BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474620
Length=1995
Score E
Sequences producing significant alignments: (Bits) Value
AT1G55590.1 | Symbols: | RNI-like superfamily protein | chr1:2... 3110 0.0
> AT1G55590.1 | Symbols: | RNI-like superfamily protein | chr1:20769320-20771871
REVERSE LENGTH=2095
Length=2095
Score = 3110 bits (1684), Expect = 0.0
Identities = 1846/1924 (96%), Gaps = 12/1924 (1%)
Strand=Plus/Plus
Query 79 TCATGGAGGAAGTGACGAGATCTGTGTTAGCGGAGGAGATACTAAAGCGTTTAGATCTGG 138
||||||||||||||||||||||||||||||| || || ||||| ||||||||||||||||
Sbjct 114 TCATGGAGGAAGTGACGAGATCTGTGTTAGCAGAAGAAATACTGAAGCGTTTAGATCTGG 173
Query 139 AGAATCTCTGTTCCGTCGCCTGCGTTTCCACCACTCTCCGCTCCGCCGTTGTCTCCGGCG 198
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 174 AGAATCTCTGTTCCGTCGCATGCGTTTCCACCACTCTCCGCTCCGCCGTTGTTTCCGGCG 233
Query 199 TTCTACCTtctcttacctctctcgatctctctgttttctctcCGGACGATGAAACTCTGA 258
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 234 TTCTTCCTTCTCTTACCTCCCTCGATCTCTCTGTTTTCTCTCCGGACGATGAAACTCTGA 293
Query 259 ATCACGTGTTGCGTGGTTGTATCGGACTTAGTAGCTTAACTCTGAATTGTCTCCGCCTTA 318
|||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 294 ATCACGTGCTGCGTGGTTGTATCGGACTCAGCAGCTTAACTCTGAATTGTCTCCGCCTTA 353
Query 319 ACGCTGCTTCTGTGCGT-GAGGTTCTCGGGCCACATCTCCGAGAGCTTCACTTGCTCAGG 377
||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||
Sbjct 354 ACGCTGCTTCTGTGCGTGGA-GTTCTCGGGCCACATCTCCGAGAACTTCACTTGCTCAGG 412
Query 378 TGTTCGCTTTTATCCTCCACCGTCCTCACTTCCATCGGCATCCTCTGCCCAAATCTCCGG 437
||||| ||||||||||||||||||||||||| ||| |||| |||||||||||||||||||
Sbjct 413 TGTTCACTTTTATCCTCCACCGTCCTCACTTACATTGGCACCCTCTGCCCAAATCTCCGG 472
Query 438 GTTCTTTCCCTGGAAATGGCAGACCTGGATTCTCCTGCTGTTTTTCAGTCTAACTTGACG 497
|||||| | |||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 473 GTTCTTACTCTGGAAATGGCAGACCTGGATTCTCCCGATGTTTTTCAGTCTAACTTGACG 532
Query 498 CAGATGCTTAACGGGTGTCCGTATCTGGAGTCTCTGCAACTTAATATCCGAGGTATCCTA 557
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 533 CAGATGCTTAACGGGTGTCCTTATCTGGAGTCTCTGCAACTTAATATCCGAGGTATCCTA 592
Query 558 GTAGATGCCACCGCTTTCCAGTCTGTTAGATTCTCCTTGCCAGAAACTCTCAAAGTTCTA 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 593 GTAGATGCCACCGCTTTCCAGTCTGTTAGATTCTCCTTGCCAGAAACTCTCAAAGCTCTA 652
Query 618 AGGTTACAGCCACTTCTTGAGTCTGAGGCAATTCTTCTCATGAACAGATTCAAAGTCACT 677
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 653 AGGTTACAGCCACTTCTTGAGTCTGAGGCAATTCTTCTCATGAACAGATTCAAAGTGACT 712
Query 678 GGAACTTATTTGTCTCAGCCTGA-T-T-ATAGTGCCTTGCTTTCTCCTTCACCTTCTTTT 734
||||||||||| ||||||||||| | | ||||||||||||| ||||||||||||||||||
Sbjct 713 GGAACTTATTTATCTCAGCCTGATTATAATAGTGCCTTGCTATCTCCTTCACCTTCTTTT 772
Query 735 ACTTTGCAAACCCTGTCTCTTGTCCTGGACTTGATATCTGACAGGCTAATCATAGCTATC 794
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 773 ACTTTGCAAAGCCTGTCTCTTGTCCTGGACTTGATATCTGACAGGCTTATCATAGCTATC 832
Query 795 ACAGGTTCTCTTCCTCAGCTTGTCAAACTGGACCTTGAAGACCGTCCTGAAAAAGAGCCA 854
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 833 ACAGGTTCTCTTCCTCAACTTGTCAAACTGGACCTTGAAGATCGTCCTGAAAAAGAGCCA 892
Query 855 TTTCCTGACAGTGACTTGACTTACACTGGGCTTCAGGCTCTGGGTTATTGTCAGCAACTC 914
||||| |||| |||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 893 TTTCCCGACAATGACTTGACTTACACTGGGCTTCAGGCTCTCGGTTTTTGTCAGCAACTC 952
Query 915 ACAAGCCTCTCTCTGGTTCGAACTTGTTACAACCGCAAGATATCATTCAAGAGAATAAAC 974
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 953 ACAAGCCTCTCTCTGGTTCGAACTTGTTACAACCGCAAGATATCATTCAAGAGAATAAAC 1012
Query 975 GATATGGGTATATTTCTTCTTTCCGAGGCTTGCAAGGGTTTAGAGTCAGTGAGACTCGGT 1034
