BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474617
Length=1929
Score E
Sequences producing significant alignments: (Bits) Value
AT1G55560.1 | Symbols: sks14 | SKU5 similar 14 | chr1:20754321... 3094 0.0
AT1G55570.1 | Symbols: sks12 | SKU5 similar 12 | chr1:20757767... 693 0.0
> AT1G55560.1 | Symbols: sks14 | SKU5 similar 14 | chr1:20754321-20756656
REVERSE LENGTH=1932
Length=1932
Score = 3094 bits (1675), Expect = 0.0
Identities = 1855/1940 (96%), Gaps = 20/1940 (1%)
Strand=Plus/Plus
Query 1 CAAAGGATTCATTAAGAGCAAAAACTAGTTTTGCTTT--AATCTTTTTTGTAGGAAAGGG 58
||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 2 CAAAGGATTCATTAAGAGCAAAAACTAGTTTTGCTTTCCTTTTTTTTTTGTAGGAAAGGG 61
Query 59 TTAATTATACGTAACACAGAAACCAAAATAATTCTCTTTTTCCTCTAGAAAAAGAG---A 115
||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |
Sbjct 62 TTAATTATACGTAACACAGAAACAAAAACAATTCTCTTTTTCCTCTAGAAAAAGAGATTA 121
Query 116 AAATAAAAATGGAGGGGAGGTTATTGACGGTGTTGGTCTGCCTCGTCTCTACGGTGGCTA 175
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 122 AAAAAAAAATGGAGGGGAGGTTATTGACGGTGTTGGTCTGCCTCGTCTCTACGGTGGCGA 181
Query 176 TCGTGAACGCCGGTGATCCTTACTTCTTCTATACATGGAACGTGACTTACGGAACCGCCT 235
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 182 TCGTGAACGCCGGTGATCCTTACTTCTTCCATACATGGAACGTGACTTACGGAACTGCCT 241
Query 236 CACCTCTCGGTGTTCCTCAAAAGGTGATTCTCATCAACGGTCAATTCCCTGGTCCTAACC 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 CACCTCTCGGTGTTCCTCAAAAGGTGATTCTCATCAACGGTCAATTCCCTGGTCCTAACC 301
Query 296 TTAACTCAACCTCTAACAACAACGTCGTCATCAATGTCTTCAACCACCTAGACGAACCTT 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 TTAACTCAACCTCTAACAACAACGTCGTCATCAATGTCTTCAACCACCTAGACGAACCTT 361
Query 356 TCCTCTTGACCTGGAGCGGGATTCAGCACAGGAAGAACTGCTGGCAAGATGGTGTGGCTG 415
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 362 TCCTCTTGACCTGGAGTGGGATTCAGCATAGGAAGAACTGCTGGCAAGATGGTGTGGCTG 421
Query 416 GGACTTCATGCCCCATCCCAGCAGGACAGAACTTTACTTATCATTTCCAACCTAAGGACC 475
| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 422 GAACTTCATGCCCCATCCCAGCTGGACAGAACTTTACTTACCATTTCCAACCTAAGGACC 481
Query 476 AGATTGGTTCTTACTTCTATTACCCGACCACTTCTCTCCACCGCTTTGCTGGTGGTTTTG 535
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 482 AGATTGGTTCCTACTTCTATTACCCAACCACTTCTCTCCACCGCTTTGCTGGTGGTTTTG 541
Query 536 GTGGTCTCCGTGTCAACAGCCGACTCCTTATTCCTGTTCCTTATGCTGATCCTGAGGATG 595
|||||||||||||||||||||| ||||| ||||| |||||||||||||||||||| ||||
Sbjct 542 GTGGTCTCCGTGTCAACAGCCGTCTCCTAATTCCCGTTCCTTATGCTGATCCTGAAGATG 601
Query 596 ACTACACTGTTCTTCTCGGTGACTGGTACACAGCTGGCCACACTGCTCTCAAGAACTTCC 655
