (2008), Expect = 0.0
Identities = 2440/2644 (92%), Gaps = 48/2644 (2%)
Strand=Plus/Plus
Query 1 ATGGAGAGAACAAGATCAAAACCGATTCGGGATTTACCCGAGACAATCCATTCGTTGCTC 60
||||||||||||||||| |||||| ||||| || ||||||||||||||||||| ||||||
Sbjct 1 ATGGAGAGAACAAGATCGAAACCGGTTCGGAATCTACCCGAGACAATCCATTCTTTGCTC 60
Query 61 GGTTTGAAATCTCATATGACTTCTGATTGGGTTAAATCTGTGTGCAACATCGTCAAGAAC 120
||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 61 GGTTTGAAATCTCATATGACTTCTGATTGGGTTAAATCTGTATGCAACATCGCCAAGAAT 120
Query 121 AATTCTTCAACGTCAAAGGAAGAAGAAGATGACTCTGTTTCTACCGATTTACAGAGCATT 180
| |||||||||||||||| |||||||||| |||| ||||||| ||||||||||||||||
Sbjct 121 ACTTCTTCAACGTCAAAGAAAGAAGAAGACGACTTTGTTTCTGTCGATTTACAGAGCATT 180
Query 181 AGAGATAAACTCTCTGCACTAACAGTTCAAGTCAATGATCAGAACAAACAGAGAAGACAG 240
|||||| | |||||||||||||| ||||||||||| ||||||||||||| |||||||||
Sbjct 181 AGAGATCAGCTCTCTGCACTAACTGTTCAAGTCAACGATCAGAACAAACTGAGAAGACAA 240
Query 241 ATTCTTAATGAGTTCTTGGACCTTAAAGGGAACATGCGTGTGTTTTGTCGAGTCAAACCC 300
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 241 ATTCTTAATGAGTTCTTGGACCTTAAAGGGAACATTCGTGTGTTTTGTCGAGTCAAACCC 300
Query 301 TTAGGAGCCTCCGAAAAGTTGAGGCCACCGGTTGCTTCGGATTCAAGAAATGTGATCATC 360
|| |||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 301 TTGGGAGCCACCGAAAAGTTGAGACCACCGGTTGCTTCGGATACAAGAAATGTGATCATC 360
Query 361 AAGTTGTCAGAAACCAAGAGAAAAACCTACAACTTCGACAGAGTTTTCCAACCTGATTCA 420
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AAGTTATCAGAAACCAAGAGAAAAACCTACAACTTCGACAGAGTTTTCCAACCTGATTCA 420
Query 421 TCCCAAGATGATGTTATCTTAGAGATTGAACCAGTAATCAAATCGGTTATCGATGGCTAC 480
||||||||||||||| |||||||||| |||||||||||||| || |||||||||||||||
Sbjct 421 TCCCAAGATGATGTTTTCTTAGAGATCGAACCAGTAATCAAGTCAGTTATCGATGGCTAC 480
Query 481 AACGCTTGTATTTTCGCGTATGGACAAACCGGTACTGGGAAAACTTATACAATGGAGGGT 540
|||||||| |||||||| || || |||||||||||||| |||||||||||||||||||||
Sbjct 481 AACGCTTGCATTTTCGCATACGGGCAAACCGGTACTGGAAAAACTTATACAATGGAGGGT 540
Query 541 CTTCCGAACTCTCCAGGTATCGTTCCTCGAGCGATCAAGGGATTGTTTAAACAAGTCGAG 600
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 541 CTTCCGAACTCTCCAGGTATCGTTCCTCGAGCGATCAAGGGATTGTTCAAACAAGTCGAG 600
Query 601 GAAAGCAATCATAAGTTTTTAATCCACTTCAGTATGCTTGAGATTTACATGGGAAATCTT 660
||||| ||||||| |||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 601 GAAAGTAATCATATGTTTACAATCCACTTTAGTATGCTTGAGATTTACATGGGAAATCTT 660
