BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg474623 Length=2713 Score E Sequences producing significant alignments: (Bits) Value AT1G55620.2 | Symbols: CLC-F, ATCLC-F | chloride channel F | ch... 4222 0.0 > AT1G55620.2 | Symbols: CLC-F, ATCLC-F | chloride channel F | chr1:20787134-20791189 REVERSE LENGTH=2749 Length=2749 Score = 4222 bits (2286), Expect = 0.0 Identities = 2570/2707 (95%), Gaps = 20/2707 (1%) Strand=Plus/Plus Query 18 ACTCGGAATCTGAATCCGATCAAATCTGAACAGCACCGGCGACGAATCTCTGCGGCGTAG 77 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 43 ACTCGGAATCTGAATCCGATCAAATCTGAACAACACCGGCGACGAATCTCTGCGGCGTAG 102 Query 78 ATTTATATTTCGTCCCGGAGAGAC-GAAATTGATGCAATCGTGAACTATCACGGCGAAGG 136 ||||| ||||| |||||| ||||| ||||||||||| | ||||| |||||||||||||| Sbjct 103 ATTTAGATTTCATCCCGGGGAGACTTAAATTGATGCAGTAGTGAAATATCACGGCGAAGG 162 Query 137 GATGATGTGTTGGT--AACAGCCAATTGAAATCAGATAATGTCATCGGGAGGAGCCGGAG 194 |||| | ||||||| || |||||||||||||||| | |||||||||||||||||||||| Sbjct 163 GATGGTTTGTTGGTAAAAGAGCCAATTGAAATCAG-TTATGTCATCGGGAGGAGCCGGAG 221 Query 195 AGTACAACGAAGACAGACATCTGTTACGATCCACCGACGGCGATGAAGTAGGCATTGGCG 254 |||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||| Sbjct 222 AGTATAACGAAGACAGACATCTGTTACGATCCACCGACGGAGATGAAGTCGGCATTGGCG 281 Query 255 GAGGAGATGGTGATCTCGATGTTGAATCTCAGTCTCCGGCTGTCAGAAGTGGAGCTGGAG 314 ||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||| Sbjct 282 GAGGAGAGGGTGATCTAGATGTTGAATCTCAGTCTCCGGCTATCAGAAGTGGAGCTGGAG 341 Query 315 GAGTTAGGGATCTGTTCATGCATCTAGATCGGAGATTTTCTCTTTCCGGTCGTCGTTTAA 374 |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| Sbjct 342 GAGTTAGGGATCTGTTCAAGCATATAGATCGGAGATTTTCTCTTTCCGGTCGTCGTTTAA 401 Query 375 GCTTTAAACGGATGGAGAATATCAGAGTGGATAGAGAGCGACATAATCCGTCTTCCTCTT 434 | |||||||||||||||||||||||||| ||||||||||| |||||||| ||||| |||| Sbjct 402 GTTTTAAACGGATGGAGAATATCAGAGTCGATAGAGAGCGCCATAATCCTTCTTCTTCTT 461 Query 435 CCGCGTTATCGGCTGCTGGAGTAGAAGATGGTGGTGGTATCAGTAATTTACATAGCGGCG 494 | ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| | Sbjct 462 CAGCGTTTTCGGCTGCTGGAGAAGAAGATGGTGGTGGTATCAGTAATTTACATAGCGTTG 521 Query 495 ATGATCGAAATGACGAGTACGGGTTTGATGAAGAAGTGCTCGGAGATAGTGCTCCACCTG 554 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 522 ATGATCGAAATGACGAGTACGGGTTTGATGAAGAAGTTCTCGGAGATAGTGCTCCACCTG 581 Query 555 AGTGGGCTCTGCTTCTCATCGGATGTCTTATCGGTGTTGCCGCTGGAATTTGTGTCGCCG 614 ||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||| Sbjct 582 AGTGGGCTCTGCTTCTCATTGGCTGTCTTATTGGTGTTGCCGCTGGAATTTGTGTCGCCG 