BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474625
Length=989
Score E
Sequences producing significant alignments: (Bits) Value
AT4G00315.1 | Symbols: | F-box/RNI-like/FBD-like domains-conta... 1290 0.0
AT1G55660.1 | Symbols: | FBD, F-box and Leucine Rich Repeat do... 1262 0.0
AT5G56700.1 | Symbols: | FBD / Leucine Rich Repeat domains con... 150 2e-35
> AT4G00315.1 | Symbols: | F-box/RNI-like/FBD-like domains-containing
protein | chr4:137404-138888 FORWARD LENGTH=1326
Length=1326
Score = 1290 bits (698), Expect = 0.0
Identities = 910/1009 (90%), Gaps = 28/1009 (3%)
Strand=Plus/Plus
Query 1 AACGTCCGTGAGTTATGTCTCAAGCTTT-TATCTTTTGCGGAGCGTCCAACTAAGTTGCC 59
||||||||||||||| |||||||||||| || |||||||||||||||||||||| |||||
Sbjct 319 AACGTCCGTGAGTTAAGTCTCAAGCTTTGTA-CTTTTGCGGAGCGTCCAACTAAATTGCC 377
Query 60 TAGTAGCTTGTATATCTGCAAATCGATTGTGATCTTGACACTGAAAGACGAGATTCTCGT 119
| ||||| |||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 378 CAAAAGCTTATATAAATGCAAATCGATTGTGATCTTGAAACTGAAAGACGAGATTCTCGT 437
Query 120 GGATGTTCCTGGTACGGTATGTCTCCCCTCCCTGAAAACGTTGTTCCTTAGACGTGTGAC 179
||||||||| ||| |||||||||||||||| ||||||| ||||||||| ||||||||||
Sbjct 438 TGATGTTCCTCGTAAGGTATGTCTCCCCTCCTTGAAAACATTGTTCCTTGGACGTGTGAC 497
Query 180 TTACTCGGATGAAAATTCTCTTCACCGACTTCTTTCCAACTGCCCTGTTCTTGAGGATCT 239
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 498 TTACTCGGATGAAGATTCTCTTCACCGACTTCTCTCCAACTGCCCTGTTCTTGAGGATCT 557
Query 240 TGTTGTGGAAAGAGATGA-AATTGACAATTTGGGAAAAGTGAGTGTGATTGTCAAGTCCT 298
||||||||| ||||| | ||||||||||||||| ||| |||||||| ||||||||||||
Sbjct 558 AGTTGTGGAACGAGAT-AGAATTGACAATTTGGGGAAATTGAGTGTGGTTGTCAAGTCCT 616
Query 299 TGCAGAGACTAACCCTAAAGATGTC-TGTTGCTTGTGATCTTGATGGGCTTATGATGATT 357
||||||||||||||||||||||||| || | ||||| ||||||||||| ||||||||| |
Sbjct 617 TGCAGAGACTAACCCTAAAGATGTCTTG-TCCTTGTCATCTTGATGGGATTATGATGAAT 675
Query 358 ACTCCTTCTTTGAAGTATTTCAAAGTCACTGATGAAAGGC----TA--GACA--G-TAAT 408
|||||||||||||||||||| ||||||||||||||||||| | || | | ||||
Sbjct 676 ACTCCTTCTTTGAAGTATTTGAAAGTCACTGATGAAAGGCAAGAGAGTGATAGTGATAAT 735
Query 409 --G-GTGATAGTGATAGTCCTCGATACGCCTACTCTTTTGAAGCTATGCCTAAGTTGGAG 465
| ||||||||||||||||||||||| |||| |||||||| ||||||||||||||||
Sbjct 736 GAGAGTGATAGTGATAGTCCTCGATACTTCTACGATTTTGAAGATATGCCTAAGTTGGAG 795
Query 466 GAGGCAGATTTTTTATTGACATTCCAAAATATCAAAAAGTGT-TTTAGATCAT-TCACAT 523