Query 661 AAAGACTTGCTTCTTTCTCAAGCAACTAAACCCATTTCTCCAATACCTCCAAGTCTTTCG 720
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AAAGACTTGCTTCTTTCTGAAGCAACTAAACCCATTTCTCCAATACCTCCAAGTCTTTCT 720
Query 721 ATTCACGCTGACGCAAGTGGAGAGATAGAGATCGATAACTTAGTGAATCTTAAAGTAGAT 780
|||||| | ||| ||| |||||||||||| || || ||||| ||||| |||||||| |||
Sbjct 721 ATTCACACAGACCCAAATGGAGAGATAGATATTGAGAACTTGGTGAAACTTAAAGTGGAT 780
Query 781 GACTTTAATCAAGTCTTCAA-GTTATACAAAGAAGGATGTCGAAACAGAGCAACTGCCTC 839
||||||||| || |||| || ||||||||||| ||| ||||| | |||||||||||||||
Sbjct 781 GACTTTAATGAAATCTT-AAGGTTATACAAAGTAGGTTGTCGTAGCAGAGCAACTGCCTC 839
Query 840 CACTAACTCTAACTCTGCTTCCAGCAGATCACACTGTATGATCCGTGTATCGGTCACTTG 899
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 840 CACTAACTCTAACTCTGTTTCCAGCAGATCACACTGTATGATCCGTGTATCGGTCACTAG 899
Query 900 TCTTGGAGCTTCTGAGAGACGGCGTGAAACAAACAAGATTTGGCTAGTGGATCTTGGAGG 959
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 TCTTGGAGCTCCTGAGAGACGGCGTGAAACAAACAAGATTTGGCTAGTGGATCTTGGAGG 959
Query 960 AAGCGAGCGTGTGTTGAAAACCAGAGCCACTGGTCTTCGTTTTGATGAAGGCAAAGCCAT 1019
||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 960 AAGCGAGCGCGTGTTGAAAACAAGAGCCACTGGTCGGCGTTTTGATGAAGGCAAAGCCAT 1019
Query 1020 TAATCTCTCTTTATCCGCTCTTGGAGATGTCATCAACTCTCTTCAACGCAAGAACTCTCA 1079
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 TAATCTCTCTTTATCTGCTCTTGGAGATGTCATCAACTCTCTTCAACGCAAGAACTCTCA 1079
Query 1080 CATTCCTTACAGGAACAGCAAGCTCACACAGGTTCTGAAAGACTCTCTCGGACAAGATTC 1139
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||
Sbjct 1080 CATTCCTTACAGGAACAGCAAGCTCACACAGGTTCTAAAAGACTCTCTCGGGCAAGACTC 1139
Query 1140 AAAAACGTTGATGCTTGTTCATATCAGCCCTAAAGAAGAAGATCTATGTGAAACCATATG 1199
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1140 AAAAACGTTGATGCTTGTTCATATCAGCCCTAAAGAGGATGATCTATGTGAAACCATATG 1199
Query 1200 TTCTTTAAACTTTGCAACGAGGGCAAAGAACATTCATTTAGGGCAGGACGAATCAACGGA 1259
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1200 TTCTTTAAACTTTGCAACGAGGGCAAAGAATATTCATTTAGGGCAGGACGAATCAACGGA 1259
Query 1260 AGAACAA-CAGAAAAAGGAGGCTGTGATGATGAATCTGCAGAAGATGATGGAAAAGATCG 1318
||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1260 AGAACAAGC-GAAAAAGGAGGCTGTGATGATGAATCTGCAGAAGATGATGGAAAAGATTG 1318
Query 1319 AACAAGAGCGCGAGATGTCGTTAAGAGAGATGAGAAATCTAAACAAGACGTTGGAGAAAT 1378