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1013 GATATGGGTATATTTCTTCTCTCCGAGGCTTGCAAGGGTTTAGAGTCTGTGAGACTCGGT 1072
Query 1035 GGGTTCCCAAAAGTCAGCGACGCTGGTTTTGCATCGCTCCTTCACTCATGTCGGAACTTG 1094
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1073 GGGTTCCCAAAAGTCAGCGACGCTGGTTTTGCGTCGCTCCTTCACTCATGTCGGAACTTG 1132
Query 1095 AAAAAGTTTGAAATACGAGGTGCCTTCCTGTTATCTGATTTGGCATTCCATGACGTCACA 1154
|||||||||||| | ||||||||||||||||| |||||||||||||| ||||| ||||||
Sbjct 1133 AAAAAGTTTGAAGTTCGAGGTGCCTTCCTGTTGTCTGATTTGGCATTTCATGATGTCACA 1192
Query 1155 GGGTCTTCCTGTTCTCTTCAAGAGGTCAGACTCTTGACGTGCCCTCTCATAACCAGCGAA 1214
|||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||
Sbjct 1193 GGGTCTTCCTGTTCTCTTCAAGAGGTCAGACTCTCGACGTGCCCTCTCATAACAAGTGAA 1252
Query 1215 GCCGTGAAGAAACTGGGGTTGTGTGGCAATCTTGAGGTGCTCGACTTGGGCAGCTGCAAA 1274
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1253 GCTGTGAAGAAACTGGGGTTGTGTGGCAATCTTGAGGTGCTCGACTTGGGCAGCTGCAAA 1312
Query 1275 AGTATATCAGATTCTTGCCTCAACTCTGTTTCAGCCCTCAGAAAGTTAACGTCTCTGAAT 1334
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1313 AGTATATCAGATTCTTGCCTCAACTCTGTTTCAGCCCTCAGAAAGTTAACTTCTCTGAAT 1372
Query 1335 CTCGCAGGAGCTGATGTAACCGATAGTGGCATGCTTGCACTTGGTAAATCAGATGTTCCC 1394
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1373 CTCGCTGGAGCTGATGTAACCGATAGTGGCATGCTTGCACTTGGTAAGTCAGATGTTCCC 1432
Query 1395 ATCACGCAACTGTCTCTCCGCGGCTGTAGGAGAGTCAGTGACAGAGGAATAT-CTCATCT 1453
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1433 ATCACGCAACTGTCTCTCCGCGGCTGTAGGAGAGTCAGTGACAGAGGAATATCCT-ATCT 1491
Query 1454 ATTAAACAATGAAGGAACAATCAGCAAAACATTATCAACACTTGATCTCGGTCACATGCC 1513
|| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1492 GTTGAACAATGAAGGAACAATCAGCAAAACATTGTCAACACTTGATCTCGGTCATATGCC 1551
Query 1514 AGGAATCTCAGACAGAGCCATCCACACAATCACACACTGTTGCAAGGCTTTAACAGAGCT 1573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1552 AGGAATCTCAGACAGAGCCATCCACACAATCACACACTGTTGCAAGGCTTTAACAGAGCT 1611
Query 1574 GAGTATCAGGAGTTGCTTTCACGTAACAGATTCTTCGATAGAGTCGCTGGCTACAAGGGA 1633
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 1612 GAGTATCAGGAGTTGCTTTCACGTAACAGATTCTTCGATAGAGTCCCTGGCTACATGGGA 1671
Query 1634 AAGACAAGCAGAGGGAGGAAGCAAACAATTGAGGAAGCTCAATGTCCATAACTGTGTGAG 1693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1672 AAGACAAGCAGAGGGAGGAAGCAAACAATTGAGGAAGCTCAATGTCCATAACTGTGTGAG 1731
Query 1694 CTTAACGACTGGAGCTCTGAGATGGTTAAGCAAGCCGTCTTTCGCGGGTCTGCATTGGCT 1753
|||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1732 CTTAACTACTGGAGCACTGAGATGGTTAAGCAAGCCGTCTTTTGCGGGTCTGCATTGGCT 1791
Query 1754 CGGATTAGGACAAACACGATTCGCTGGTCGCAAAGAGACGGTTACAGCTACGATTTGTGG 1813
|||| | ||||||||||||||||| ||||| ||||||||||||||||||| |||||||||
Sbjct 1792 CGGAATGGGACAAACACGATTCGCGGGTCGAAAAGAGACGGTTACAGCTATGATTTGTGG 1851
Query 1814 ACAGAGGCCATGGCTCACGTTGTGCTTTGATGGATGTGAGCTTGGATGCTATGATGGTTG 1873
||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 1852 ACAGAGGCCGTGGCTCACGTTGTGCTTCGATGGATGTGAGCTTGGATGCTCTGATGGTTG 1911
Query 1874 GGAATTCCACACGCCACAACGCCACTGAAGAACTCAATTGTCTCACTAGTTCATGTATTG 1933
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1912 GGAATTCCACACGCCACAACGCCACTGAAGAACTCA-TTGTCTCACTAGTTCATGTATTG 1970
Query 1934 TATAAAATCGTTCAGAAACATGATTCAGTAGGCTGTGTTAATTT-ATTTAAAC-TTCTTA 1991
|||||||||||||||||||||||||||||||| ||||| ||||| |||||||| || |||
Sbjct 1971 TATAAAATCGTTCAGAAACATGATTCAGTAGGATGTGT-AATTTTATTTAAACCTT-TTA 2028
Query 1992 AAAA 1995
||||
Sbjct 2029 AAAA 2032
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98844873105
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5