BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474623
Length=2713
Score E
Sequences producing significant alignments: (Bits) Value
AT1G55620.2 | Symbols: CLC-F, ATCLC-F | chloride channel F | ch... 4222 0.0
> AT1G55620.2 | Symbols: CLC-F, ATCLC-F | chloride channel F |
chr1:20787134-20791189 REVERSE LENGTH=2749
Length=2749
Score = 4222 bits (2286), Expect = 0.0
Identities = 2570/2707 (95%), Gaps = 20/2707 (1%)
Strand=Plus/Plus
Query 18 ACTCGGAATCTGAATCCGATCAAATCTGAACAGCACCGGCGACGAATCTCTGCGGCGTAG 77
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 43 ACTCGGAATCTGAATCCGATCAAATCTGAACAACACCGGCGACGAATCTCTGCGGCGTAG 102
Query 78 ATTTATATTTCGTCCCGGAGAGAC-GAAATTGATGCAATCGTGAACTATCACGGCGAAGG 136
||||| ||||| |||||| ||||| ||||||||||| | ||||| ||||||||||||||
Sbjct 103 ATTTAGATTTCATCCCGGGGAGACTTAAATTGATGCAGTAGTGAAATATCACGGCGAAGG 162
Query 137 GATGATGTGTTGGT--AACAGCCAATTGAAATCAGATAATGTCATCGGGAGGAGCCGGAG 194
|||| | ||||||| || |||||||||||||||| | ||||||||||||||||||||||
Sbjct 163 GATGGTTTGTTGGTAAAAGAGCCAATTGAAATCAG-TTATGTCATCGGGAGGAGCCGGAG 221
Query 195 AGTACAACGAAGACAGACATCTGTTACGATCCACCGACGGCGATGAAGTAGGCATTGGCG 254
|||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 222 AGTATAACGAAGACAGACATCTGTTACGATCCACCGACGGAGATGAAGTCGGCATTGGCG 281
Query 255 GAGGAGATGGTGATCTCGATGTTGAATCTCAGTCTCCGGCTGTCAGAAGTGGAGCTGGAG 314
||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 282 GAGGAGAGGGTGATCTAGATGTTGAATCTCAGTCTCCGGCTATCAGAAGTGGAGCTGGAG 341
Query 315 GAGTTAGGGATCTGTTCATGCATCTAGATCGGAGATTTTCTCTTTCCGGTCGTCGTTTAA 374
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 342 GAGTTAGGGATCTGTTCAAGCATATAGATCGGAGATTTTCTCTTTCCGGTCGTCGTTTAA 401
Query 375 GCTTTAAACGGATGGAGAATATCAGAGTGGATAGAGAGCGACATAATCCGTCTTCCTCTT 434
| |||||||||||||||||||||||||| ||||||||||| |||||||| ||||| ||||
Sbjct 402 GTTTTAAACGGATGGAGAATATCAGAGTCGATAGAGAGCGCCATAATCCTTCTTCTTCTT 461
Query 435 CCGCGTTATCGGCTGCTGGAGTAGAAGATGGTGGTGGTATCAGTAATTTACATAGCGGCG 494
| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 462 CAGCGTTTTCGGCTGCTGGAGAAGAAGATGGTGGTGGTATCAGTAATTTACATAGCGTTG 521
Query 495 ATGATCGAAATGACGAGTACGGGTTTGATGAAGAAGTGCTCGGAGATAGTGCTCCACCTG 554
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 522 ATGATCGAAATGACGAGTACGGGTTTGATGAAGAAGTTCTCGGAGATAGTGCTCCACCTG 581
Query 555 AGTGGGCTCTGCTTCTCATCGGATGTCTTATCGGTGTTGCCGCTGGAATTTGTGTCGCCG 614
||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||
Sbjct 582 AGTGGGCTCTGCTTCTCATTGGCTGTCTTATTGGTGTTGCCGCTGGAATTTGTGTCGCCG 641