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 ACTACACTGTCCTTCTCGGTGACTGGTACACAGCTGGCCACACTGCTCTCAAGAACTTCC 661
Query 656 TTGACAGTGGACGCACCCTTGGATTGCCTAACGGTGTTTTGATCAATGGAAAGTCTGGAA 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 TTGACAGTGGACGCACCCTTGGATTGCCTAACGGTGTTTTGATCAATGGAAAGTCTGGAA 721
Query 716 AGGTGGGAGGAAAGAACGAGCCTTTGTTCACAATGAAGCCTGGAAAGACTTACAAGTACA 775
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 AGGTTGGAGGAAAGAACGAGCCTTTGTTCACAATGAAGCCTGGAAAGACTTACAAGTACA 781
Query 776 GGCTCTGCAATGTTGGGTTCAAGTCTACACTTAACTTCAGGATCCAGAACCACAAGATGA 835
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 782 GGCTCTGCAATGTTGGGTTCAAGTCTACACTTAACTTCAGGATTCAGAACCACAAGATGA 841
Query 836 AGCTTGTGGAGATGGAAGGATCCCATGTTCTTCAGAACGACTACGACTCTCTCGATGTCC 895
|||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 842 AGCTCGTGGAGATGGAAGGATCCCATGTTATTCAGAACGACTATGACTCTCTCGATGTCC 901
Query 896 ATGTCGGCCAGTGCTTTTCAGTTCTTGTGACTGCTGACCAGGCAGCTAAGGATTACTACA 955
|||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 902 ATGTTGGCCAGTGCTTTTCAGTTCTTGTGACTGCTAACCAAGCAGCTAAGGATTACTACA 961
Query 956 TGGTTGCATCGACTAGGTTCCTCAAGAAGGAGTTGAGCACCGTGGGTGTGATCCGGTATG 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 962 TGGTTGCATCGACTAGGTTCCTCAAGAAGGAGTTGAGCACCGTGGGTGTGATCCGGTATG 1021
Query 1016 AGGGAAGCAACGTTCAGGCTTCAGCTGAGCTCCCCAAGGCTCCCATTGGATGGGCTTGGT 1075
||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||
Sbjct 1022 AGGGAAGCAACGTTCAGGCTTCAACTGAGCTACCCAAGGCTCCTGTTGGATGGGCTTGGT 1081
Query 1076 CTTTGAACCAGTTTAGGTCTTTCAGGTGGAACCTTACCGCTAGTGCTGCCAGGCCTAACC 1135
||||||||||||| |||||||||||||||||||||||| ||| ||||| ||||||||||
Sbjct 1082 CTTTGAACCAGTTCAGGTCTTTCAGGTGGAACCTTACCTCTAACGCTGCAAGGCCTAACC 1141
Query 1136 CACAGGGCTCATACCATTACGGAAAAATCAACATCACCCGTAGCATCAAGCTTGTCAACT 1195
| || |||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1142 CCCAAGGCTCATACCATTACGGAAAGATCAACATTACCCGTAGCATCAAGCTTGTCAACT 1201
Query 1196 CTAAGAGCGTGGTTGACGGCAAAGTCCGGTTTGGTTTCAACGGTGTATCACATGTTGACA 1255
|||| || ||||||||||| |||||||||||||||||||| ||||||||||| |||||||
Sbjct 1202 CTAAAAGTGTGGTTGACGGTAAAGTCCGGTTTGGTTTCAATGGTGTATCACACGTTGACA 1261
Query 1256 CCGAGACTCCTTTGAAGCTAGCTGAGTACTTCCAGATGTCAGAGAAGGTGTTCAAGTACA 1315
||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||
Sbjct 1262 CCGAGACTCCTTTGAAGCTTGCTGAGTACTTCCAAATGTCAGAGAAGGTTTTCAAGTACA 1321
Query 1316 ATGTGATCAAGGACGAGCCTGCAGCCAAAATCACAGCATTGACTGTACAGCCTAATGTTC 1375
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1322 ATGTGATCAAGGACGAGCCTGCAGCCAAAATCACAGCATTGACTGTACAACCTAATGTTC 1381