641 Query 615 GCTTCAATAAAGGGGTTCATGTCATTCATGAGTGGGCATGGGCTGGTACTCCCAACGAAG 674 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 642 GCTTCAATAAAGGGGTTCATGTCATTCATGAGTGGGCATGGGCTGGTACTCCCAACGAAG 701 Query 675 GTGCTGCATGGCTTCGTCTACAGAGACTTGCTGATACTTGGCACCGAATTCTTCTAATTC 734 |||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||| Sbjct 702 GTGCTGCATGGCTTCGTCTACAGAGACTAGCTGATACTTGGCATCGGATTCTTCTAATTC 761 Query 735 CGGTCACTGGAGGTGTTATAGTAGGAATGATGCACGGTTTGCTTGAGATCTTAGACCAAA 794 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 762 CGGTCACTGGAGGTGTTATAGTAGGAATGATGCACGGTTTGCTTGAGATCTTAGACCAAA 821 Query 795 TCAGGCAATCTACTTCTTCTCAAAGACAAGGACTAGATTTTCTTGCTGGTATTTATCCAG 854 | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 822 TAAGGCAATCTAATTCTTCTCAAAGACAAGGACTAGATTTTCTTGCTGGTATTTATCCAG 881 Query 855 TGATAAAGGCCATCCAAGCTGCTGTGACCCTTGGTACAGGATGTTCACTGGGGCCTGAGG 914 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 882 TGATAAAGGCCATCCAAGCTGCTGTGACCCTTGGTACAGGATGTTCACTGGGTCCTGAGG 941 Query 915 GACCTAGCGTCGACATTGGAAAGTCATGTGCCAACGGTTTTGCACTCATGATGGAAAACA 974 |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 942 GACCTAGCGTTGACATTGGAAAATCATGTGCCAACGGTTTTGCACTCATGATGGAAAACA 1001 Query 975 ACAGAGAAAGGAGAATAGCTCTCACTGCAGCTGGTGCGGCTTCCGGGATTGCATCTGGTT 1034 |||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||| Sbjct 1002 ACAGAGAAAGAAGAATAGCTCTCACCGCAGCTGGTGCGGCTTCTGGGATTGCATCTGGTT 1061 Query 1035 TCAATGCAGCAGTGGCGGGTTGTTTCTTTGCTATCGAGACCGTTTTAAGACCTCTACGGG 1094 |||||||||||||||||||||||||||||||||| || || |||||||||||| |||| | Sbjct 1062 TCAATGCAGCAGTGGCGGGTTGTTTCTTTGCTATTGAAACTGTTTTAAGACCTTTACGTG 1121 Query 1095 CCGAGAACTCGCCTCCATTTACCACTGCAATGATAATATTGGCCTCTGTTATATCATCGA 1154 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1122 CCGAGAACTCGCCTCCATTTACCACTGCAATGATAATATTGGCCTCTGTTATATCATCGA 1181 Query 1155 CCGTGTCAAATGCACTGCTTGGGACTCAATCCGCTTTCACAGTTCCATCATACGACCTTA 1214 | ||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||| | Sbjct 1182 CTGTGTCAAATGCTCTGCTTGGGACTCAATCAGCTTTCACAGTTCCCTCATACGACCTGA 1241 Query 1215 AGTCAGCTGCAGAGCTCCCTCTGTACCTGATATTAGGCATGCTTTGCGGTGCTGTCAGCG 1274 |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| | Sbjct 1242 AGTCTGCTGCAGAGCTCCCTCTGTACCTGATACTAGGCATGCTTTGCGGTGCTGTCAGTG 1301 Query 1275 TTGTTTTTTCTCGTCTCGTCACATGGTTTACCAAGTCGTTCGACTTCATCAAAGACAAAT 1334 ||||||||||||| |||||||| |||||||||||||| ||||| |||||||||||||||| Sbjct 1302 TTGTTTTTTCTCGGCTCGTCACGTGGTTTACCAAGTCATTCGATTTCATCAAAGACAAAT 