|||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1319 AACAAGAGCGTGAGATGTCGTTAAGAAAGATGAGAAATCTAAACGAGACGTTGGAGAAAC 1378
Query 1379 TCACTGGTAAGCCTCATGTTATTGAAGAAGAAGAAAAGGATGTGATTAGAGAAGAGATTC 1438
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 1379 TCACTGGTAAGCCTCATGTTATTGAAGAAGAAGAAAAGGATGTGGTTAGAGAAGTGATTC 1438
Query 1439 AAGTGACTCCaaaaaaaccaaaaaacaaaTCAAGACGTGCTTCAGATGTTTTTCCTAGCT 1498
| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1439 ATGTGACTCCAAAGAAACCAAGAAACAAATCAAGACGTGCTTCAGATGTTTTTCCTAGCT 1498
Query 1499 TCATGAGACCAACAGCTAGCAGCA---GAAGATTATCAGGAGCAGATTTTAGCGTAACCC 1555
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1499 TCATGAGACCAACAGCTAGCAGCAACAGAAGATTATCAGGAGCAGATTTTAGCGTAACCC 1558
Query 1556 CTAATGCTTCGGGCTAT-AAGTCTAGAAGGAACTCGATGATATCTGTCCGAGCTGAATCT 1614
||||| |||| ||| | ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1559 CTAATTCTTCAAGCT-TCAAGTCTAGAAGGAACTCAATGATATCTGTCCGAGCTGAATCT 1617
Query 1615 GTGCGCCTTCCGGTGAAGAAGAA------CAGATATGATTCTGCCTGTGACTCATCAGAC 1668
| | | ||||||||||||||||| ||||| ||||||||| |||||||||||||||
Sbjct 1618 GCGTGTCTTCCGGTGAAGAAGAAGAAGAACAGATTTGATTCTGCATGTGACTCATCAGAC 1677
Query 1669 AGGAGCGTTTCAAAATCGACTTGCGTTATGCGTCAAAATACATCAGATGATGCAACGGTG 1728
||||||||||| ||||||||| || ||||||||||||||||| |||||||||||||||||
Sbjct 1678 AGGAGCGTTTCGAAATCGACTAGCATTATGCGTCAAAATACAGCAGATGATGCAACGGTG 1737
Query 1729 TATAGTCAGGACATATCTGAATGTGACATTAAGTTGGTAGTGTCTGAGCACAAGCCAAAA 1788
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1738 TATAGTCAGGACATATCTGAATGTGACATTAAGTTGGTAGTGTCTGAACACAAGCCAAAA 1797
Query 1789 GCACTGCAGATGGGGCCTGGATCTGCGACAAAATCCCGCTCCAAGATCGGTAACTTCGAG 1848
| ||||||||||||||||| ||||||||||| ||||||||||| ||| |||||||||||
Sbjct 1798 CCGCTGCAGATGGGGCCTGGTTCTGCGACAAAGTCCCGCTCCAACATCAGTAACTTCGAG 1857
Query 1849 AAAGATGCGGCGCAGAAGAT-GGACGGAACAGAGTTTTCTAGGATTAACAGTTGGCTTCG 1907
||||||| | |||||| || || |||||||||||||| ||||||||||||||||||||
Sbjct 1858 AAAGATGTGATGCAGAAAATAGGT-GGAACAGAGTTTTCAAGGATTAACAGTTGGCTTCG 1916
Query 1908 TTCGCAATCTGAAAACAGAAATTACGTGCTTGACAAGGA-TCAACTTCCTGCGACTCC-- 1964
|||||||||||||||||| | |||||||||||||||| | |||||||||||||||||
Sbjct 1917 TTCGCAATCTGAAAACAGGAGTTACGTGCTTGACAAG-ACTCAACTTCCTGCGACTCATT 1975
Query 1965 -CC-A-AAA-C--AG---G-TCGTTGGAGAAGTCATCAACACAGAGTTTTACAACGGAGA 2014
|| | ||| | | | ||||||||||||||| ||||||||||||||||||||||||