Query 1376 TCAACATCACTTTCCGTACCTTTGTAGAGATCATTTTCGAGAACCACGAGAAGAGCATGC 1435
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1382 TCAACATCACTTTCCGTACCTTTGTAGAGATCATTTTCGAGAACCACGAGAAGACCATGC 1441
Query 1436 AGTCATTCCATTTGGATGGTTACTCCTTCTTCGCTGTCGCGTCTGAGCCAGGAAGGTGGA 1495
||||||| ||||||||||| |||||||||||||||||||| ||||||||||| |||||||
Sbjct 1442 AGTCATTTCATTTGGATGGCTACTCCTTCTTCGCTGTCGCTTCTGAGCCAGGGAGGTGGA 1501
Query 1496 CACCTGAAAAGAGAAAGAACTACAACTTGCTCGATGCGGTTAGCAGACACACCGTGCAAG 1555
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1502 CACCTGAAAAGAGAGAGAACTACAACTTGCTCGATGCGGTTAGCAGACACACCGTGCAAG 1561
Query 1556 TATACCCCAAGTCTTGGTCAGCTATCCTCTTGACATTCGACAACGCCGGTATGTGGAACA 1615
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1562 TCTACCCCAAGTCTTGGTCAGCTATCCTTTTGACATTCGACAACGCCGGTATGTGGAACA 1621
Query 1616 TCAGGTCTGAGAACTTGGAGAGGAGATACCTAGGCGAGCAATTGTATGTCAGTGTTCTAT 1675
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1622 TCAGGTCTGAGAACTTGGAGAGGAAATACCTAGGCGAGCAATTGTATGTCAGTGTTCTAT 1681
Query 1676 CACCCGAGAAATCGCTAAGGGACGAGTACAACATCCCCCTCAACACTAACCTCTGTGGCA 1735
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1682 CACCGGAGAAATCGCTAAGGGACGAGTACAACATCCCCCTCAACACAAACCTCTGTGGCA 1741
Query 1736 TCGTCAAGGGCTTGCCATTACCTGCACACTACTCCTAAATCAATATTCAATTAACTACT- 1794
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1742 TCGTCAAGGGCTTGCCATTACCTGCACACTACTCCTAAATCAATATTCAATTAACTACTA 1801
Query 1795 CT--ACAAAGTGGGGTGCATTATTAAAATTAACTTATTAACCCTTTCCTAACT---AAGT 1849
|| ||||||||||||||| ||||||| |||||| |||||||||||||||| | ||||
Sbjct 1802 CTCTACAAAGTGGGGTGCAATATTAAA-TTAACTAATTAACCCTTTCCTAAATTTTAAGT 1860
Query 1850 GTAATTTGTAAACTACAGTTCCACTTCTTTCATATACTATCATTAAACCATAATCATATA 1909
||||||||||||| | || ||||||||||||||||||||||||||||||||||||
Sbjct 1861 GTAATTTGTAAAC--C----CC--TTCTTTCATATACTATCATTAAACCATAATCATATA 1912
Query 1910 CCAAGTTTTGCTTTCATTAC 1929
||||||||||||||||||||
Sbjct 1913 CCAAGTTTTGCTTTCATTAC 1932
> AT1G55570.1 | Symbols: sks12 | SKU5 similar 12 | chr1:20757767-20760076
FORWARD LENGTH=2088
Length=2088
Score = 693 bits (375), Expect = 0.0
Identities = 1171/1546 (76%), Gaps = 91/1546 (6%)
Strand=Plus/Plus
Query 211 TGGAACGTGACTTACGGAACCGCCTCACCTCTCGGTGTTCCTCAA-AAGGTGATTCTCAT 269
||||||||||| ||||||||||| || |||||||| ||||| ||| || || || |||||
Sbjct 212 TGGAACGTGACGTACGGAACCGCATCTCCTCTCGGCGTTCCACAACAA-GTCATCCTCAT 270
Query 270 CAACGGTCAATTCCCTGGTCCTAACCTTAACTCAACCTCTAACAACAACGTCGTCATCAA 329
||||||||||||||||||||||||| | ||||| || ||||||||||||||| || | ||
Sbjct 271 CAACGGTCAATTCCCTGGTCCTAACATCAACTCGACTTCTAACAACAACGTCATCGTTAA 330