1361 Query 1335 TTGGTCTTCCTGCTATTGTGTGCCCTGCACTAGGTGGTTTAGGAGCTGGAATTATTGCTC 1394 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1362 TTGGTCTTCCTGCTATCGTGTGCCCTGCACTAGGTGGTTTAGGAGCTGGAATTATTGCTC 1421 Query 1395 TCAAGTACCCTGGAATTTTGTATTGGGGGTTTACAAATGTTGAGGAAATCCTGCATACTG 1454 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1422 TCAAGTACCCTGGAATTTTGTATTGGGGGTTTACAAATGTTGAGGAAATCCTGCATACTG 1481 Query 1455 GAAAAAGTGCTTCAGCTCCTGGAATCTGGTTGTTAGCTCAGTTAGCCGCAGCCAAAGTTG 1514 ||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||| Sbjct 1482 GAAAAAGTGCTTCAGCTCCTGGAATCTGGTTATTAGCTCAGTTAGCCGCTGCAAAAGTTG 1541 Query 1515 TGGCTACAGCTCTTTGCAAAGGCTCTGGGCTTGTAGGCGGTCTATATGCACCAAGTTTGA 1574 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1542 TGGCTACAGCTCTTTGCAAAGGCTCTGGGCTTGTAGGTGGTCTATATGCACCAAGTTTGA 1601 Query 1575 TGATTGGTGCTGCTGTTGGTGCTGTATTTGGTGGTTCGGCTGCTGAGATTATTAACAGAG 1634 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1602 TGATTGGTGCTGCTGTTGGTGCTGTATTTGGGGGTTCGGCTGCTGAGATTATTAACAGAG 1661 Query 1635 CTATTCCTGGTAATGCTGCTGTTGCTCAACCACAAGCTTACGCTCTGGTTGGAATGGCAG 1694 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1662 CTATTCCTGGTAATGCTGCTGTTGCTCAACCACAAGCTTATGCTCTGGTTGGAATGGCAG 1721 Query 1695 CGACTCTAGCTTCCATGTGCTCTGTTCCTTTAACATCAGTATTACTGCTGTTCGAGCTAA 1754 |||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1722 CGACACTAGCTTCAATGTGCTCTGTTCCCTTAACATCAGTATTACTGCTGTTCGAGCTAA 1781 Query 1755 CGAAAGATTATAGAATTTTGCTTCCCCTCATGGGAGCTGTTGGTTTAGCAATATGGGTTC 1814 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1782 CGAAAGATTATAGAATTTTGCTTCCCCTCATGGGAGCAGTTGGTTTAGCAATATGGGTTC 1841 Query 1815 CCTCTGTGGCAAACCAAGGCAAAGAGAGTGATTCGTCTGAAGGTCGCAGCACAGGAAGAG 1874 |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct 1842 CCTCTGTGGCAAACCAAGGCAAAGAGAGTGATTCATCTGAAGGTCGTAGCACAGGAAGAG 1901 Query 1875 GATACTCTTCTATTTCACCTTCCGACCGTAAAACCGAAGGCGTCTGGAGACACACTGATG 1934 ||||||||||| ||||||||||||| |||||||||||||| ||||||||||| || ||| Sbjct 1902 GATACTCTTCTCTTTCACCTTCCGAACGTAAAACCGAAGGAGTCTGGAGACATACGGATA 1961 Query 1935 ATGCTGACTCCCTTGAGCTTACTGTCATAGAGAACCCTGACCATAATTCCTTTTTGGATG 1994 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1962 ATGCTGACTCCCTTGAGCTTACCGTCATAGAGAACCCTGACCATAATTCCTTTTTGGATG 2021 Query 1995 AAGAAACTATTCTGGAAGACTTAAA-GATAATGCGGGTTATGTCAAAGAACTACGTGAAA 2053 |||| |||||||||||||||||||| | || |||||||||||||||||||||| |||||| Sbjct 2022 AAGAGACTATTCTGGAAGACTTAAAAGTTA-TGCGGGTTATGTCAAAGAACTATGTGAAA 2080 Query 2054 