Query 615 GCTTCAATAAAGGGGTTCATGTCATTCATGAGTGGGCATGGGCTGGTACTCCCAACGAAG 674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 642 GCTTCAATAAAGGGGTTCATGTCATTCATGAGTGGGCATGGGCTGGTACTCCCAACGAAG 701
Query 675 GTGCTGCATGGCTTCGTCTACAGAGACTTGCTGATACTTGGCACCGAATTCTTCTAATTC 734
|||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||
Sbjct 702 GTGCTGCATGGCTTCGTCTACAGAGACTAGCTGATACTTGGCATCGGATTCTTCTAATTC 761
Query 735 CGGTCACTGGAGGTGTTATAGTAGGAATGATGCACGGTTTGCTTGAGATCTTAGACCAAA 794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 762 CGGTCACTGGAGGTGTTATAGTAGGAATGATGCACGGTTTGCTTGAGATCTTAGACCAAA 821
Query 795 TCAGGCAATCTACTTCTTCTCAAAGACAAGGACTAGATTTTCTTGCTGGTATTTATCCAG 854
| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 822 TAAGGCAATCTAATTCTTCTCAAAGACAAGGACTAGATTTTCTTGCTGGTATTTATCCAG 881
Query 855 TGATAAAGGCCATCCAAGCTGCTGTGACCCTTGGTACAGGATGTTCACTGGGGCCTGAGG 914
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 882 TGATAAAGGCCATCCAAGCTGCTGTGACCCTTGGTACAGGATGTTCACTGGGTCCTGAGG 941
Query 915 GACCTAGCGTCGACATTGGAAAGTCATGTGCCAACGGTTTTGCACTCATGATGGAAAACA 974
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 942 GACCTAGCGTTGACATTGGAAAATCATGTGCCAACGGTTTTGCACTCATGATGGAAAACA 1001
Query 975 ACAGAGAAAGGAGAATAGCTCTCACTGCAGCTGGTGCGGCTTCCGGGATTGCATCTGGTT 1034
|||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 1002 ACAGAGAAAGAAGAATAGCTCTCACCGCAGCTGGTGCGGCTTCTGGGATTGCATCTGGTT 1061
Query 1035 TCAATGCAGCAGTGGCGGGTTGTTTCTTTGCTATCGAGACCGTTTTAAGACCTCTACGGG 1094
|||||||||||||||||||||||||||||||||| || || |||||||||||| |||| |
Sbjct 1062 TCAATGCAGCAGTGGCGGGTTGTTTCTTTGCTATTGAAACTGTTTTAAGACCTTTACGTG 1121
Query 1095 CCGAGAACTCGCCTCCATTTACCACTGCAATGATAATATTGGCCTCTGTTATATCATCGA 1154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1122 CCGAGAACTCGCCTCCATTTACCACTGCAATGATAATATTGGCCTCTGTTATATCATCGA 1181
Query 1155 CCGTGTCAAATGCACTGCTTGGGACTCAATCCGCTTTCACAGTTCCATCATACGACCTTA 1214
| ||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||| |
Sbjct 1182 CTGTGTCAAATGCTCTGCTTGGGACTCAATCAGCTTTCACAGTTCCCTCATACGACCTGA 1241
Query 1215 AGTCAGCTGCAGAGCTCCCTCTGTACCTGATATTAGGCATGCTTTGCGGTGCTGTCAGCG 1274
|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 1242 AGTCTGCTGCAGAGCTCCCTCTGTACCTGATACTAGGCATGCTTTGCGGTGCTGTCAGTG 1301
Query 1275 TTGTTTTTTCTCGTCTCGTCACATGGTTTACCAAGTCGTTCGACTTCATCAAAGACAAAT 1334
||||||||||||| |||||||| |||||||||||||| ||||| ||||||||||||||||
Sbjct 1302 TTGTTTTTTCTCGGCTCGTCACGTGGTTTACCAAGTCATTCGATTTCATCAAAGACAAAT 1361