Query 330 TGTCTTCAACCACCTAGACGAACCTTTCCTCTTGACCTGGAGCGGGATTC-AGCACAGGA 388
|||||||||| |||| ||||| ||||||||| | |||||| || ||| || |||||||||
Sbjct 331 TGTCTTCAACAACCTCGACGAGCCTTTCCTCATCACCTGG-GCCGGAATCCAGCACAGGA 389
Query 389 AGAACTGCTGGCAAGATGGTGTGGCTGGGACT-TCATGCCCCATCCCAGCAGGACAGAAC 447
||||||||||||||||||| ||||| || | || || ||||| | || ||||||
Sbjct 390 AGAACTGCTGGCAAGATGGAACAGCTGGAACAATG-TGTCCGATCCCTCCGGGTCAGAAC 448
Query 448 TTTACTTATCATTTCCAACCTAAGGACCAGATTGGTT-CTTACTTCTATTACCCGACCAC 506
||||| || |||||||| || ||||| || || ||| || ||||||| |||||||||||
Sbjct 449 TTTACATACCATTTCCAGCCAAAGGATCAAATCGGTAGCT-ACTTCTACTACCCGACCAC 507
Query 507 TTCTC-TCCACCGCTTT-GCTGGTGGTTTTGGTGGTCTCCGTGTCAACAGCCGACTCCTT 564
| | | || || | |||||||| |||||||| || ||||| |||||||| || ||
Sbjct 508 AGC-CATGCATCG-TGCCGCTGGTGGCTTTGGTGGCCTTCGTGTGAACAGCCGTCTA-TT 564
Query 565 -ATTCCTGTTCCTTATGCTGATCCTGAGGATGACTACACTGTTCTTCTCGGTGACTGGTA 623
|| || |||||||| ||||| ||||| |||||||||||| | ||| || ||||||||
Sbjct 565 GATCCCGGTTCCTTACGCTGACCCTGAAGATGACTACACTATCCTTATCAACGACTGGTA 624
Query 624 CAC-AGCTGGCCACACTGCT-CTCAAGAACTTCCTTGACAGTGGACGCACCCTTGGATTG 681
||| | | ||| ||| | |||||||| ||||| |||||||| || || |||| | |
Sbjct 625 CACCAAAAG-CCATACT-CAGCTCAAGAAGTTCCTCGACAGTGGTCGTACTATTGG-TCG 681
Query 682 -CCTAACGGTGTTTTGATCAATGG-AAAGTCTGG-AAAGGTGGGAGGAAA-GAACGAGCC 737
||| | || || | ||||| || ||| || || ||| || || || | | ||
Sbjct 682 TCCTGATGGCATTCTCATCAACGGTAAA-TCCGGGAAAACTGAT-GGCTCTGA-CAAACC 738
Query 738 T-TTGTTCACAATGAAGCCTGG-AAAGACTTACA-AGTACAGGCTCTGCAATGTTGGGT- 793
| || ||||| ||||||| || ||| || |||| ||| | | |||| || || ||||
Sbjct 739 TCTT-TTCACTTTGAAGCCAGGGAAA-ACATACAGAGTTC-GTATCTGTAACGT-GGGTC 794
Query 794 TCAAGTC-TACACTTAACTTCAGGATCCAGAACCACAAGATGAAGCTTGTGGAGATGGAA 852
||||| | | | |||||||||||||| ||||||||||| ||||||||||| |||||||||
Sbjct 795 TCAAGGCAT-CTCTTAACTTCAGGATTCAGAACCACAAAATGAAGCTTGTCGAGATGGAA 853
Query 853 GGATCCCATGTTCTTCAGAACGACTACGACTCTCTCGATGTCCATGTCGGCCAGTGCTTT 912
|| || |||||||| || |||||||| ||||| || |||||||||||||| ||||| |||
Sbjct 854 GGCTCACATGTTCTACAAAACGACTATGACTCGCTTGATGTCCATGTCGGTCAGTG-TTT 912
Query 913 TCAGT-TCTT-GTGACTGCTGACCAGGCAGCTAAGGATTACTACATGGTTGCATCGACTA 970
| || | | || || || ||||| | | |||| |||||||||||| |||| || || |
Sbjct 913 TG-GTGTAATCGTCACGGCAGACCAAGAACCTAAAGATTACTACATGATTGCTTCCACAA 971
Query 971 GGTTCCTCAAGAAGGAGT-TGAGCA-CCGTGGG-TGTGATCCGGTATGAGGGAAGCAACG 1027
||||| | ||||| | ||| || || || | || |||| || |||||| |||| |
Sbjct 972 GGTTCTTGAAGAAACC-TCTGA-CAACCACAGGAT-TGCTCCGCTACGAGGGAGGCAAAG 1028
Query 1028 TTCAGGCTTCAGCTGAGCTCCCCAAGGCTCCCATTGGATGGGCTTGGTCTTTGAACCAGT 1087