|||||||||||| ||||||||||||||||||||||||||| | |||| || | ||||||
Sbjct 796 GAGGCAGATTTTGTATTGACATTCCAAAATATCAAAAAGT-TCTTTAAAT-TTGTCACAT 853
Query 524 CTGTTAAGCGGCTTTCGTTATGCTTAGGAGTCTACAAAGAAGAGTCTTTATATCATGAGG 583
|| ||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 854 CTATTAAGCGTCTTTCGTTATGCTTGGGAGTCTACACCGAAGAGTCTTTATATCATGAGG 913
Query 584 GTCTTGTTTTCAACCAGCTTGAAAC-TTTGAAGATATGTTCATGTGATTCAGATTGGTCA 642
||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 914 GTCTTGTCTTCAACCAGCTTG-AACAATTGAAGATATGTTCATGTGATTCAGATTGGTCA 972
Query 643 ATTTTACTTGCTCGGTTACTCAGGGA-TTCTCCTAATTTACGAGATCTCGAGACTTACGT 701
||||||||| ||||||||||| | | |||||| ||||||||||| |||||| |||||||
Sbjct 973 ATTTTACTTTCTCGGTTACTC-GAAAGTTCTCCCAATTTACGAGAGCTCGAGGCTTACGT 1031
Query 702 GATAGAAGATCATCCAGACAGGCGTGTAAATCTACCAAATCATTGGGACAATCAATTGAA 761
|||||||||||||||||| |||||||| ||||||||||||| |||| |||||| ||||
Sbjct 1032 GATAGAAGATCATCCAGATAGGCGTGTGGATCTACCAAATCAGTGGGGCAATCAGCTGAA 1091
Query 762 TTGTGTTCCTAAATGTTTGTTGTCGAGTCTCGAAACGTTCTATTGGAGTGAGATGCATGG 821
|||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||
Sbjct 1092 TTGTGTTCCTAAATGTTTGTTGTCGAGTCTCGAAACGTTCAAGTGGAGTGAGATGTATGG 1151
Query 822 ATTGCTGCAGAACCAGATGGATGTGGCTAAATACATCTTGAGAAATGCTCTCTGCTTAAA 881
||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 1152 ATTGCTGCAGAACCAGATGGATGTGGCTAAATATATCTTGAGAAATGCTCGATGCTTAAA 1211
Query 882 GTCTGCGACAATCTCTTTTTC-GACAACCTATGCGCAAGAAACAATAGATGAGATGATCG 940
|||||||||||||| |||||| |||||||||||| ||||||||| ||||||||||||||
Sbjct 1212 GTCTGCGACAATCT-TTTTTCCGACAACCTATGCTAAAGAAACAAGAGATGAGATGATCG 1270
Query 941 AAGAGTTGGCACTTTCTTTTCGAGGTCCAGAAACATGCCAAGTTTTCTT 989
| |||||| |||||||||||| ||||||||| ||||||||||| |||||
Sbjct 1271 AGGAGTTGTCACTTTCTTTTCAAGGTCCAGAGACATGCCAAGTCTTCTT 1319
> AT1G55660.1 | Symbols: | FBD, F-box and Leucine Rich Repeat
domains containing protein | chr1:20800694-20802340 FORWARD
LENGTH=1479
Length=1479
Score = 1262 bits (683), Expect = 0.0
Identities = 904/1008 (90%), Gaps = 26/1008 (3%)
Strand=Plus/Plus
Query 1 AACGTCCGTGAGTTATGTCTCAAGC-TTTTATCTTTTGCGGAGCGTCCAACTAAGTTGCC 59
||||||||||||||| |||| |||| ||||| ||||||||||| ||||||||| |||||
Sbjct 472 AACGTCCGTGAGTTAAGTCTAAAGCTTTTTA-ATTTTGCGGAGCTTCCAACTAAATTGCC 530
Query 60 TAGTAGCTTGTATATCTGCAAATCGATTGTGATCTTGACACTGAAAGACGAGATTCTCGT 119
| ||||| | || |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 531 CAAAAGCTTATGTAAATGCAAATCGATTGTGATCTTGAAACTGAAAGACGAGATTCTCGT 590