Query 1335 TTGGTCTTCCTGCTATTGTGTGCCCTGCACTAGGTGGTTTAGGAGCTGGAATTATTGCTC 1394
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1362 TTGGTCTTCCTGCTATCGTGTGCCCTGCACTAGGTGGTTTAGGAGCTGGAATTATTGCTC 1421
Query 1395 TCAAGTACCCTGGAATTTTGTATTGGGGGTTTACAAATGTTGAGGAAATCCTGCATACTG 1454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1422 TCAAGTACCCTGGAATTTTGTATTGGGGGTTTACAAATGTTGAGGAAATCCTGCATACTG 1481
Query 1455 GAAAAAGTGCTTCAGCTCCTGGAATCTGGTTGTTAGCTCAGTTAGCCGCAGCCAAAGTTG 1514
||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||
Sbjct 1482 GAAAAAGTGCTTCAGCTCCTGGAATCTGGTTATTAGCTCAGTTAGCCGCTGCAAAAGTTG 1541
Query 1515 TGGCTACAGCTCTTTGCAAAGGCTCTGGGCTTGTAGGCGGTCTATATGCACCAAGTTTGA 1574
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1542 TGGCTACAGCTCTTTGCAAAGGCTCTGGGCTTGTAGGTGGTCTATATGCACCAAGTTTGA 1601
Query 1575 TGATTGGTGCTGCTGTTGGTGCTGTATTTGGTGGTTCGGCTGCTGAGATTATTAACAGAG 1634
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1602 TGATTGGTGCTGCTGTTGGTGCTGTATTTGGGGGTTCGGCTGCTGAGATTATTAACAGAG 1661
Query 1635 CTATTCCTGGTAATGCTGCTGTTGCTCAACCACAAGCTTACGCTCTGGTTGGAATGGCAG 1694
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1662 CTATTCCTGGTAATGCTGCTGTTGCTCAACCACAAGCTTATGCTCTGGTTGGAATGGCAG 1721
Query 1695 CGACTCTAGCTTCCATGTGCTCTGTTCCTTTAACATCAGTATTACTGCTGTTCGAGCTAA 1754
|||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1722 CGACACTAGCTTCAATGTGCTCTGTTCCCTTAACATCAGTATTACTGCTGTTCGAGCTAA 1781
Query 1755 CGAAAGATTATAGAATTTTGCTTCCCCTCATGGGAGCTGTTGGTTTAGCAATATGGGTTC 1814
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1782 CGAAAGATTATAGAATTTTGCTTCCCCTCATGGGAGCAGTTGGTTTAGCAATATGGGTTC 1841
Query 1815 CCTCTGTGGCAAACCAAGGCAAAGAGAGTGATTCGTCTGAAGGTCGCAGCACAGGAAGAG 1874
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1842 CCTCTGTGGCAAACCAAGGCAAAGAGAGTGATTCATCTGAAGGTCGTAGCACAGGAAGAG 1901
Query 1875 GATACTCTTCTATTTCACCTTCCGACCGTAAAACCGAAGGCGTCTGGAGACACACTGATG 1934
||||||||||| ||||||||||||| |||||||||||||| ||||||||||| || |||
Sbjct 1902 GATACTCTTCTCTTTCACCTTCCGAACGTAAAACCGAAGGAGTCTGGAGACATACGGATA 1961
Query 1935 ATGCTGACTCCCTTGAGCTTACTGTCATAGAGAACCCTGACCATAATTCCTTTTTGGATG 1994
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1962 ATGCTGACTCCCTTGAGCTTACCGTCATAGAGAACCCTGACCATAATTCCTTTTTGGATG 2021
Query 1995 AAGAAACTATTCTGGAAGACTTAAA-GATAATGCGGGTTATGTCAAAGAACTACGTGAAA 2053
|||| |||||||||||||||||||| | || |||||||||||||||||||||| ||||||
Sbjct 2022 AAGAGACTATTCTGGAAGACTTAAAAGTTA-TGCGGGTTATGTCAAAGAACTATGTGAAA 2080