|| || || || |||| || ||| ||| |||| ||||||||||||||||| ||||
Sbjct 1029 GTCCTGCGTCTTCTCAGCTACCTGCGGCCCCCGTTGGTTGGGCTTGGTCTTTGAATCAGT 1088
Query 1088 TTAGGTCTTTCAGGTGGAACCTT-ACCGCTAGTGCTGCCAGGCCTAACCCACAGGGCTCA 1146
| ||||||||||||||| || || || || || || || ||||||||||| |||||
Sbjct 1089 ACCGATCTTTCAGGTGGAAC-TTGACAGCCAGCGCCGCTAGACCTAACCCACAAGGCTCG 1147
Query 1147 TACCATTACGGAAAAATCAACATCACCCGTAGCATCAAGCTTGTCAACTCTAAGAGCGTG 1206
||||| ||||||||||| || ||||| || | ||||||||| || ||| || || | |
Sbjct 1148 TACCACTACGGAAAAATTAATATCACTCGCACCATCAAGCTCGTGAACACTCAGGGAAAG 1207
Query 1207 GTTGACGGCAAAG-TCCGGTTTG-GTTTCAACGGTGTATCACATGTTGACACC-GAGACT 1263
|| || ||||| | | ||| | ||| | ||| || || || ||| || |||||
Sbjct 1208 GTCGATGGCAA-GCTTAGGTACGCGTTG-AGCGGGGTCTCCCACACCGAC-CCTGAGACA 1264
Query 1264 CCTTTGAAGCTAGCTGAGTACTTC--CAGATGTCAGAGAAGGTGTTCAAGTACAATGTGA 1321
||| | ||||| |||||||||||| | | || | || ||||| ||||||||| | |
Sbjct 1265 CCTCTCAAGCTTGCTGAGTACTTCGGC-GTTG-CTGATAAGGTTTTCAAGTACGACACCA 1322
Query 1322 TCAAGGACGAGCC---TGCAGC-CA-A--AATCACAGCATTGA-CTGTACAGCCTAATGT 1373
|| |||| | || | | | || | || ||| || || | | || || |||||
Sbjct 1323 TCTCGGACAACCCAAATCCTGATCAGATCAAGAACATCAA-GATC-GAAC--CC-AATGT 1377
Query 1374 TCTCAACATCACTTTCCGTACCTTTGTAGA-GATCATTTTCGAGAACCACGAGAAGAGCA 1432
||| ||||||||| ||| ||||| | || | || | |||||||||||||||| |||
Sbjct 1378 TCTTAACATCACTCACCGCACCTTCATTGAAG-TCGTGTTCGAGAACCACGAGAGGAGTG 1436
Query 1433 TGCAGTCATTC-CATTTGGATGGTTACTCCTTCTTCGCTGTCGCG-TCTGAGCCAGGAAG 1490
| ||||| || |||||||| || || |||||||||||||| ||| | ||||||||| |
Sbjct 1437 TCCAGTC-TTGGCATTTGGACGGCTATTCCTTCTTCGCTGTAGCGGT-TGAGCCAGGGAC 1494
Query 1491 GTGGACACCTGAAAAGAGAAAGAACTACAAC-TTGCTCGATGCGGTTAGCAGACACACCG 1549
|||||||| || ||||| |||||||||||| || || ||||| || ||| ||||||| |
Sbjct 1495 ATGGACACCAGAGAAGAGGAAGAACTACAACCTT-CTAGATGCAGTGAGCCGACACACAG 1553
Query 1550 TGCAAGTATACCCCAAGTCTTGGTCAGCTATCCT-CTTGACATTCGACAAC-GCCGGTAT 1607
| || || |||||||||| |||| | || ||| | || |||||||||||| | || ||
Sbjct 1554 TCCAGGTCTACCCCAAGTGTTGGGCTGCAATCTTGCTC-ACATTCGACAACTGT-GGAAT 1611
Query 1608 GTGGAACATCAGGTCTGAGAACTTGGAGAGGA-GATACCTAGG-CGAGCAATTGTATGTC 1665
||||||||| ||||| |||||| || || | | ||| | || | ||||| |||| | |
Sbjct 1612 GTGGAACATTAGGTCGGAGAACGCAGAAAG-ACGCTACTTGGGAC-AGCAACTGTACG-C 1668
Query 1666 A-GTGTTCTA-TCACCCGAGAAATCGCTAAGGGACGAGTACAACAT 1709
| | || || ||||| || ||||| || ||||||| ||||||||
Sbjct 1669 AAGCGT-CTTGTCACCAGAAAAATCTCTCCGGGACGAATACAACAT 1713
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95531637135
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5