BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474628
Length=2529
Score E
Sequences producing significant alignments: (Bits) Value
AT1G55690.1 | Symbols: | Sec14p-like phosphatidylinositol tran... 3729 0.0
AT4G34580.1 | Symbols: COW1, SRH1 | Sec14p-like phosphatidylino... 115 2e-24
> AT1G55690.1 | Symbols: | Sec14p-like phosphatidylinositol transfer
family protein | chr1:20808263-20812840 REVERSE LENGTH=2607
Length=2607
Score = 3729 bits (2019), Expect = 0.0
Identities = 2415/2593 (93%), Gaps = 79/2593 (3%)
Strand=Plus/Plus
Query 1 ACACGCGAGAAACTTCAGATCTTTCCTCTCTCCGCATCTCCCTTTTTTGCATCTTCGTGT 60
|||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 24 ACACGCGAGAAATTTCAGATCTTTCCTCTCTCCGCATCTCCC-TTTTTGCATCCTCGTGT 82
Query 61 AATCATCGTagaagaagaagaagaagaagCC--TT--TTGTTACTTTACTTTCTCTGGAA 116
||||||||| ||||||||||||||||| || || ||||| |||||||||||||| ||
Sbjct 83 AATCATCGTCTAAGAAGAAGAAGAAGAATCCTTTTGCTTGTTGCTTTACTTTCTCTGCAA 142
Query 117 A-TTTCGTATCTTTGCGTGTTTTGAGAATCTTTCTACCCTTCTCGGATTTGGAGAGTTAT 175
| ||||||||||||||||| ||||||||||| |||| | |||||||||||||||||||||
Sbjct 143 ACTTTCGTATCTTTGCGTG-TTTGAGAATCTCTCTATCTTTCTCGGATTTGGAGAGTTAT 201
Query 176 CGATCGGAGAGATCGTGTCACATTAAGGGTTGAAGATAAGTCTTTAATGCAGAGAAATCG 235
||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 202 CGA----AGAGATCGTGTCACATTAAGGATTGAAGACAAGTCTTTAATGCAGAGAAATCG 257
Query 236 TGTGAAAATGGATTCTTAAGCCCCAC-TTTAGTTGCAGATCTGGAG-------C------ 281
|||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 258 TGTGAAAATGGATTCTTAAGCCCCACTTTTAGTTGCAGATCTGGAGCTTTTTACTGGGTT 317
Query 282 T-T--T--TTTATCGAGAAGAACAAAAAGAGGTTTGTTTTGTCTCATAAGTGATGGTCGT 336
| | | |||||||| ||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 318 TCTGCTAATTTATCGACAAGAACAAAAAAAGGTTTGTTTTGTCTCACAAGTGATGGTCGT 377
Query 337 ATGACTCACATGCATGTCCTCTGAGCTCGTTTAGCATCAAGAAGCTTTCCCTTTGAATTG 396
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 378 ATGACTCACATGCATGTCCTCTGAGCTCGTTTAGCATCAATAAGCTTTCCCTTTGAATTG 437
Query 397 ATATGTCAGGTGTTGAAGAAATCAGTACATTTGACGAATTTAGGGGAAGAAGATCAGACT 456
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 438 ATATGTCAGGTGTTGAAGAAATCAGTACACTTGACGAATTTAGGGAAAGAAGATCAGACT 497
Query 457 TTGAAATCTCAGAAGATGAGAGACGCCGCTCAAAAATAGGGAATTTTAAGAAGAAGGCCA 516
||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||
Sbjct 498 TTGAAATCTCAGAAGATGAGAGACGGCGCTCAAAAATAGGGAATTTGAAGAAGAAAGCCA 557
Query 517 TTAATGCTTCAACCAAGTTCACCCATTCTTTGAAGAAACGTGGGAAAAGGAAAATTGACT 576
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 558 TTAATGCTTCAACCAAGTTCACTCATTCTTTGAAGAAACGGGGGAAAAGGAAAATTGACT 617
Query 577 ATCGGATTCCTGCAGTCTCCATTGAAGATGTAAGGGATGAAAAAGAGGAGAGCGTTGTGC 636
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 618 ATCGGGTTCCTGCAGTCTCCATTGAAGATGTAAGGGATGAAAAAGAGGAGAGCGTTGTGC 677
Query 637 TTGAATTCCGCCGTAAGCTTCTTGAGAGAGACTTGTTACCTCCTAGACATGATGAGTACC 696
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 678 TTGAATTCCGCCGTAAGCTTCTTGAGAGAGATTTGTTACCTCCTAGACATGATGAGTACC 737
Query 697 ATACTCTTCTGAGGTTTTTGAAAGCTAGGGATCTTAACATTGAAAAAACCATCCAGATGT 756
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 738 ATACTCTTCTGAGGTTTTTGAAAGCTAGGGATCTTAACATTGAAAAAACCACCCAGTTGT 797
Query 757 GGGAAGAAATGCTTAGATGGAGAAAAGAGTATGGGACAGATACCATACTAGAGGATTTTG 816
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 798 GGGAAGAAATGCTTAGATGGAGAAAAGAGTATGGGACAGATACCATACTAGAGGATTTTG 857
Query 817 ATTTCGAAGAGCTTGAAGAAGTTTTGCAATACTATCCTCAAGGCTATCATGGAGTTGACA 876