Query 120 GGATGTTCCTGGTACGGTATGTCTCCCCTCCCTGAAAACGTTGTTCCTTAGACGTGTGAC 179
||||||||| ||| |||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 591 TGATGTTCCTCGTAAGGTATGTCTCCCCTCCCTGAAAACATTGTTCCTTGGACGTGTGAC 650
Query 180 TTACTCGGATGAAAATTCTCTTCACCGACTTCTTTCCAACTGCCCTGTTCTTGAGGATCT 239
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 TTACTCGGATGCAAATTCTCTTCACCGACTTCTTTCCAACTGCCCTGTTCTTGAGGATCT 710
Query 240 TGTTGTGGAAAGAGATGAAATTGACAATTTGGGAAAAGTGAGTGTGATTGTCAAGTCCTT 299
||| ||||| ||||| |||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 711 AGTTATGGAACGAGATAAAATTGACAATTTGGGGAAATTGAGTGTGATTGTCAAGTCCTT 770
Query 300 GCAGAGACTAACCCTAAAGATGTCT-GTTGCTTGTGATCTTGATGGGCTTATGATG-ATT 357
||||||||||||||||||||||||| | | ||||| ||||||||||||||| |||| |||
Sbjct 771 GCAGAGACTAACCCTAAAGATGTCTCG-TCCTTGTCATCTTGATGGGCTTAAGATGAATT 829
Query 358 ACTCCTTCTTTGAAGTATTTCAAAGTCACTGATGAAAGGCTAGACAGT-A-A-TG--G-T 411
||||||||||||||||||| ||||||| ||||||||||||||| ||| | | || | |
Sbjct 830 -CTCCTTCTTTGAAGTATTTGAAAGTCATTGATGAAAGGCTAGAGAGTGATAGTGATGAT 888
Query 412 --GA-T---AGTGATAGTCCTCGATACGCCTACTCTTTTGAAGCTATGCCTAAGTTGGAG 465
|| | |||||||||||||||||| |||| |||||||| ||||||||||||||||
Sbjct 889 GAGAGTGACAGTGATAGTCCTCGATACTTCTACGATTTTGAAGATATGCCTAAGTTGGAG 948
Query 466 GAGGCAGATTTTTTATTGACATTCCAAAATATCAAAAAGTGT-TTTAGATCATTCACATC 524
|||||||||||| ||||||||||||||||||||||||||| | ||| ||||| |||||||
Sbjct 949 GAGGCAGATTTTGTATTGACATTCCAAAATATCAAAAAGT-TCTTTGGATCAATCACATC 1007
Query 525 TGTTAAGCGGCTTTCGTTATGCTTAGGAGTCTACAAAGAAGAGTCTTTATATCATGAGGG 584
||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 1008 TGTTAAGCGTCTTTCGTTATGCTTGGGAGTCTACACCGAAGAGTCTTTATATCATGAGGG 1067
Query 585 TCTTGTTTTCAACCAGCTTGAAAC-TTTGAAGATATGTTCATGTGATTCAGATTGGTCAA 643
|||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 1068 TCTTGTCTTCAACCAGCTTG-AACAATTGAAGATATGTTCATGTGATTCAGATTGGTCAA 1126
Query 644 TTTTACTTGCTCGGTTACTCAGG-GATTCTCCTAATTTACGAGATCTCGAGACTTACGTG 702
|||||||||| || ||||||| | | |||| ||||||||||| |||||| ||||||||
Sbjct 1127 TTTTACTTGCCCGATTACTCAAAAGCT-CTCCCAATTTACGAGAGCTCGAGGCTTACGTG 1185
Query 703 ATAGAAGATCATCCAGACAGGCGTGTAAATCTACCAAATCATTGGGACAATCAATTGAAT 762
||||||||||||||| | ||||| ||||||||||||| ||||||||||| |||||
Sbjct 1186 ATAGAAGATCATCCAAATGGGCGTACGGATCTACCAAATCAGTGGGACAATCAGCTGAAT 1245