GTTTCTTCAGGAACAACTCTAAGAGAAGCAAGAAACATCCTTAAAGACAGCCACCAAAAC 2113 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 2081 GTTTCTTCAGGAACAACTCTAAGAGAAGCAAGAAACATCCTTAAAGAGAGCCACCAAAAC 2140 Query 2114 TGCCTTATGGTGGTCGATGACGATGATTTTCTAGCCGGAATTCTAACACACGGCGATATC 2173 ||| ||||||||||||||||||||||||||||||| ||||| ||||||||||| || || Sbjct 2141 TGCATTATGGTGGTCGATGACGATGATTTTCTAGCTGGAATCCTAACACACGGTGACATA 2200 Query 2174 AGAAGATTCTTGTCAAATAACGTCTCTACAATCTTTGATGAGAATACATGTCCGGTTTCT 2233 ||||||| |||||| ||||||| |||||||||||| |||||||||||||||||||||||| Sbjct 2201 AGAAGATACTTGTCCAATAACGCCTCTACAATCTTAGATGAGAATACATGTCCGGTTTCT 2260 Query 2234 TCTGTGTGTACTAAGAAAATAAGCTA-CAGAGGCCAAGAACGCGGTTTACTTACTTGTTA 2292 ||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||| Sbjct 2261 TCTGTATGTACTAAGAAAATAAGCTATC-GAGGCCAAGAACGCGGTTTACTTACTTGTTA 2319 Query 2293 TCCAGACGCGACGGTTGGTGTAGCGAAGGAGTTGATGGAGGCAAGAGGTGTGAAGCAATT 2352 ||||||||| || ||||||||||| ||||||||||||||||| |||||||| |||||||| Sbjct 2320 TCCAGACGCCACAGTTGGTGTAGCCAAGGAGTTGATGGAGGCTAGAGGTGTAAAGCAATT 2379 Query 2353 ACCTGTTGTAAAACGAGGTGAAGTAATTCACAAAGGAAAACGGAGGAAACTGCTTGGCCT 2412 |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| Sbjct 2380 ACCTGTTGTAAAACGAGGTGAAGTAATTCACAAAGGGAAACGAAGGAAACTGCTTGGCCT 2439 Query 2413 CCTTCATTATGACTCCATTTGGAGTTTTCTCAGAGATGAAATGAGTCGTAGGAGATCGAT 2472 ||||||||| || |||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 2440 CCTTCATTACGATTCCATTTGGACTTTTCTCAGAGATGAAATGAGTCGTAGGAGATCGAT 2499 Query 2473 CAACGACCGGAGAAAAGACAAAGAGGTTGGTGCAAATGGGCATTGATTGGGTTTGTGCCC 2532 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 2500 CAACGACCGGAGAAAAGACAAAGAGGTTGGTACAAATGGGCATTGATTGGGTTTGTGCCC 2559 Query 2533 attttggtatagctttttatttt-tatatt-cttctttttaatttttGAGGTCCAAATTG 2590 |||||||||||||||||| |||| ||| || |||||||| ||||||||||||| |||||| Sbjct 2560 ATTTTGGTATAGCTTTTT-TTTTATATTTTTCTTCTTTTAAATTTTTGAGGTC-AAATTG 2617 Query 2591 ATTAGAACGAGGAAAAAACAAGATCCTAAAAGTAATATTAATATATACCTCTGTATTAAT 2650 |||||||||||| ||| ||||||| ||||| |||||||||||||||||||| |||| | Sbjct 2618 ATTAGAACGAGGCAAA--CAAGATCGTAAAAATAATATTAATATATACCTCT--ATTAGT 2673 Query 2651 TTTGAAAATATTG-TTCTCACCAAAG---CAGACTCATATCACATCATCAAAAGAAATCT 2706 ||||||||||||| |||||||||||| ||||||||| ||| || |||||||||||||| Sbjct 2674 TTTGAAAATATTGCTTCTCACCAAAGTAACAGACTCATCTCATATAATCAAAAGAAATCT 2733 Query 2707 AGTGAAA 2713 ||||||| Sbjct 2734 AGTGAAA 2740 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 134748408898 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5