Query 2054 GTTTCTTCAGGAACAACTCTAAGAGAAGCAAGAAACATCCTTAAAGACAGCCACCAAAAC 2113
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2081 GTTTCTTCAGGAACAACTCTAAGAGAAGCAAGAAACATCCTTAAAGAGAGCCACCAAAAC 2140
Query 2114 TGCCTTATGGTGGTCGATGACGATGATTTTCTAGCCGGAATTCTAACACACGGCGATATC 2173
||| ||||||||||||||||||||||||||||||| ||||| ||||||||||| || ||
Sbjct 2141 TGCATTATGGTGGTCGATGACGATGATTTTCTAGCTGGAATCCTAACACACGGTGACATA 2200
Query 2174 AGAAGATTCTTGTCAAATAACGTCTCTACAATCTTTGATGAGAATACATGTCCGGTTTCT 2233
||||||| |||||| ||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 2201 AGAAGATACTTGTCCAATAACGCCTCTACAATCTTAGATGAGAATACATGTCCGGTTTCT 2260
Query 2234 TCTGTGTGTACTAAGAAAATAAGCTA-CAGAGGCCAAGAACGCGGTTTACTTACTTGTTA 2292
||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 2261 TCTGTATGTACTAAGAAAATAAGCTATC-GAGGCCAAGAACGCGGTTTACTTACTTGTTA 2319
Query 2293 TCCAGACGCGACGGTTGGTGTAGCGAAGGAGTTGATGGAGGCAAGAGGTGTGAAGCAATT 2352
||||||||| || ||||||||||| ||||||||||||||||| |||||||| ||||||||
Sbjct 2320 TCCAGACGCCACAGTTGGTGTAGCCAAGGAGTTGATGGAGGCTAGAGGTGTAAAGCAATT 2379
Query 2353 ACCTGTTGTAAAACGAGGTGAAGTAATTCACAAAGGAAAACGGAGGAAACTGCTTGGCCT 2412
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 2380 ACCTGTTGTAAAACGAGGTGAAGTAATTCACAAAGGGAAACGAAGGAAACTGCTTGGCCT 2439
Query 2413 CCTTCATTATGACTCCATTTGGAGTTTTCTCAGAGATGAAATGAGTCGTAGGAGATCGAT 2472
||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2440 CCTTCATTACGATTCCATTTGGACTTTTCTCAGAGATGAAATGAGTCGTAGGAGATCGAT 2499
Query 2473 CAACGACCGGAGAAAAGACAAAGAGGTTGGTGCAAATGGGCATTGATTGGGTTTGTGCCC 2532
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2500 CAACGACCGGAGAAAAGACAAAGAGGTTGGTACAAATGGGCATTGATTGGGTTTGTGCCC 2559
Query 2533 attttggtatagctttttatttt-tatatt-cttctttttaatttttGAGGTCCAAATTG 2590
|||||||||||||||||| |||| ||| || |||||||| ||||||||||||| ||||||
Sbjct 2560 ATTTTGGTATAGCTTTTT-TTTTATATTTTTCTTCTTTTAAATTTTTGAGGTC-AAATTG 2617
Query 2591 ATTAGAACGAGGAAAAAACAAGATCCTAAAAGTAATATTAATATATACCTCTGTATTAAT 2650
|||||||||||| ||| ||||||| ||||| |||||||||||||||||||| |||| |
Sbjct 2618 ATTAGAACGAGGCAAA--CAAGATCGTAAAAATAATATTAATATATACCTCT--ATTAGT 2673
Query 2651 TTTGAAAATATTG-TTCTCACCAAAG---CAGACTCATATCACATCATCAAAAGAAATCT 2706
||||||||||||| |||||||||||| ||||||||| ||| || ||||||||||||||
Sbjct 2674 TTTGAAAATATTGCTTCTCACCAAAGTAACAGACTCATCTCATATAATCAAAAGAAATCT 2733
Query 2707 AGTGAAA 2713
|||||||
Sbjct 2734 AGTGAAA 2740
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 134748408898
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5