Query 763 TGTGTTCCTAAATGTTTGTTGTCGAGTCTCGAAACGTTCTATTGGAGTGAGATGCATGGA 822
|||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 1246 TGTGTTCCTACATGTTTGTTGTCCAGTCTCGAAACGTTCCGTTGGAGTGAGATGCATGGA 1305
Query 823 TTGCTGCAGAACCAGATGGATGTGGCTAAATACATCTTGAGAAATGCTCTCTGCTTAAAG 882
||||||||||||||||||||||| |||||||| ||||||| |||||||| ||||||||||
Sbjct 1306 TTGCTGCAGAACCAGATGGATGTAGCTAAATATATCTTGAAAAATGCTCGCTGCTTAAAG 1365
Query 883 TCTGCGACAATCTCTTTTTC-GACAACCTATGCGCAAGAAACAATAGATGAGATGATCGA 941
||||||||||||| |||||| |||||| ||||| |||||||||| |||||||||||||||
Sbjct 1366 TCTGCGACAATCT-TTTTTCCGACAACATATGCTCAAGAAACAAGAGATGAGATGATCGA 1424
Query 942 AGAGTTGGCACTTTCTTTTCGAGGTCCAGAAACATGCCAAGTTTTCTT 989
|||||| |||||||||||| ||||||||||||||||||||| |||||
Sbjct 1425 GGAGTTGTCACTTTCTTTTCAAGGTCCAGAAACATGCCAAGTCTTCTT 1472
> AT5G56700.1 | Symbols: | FBD / Leucine Rich Repeat domains containing
protein | chr5:22941794-22943378 FORWARD LENGTH=1166
Length=1166
Score = 150 bits (81), Expect = 2e-35
Identities = 260/343 (76%), Gaps = 25/343 (7%)
Strand=Plus/Plus
Query 55 TTGCCTAGTAGCTTGTATATCTGCAAATCGATTGTGATC-TTGACAC-TGAAAG-ACG-A 110
||||| ||||| ||||||| |||||||||| | |||| | |||| || | | | | | |
Sbjct 321 TTGCCCAGTAGTTTGTATACCTGCAAATCGCTCGTGA-CTTTGAAACTTTACGGTAAGAA 379
Query 111 GATTCTCGTGGATGTTCCTGGTACGGTATGT-CTCCCCTCCCTGAAAACGTTGTTCCTTA 169
| |||| ||||||||||| | ||||||| | ||||| ||| ||||||| ||| |||
Sbjct 380 GGTTCTTTTGGATGTTCCTCGAACGGTAT-TCCTCCCTTCCTTGAAAACTTTGCAACTT- 437
Query 170 G-ACGTGTGACTTACTCGGATGAAAATTCTCTTCACC-GACTTCTTTCCAACTGCCCTGT 227
| |||| ||| ||||| |||||| ||||||||| || | ||||| ||| ||||||||||
Sbjct 438 GAACGTTTGAGATACTCAGATGAAGATTCTCTTCGCCTG-CTTCTATCCTACTGCCCTGT 496
Query 228 TCTTGAGGATCTTG-TTGTGGAAAGAGATGAAAT-TGACAATTTGGGAAAAGTGAG-TGT 284
||| || |||| || | | | | |||| | | | |||||||||| | | || || |||
Sbjct 497 TCTGGAAGATC-TGAGTATTGTACGAGAAG-ACTATGACAATTTGAG-AGCGTTAGTTGT 553
Query 285 GATTGT-CAAGTCCTTGCAGAGACTAACCCTAAAGATGTCTGTTGCTTG-TGATCTTGAT 342
||||| | | ||||||||| | || || || |||| ||| | ||| | || ||||
Sbjct 554 TATTGTCCCA-TCCTTGCAGCGTTTATCCTTAGAGATACCTGGTAATTGTTCTTC-TGAT 611
Query 343 GGGCT-TATGATGA-TTACTCCTTCTTTGAAGTATTTCAAAGT 383
||| | | |||| | ||||||||||||||||||||||||||||
Sbjct 612 GGG-TATGTGAT-AGTTACTCCTTCTTTGAAGTATTTCAAAGT 652
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48425717708
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5