Sbjct 1976 TCCTAGAAAACCTAAACAGATCGTTGGAGAAGTCACCAACACAGAGTTTTACAACGGAGA 2035
Query 2015 AGATCACTGGAAATGAGTTCTTGGAAAAATTGGAAGATATAGAAGAGTCTAAAACAGATG 2074
|||||||||||||||| || |||| || |||||||||| |||||||| |||
Sbjct 2036 AGATCACTGGAAATGAA--CT-GGAA-----GG----TATAGAAGAGACTAAAACAAATG 2083
Query 2075 AAACAGTGGTTAAACCTACACAAATGCTTAAAAAGCTGTTTGAGCTGCAATGTCTCTGTT 2134
| ||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 2084 AGACAGTGGTTAACCCTACACTGATGCTTAAAAAACTGTTTGAGCTGCAATGTCTCTGTT 2143
Query 2135 CTGCTGAAGAAGAGGATCAGATTTTGTCCAGATTCCCAAATCCTGGTTATGAGGATGTTG 2194
||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||
Sbjct 2144 CTGCTGAAGAAGAGGATCAGATTTTGTCCAGATTCCCAATTCCTGGCTATGAGGATGATG 2203
Query 2195 ATGAGTCTCTTTATCCTCCCGTTTTAGAAAACGATGGATTTAGCCAACACATAGACAATG 2254
||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 2204 ATGAGTCTCGTTATCCTCCAATTTTAGAAAACGATGGATTTAGCCAGCACATAGACAATG 2263
Query 2255 AATGGTTTGGAGTCAATCA---CAGTGCGGCTTGGGAGCGAGATTCACCAGCCACGATCC 2311
||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||
Sbjct 2264 AATGGTTTGGAGTCAATAATTACAGTGCGGATTGGGAGCGAGATTCACCAGCCACGATCC 2323
Query 2312 CGTTGTTAGAACGTGAACCGGATCTCAAACAGCTGTTACCGGAATTGGCTTTCGATC-AT 2370
||||||||||| | |||||||||||||||||||||||||||||||||| ||| |||| ||
Sbjct 2324 CGTTGTTAGAATGCGAACCGGATCTCAAACAGCTGTTACCGGAATTGGGTTTGGATCGAT 2383
Query 2371 TCACTTAAACCAAGAGGTTTGGCGTTCGCGGAGGATGTAGCTCCACCATTGCTTAGAGCA 2430
||||||||||||||||||||||| |||| |||| || ||||||||||||||||||||||
Sbjct 2384 -CACTTAAACCAAGAGGTTTGGCGGTCGCCGAGGGTGCAGCTCCACCATTGCTTAGAGCA 2442
Query 2431 CAAGAAACCTTGGGAGAAAGAGGAAAAGCTCCAACGTTCATGCAGAAAGTTCAGGCTTTA 2490
|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 2443 CAAGAAACCTTGGGAGAAAGAGGAAAAGGTCCAACGTTCATGCAGAAACTTCAGGCTTTA 2502
Query 2491 TGCTTCCGCATTCTTCTGGGATTAGGGTTTATTGATGTGGGCTATGGTAATGACTTTTTC 2550
|||||||| ||||||||||||||||||||||| |||||||||| |||||||||||| |||
Sbjct 2503 TGCTTCCGTATTCTTCTGGGATTAGGGTTTATGGATGTGGGCTTTGGTAATGACTTCTTC 2562
Query 2551 AGTGGATTAACCAAGTAAAGACAAGAACTGATTCAATTCGTCTTTGAGATCCCCAAAAGA 2610
| || ||||| ||||||||||| ||| ||| ||||||||| | | |||||||||||||
Sbjct 2563 AACGGGTTAACAAAGTAAAGACATTAACAGATCCAATTCGTCATCGTGATCCCCAAAAGA 2622
Query 2611 TGCA 2614
||||
Sbjct 2623 TGCA 2626
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 133143066722
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5