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 858 ATTTCGAAGAGCTTGAAGAAGTTTTGCAATACTATCCTCAAGGCTATCATGGAGTTGATA 917
Query 877 AGGAAGGAAGACCTGTATACATTGAAAGACTTGGAAAAGCTCATCCCGCTAAGCTTATGC 936
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 918 AGGAAGGAAGACCTGTCTACATTGAAAGACTTGGAAAAGCTCATCCCTCTAAGCTTATGC 977
Query 937 GTATCACCACCATCGATAGATATTTAAAGTACCATGTGCAAGAGTTTGAGAGAGCTCTCC 996
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 978 GTATCACCACCATAGATAGATATTTAAAGTACCATGTGCAAGAGTTTGAGAGAGCTCTCC 1037
Query 997 TTGAGAAATTCCCTGCATGCTCAATTGCCGCAAAGCGCCGAATCTGTTCCACGACTACAA 1056
|||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||
Sbjct 1038 AGGAGAAATTCCCTGCATGCTCAATTGCTGCAAAGCGTCGAATCTGTTCCACAACTACAA 1097
Query 1057 TACTGGATGTGCAAGGATTGGGAATTAAGAACTTTACACCAACAGCTGCAAATCTTGTGG 1116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1098 TACTGGATGTGCAAGGATTGGGAATTAAGAACTTTACACCAACAGCTGCAAATCTTGTGG 1157
Query 1117 CTGCCATGTCGAAGATAGACAACAGCTACTACCCTGAGACGTTGCACAGAATGTACATTG 1176
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1158 CTGCCATGTCGAAGATAGACAACAGTTACTACCCTGAGACGTTGCACAGAATGTACATTG 1217
Query 1177 TAAATGCTGGAACAGGTTTCAAAAAGATGCTTTGGCCTGCTGCTCAGAAGTTTCTTGATG 1236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1218 TAAATGCTGGAACAGGTTTCAAAAAGATGCTTTGGCCTGCTGCTCAGAAGTTTCTTGATG 1277
Query 1237 CAAAGACCATTGCAAAGATACATGTGCTAGAACCCAAATCTTTATTTAAGTTACATGAAG 1296
|||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||
Sbjct 1278 CAAAGACCATTGCAAAGATACACGTGCTAGAGCCCAAATCTCTATTTAAGTTACATGAAG 1337
Query 1297 TCATTGATTCAAGTCAATTGCCAGAATTCCTTGGAGGTTCATGCTTTTGCTTTGGTGATG 1356
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1338 TCATTGATTCAAGTCAATTGCCAGAATTCCTTGGAGGTTCATGCTCTTGCTTTGGTGATG 1397
Query 1357 GAGGAGGGTGTCTTCGCTCAAATAAAGGACCCTGGAATGATCCTGAAATAATGAAGCTCA 1416
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1398 GAGGAGGGTGTCTTCGCTCTAATAAAGGACCCTGGAATGATCCTGAAATAATGAAGCTCA 1457
Query 1417 TCTACCATGGCGAATCATCACATTTTCGGCAAATG-ACCAGGAAGCTAAGTGACCTGCAT 1475
|||||||||| |||||||||| |||| |||||| | ||||| ||||| | ||||| ||||
Sbjct 1458 TCTACCATGGAGAATCATCACTTTTTAGGCAAA-GCACCAGAAAGCTGACTGACCCGCAT 1516
Query 1476 AATTCTTCATCCTACATTAGTATACATCCATCGAAGGCTATACAAGCTGAGACTTCAGCA 1535
||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1517 TATTCTTCTTCCTACATAAGTATACATCCATCAAAGGCTATACAAGCTGAGACTTCAGCA 1576
Query 1536 GCAGAGTCGGTATCTTGTTCTGATGTTCCTACTTCTCCAACTGGAAGATTATGCTCAGCC 1595
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1577 GCAGAGTCGATATCTTGTTCTGATGTTCCTTCTTCTCCAACTGGAAGATTATGCTCAGCC 1636
Query 1596 TCTGCTCATGTGAATTCAGCTTATGAGGAAGCTAGGGCATCAGATGTTAATGGCTATTAT 1655
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1637 TCTTCTCATGTGAATTCAGCTTATGAGGAAGCTAGGGCATCAGATGTTAATGGCTATTAT 1696
Query 1656 AGTTGCGATGACAAGTTTGCCATACCTGACAAAGCTACTAACAGAAAAAACCAAGAAAGG 1715
|||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1697 AGTTGCGACGACAAGTTTGCCATACCTGACAAAGCTACTAACCGAAAAGGCCAAGAAAGG 1756
Query 1716 CAATCCCTTTACCAAATGCCCGAACTCAAT-CAAACTACTCTCGGTTTAAAATGTGAAAC 1774
||||||| |||||||||| ||||| ||| ||| | ||| |||||||||||||||||||
Sbjct 1757 CAATCCCAATACCAAATGCGTGAACTTAATGCAA-CAACTATCGGTTTAAAATGTGAAAC 1815
Query 1775 ATCTCCACCAGGTGCTCCCATCATCCGTTGGCTTCATGATTTAAGGGGAACCATTGACAA 1834
|||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1816 ATCTTCACCAGGTGCTCCCATCATCCGTTGGCTTCATGATTTAAGGGTAATGATTGACAA 1875
Query 1835 GATAAAATGTGAGAACCTAGCGAAAAGGCTACTTTCTTTAATGCTGAAACTAGCTGCAGT 1894
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1876 GATAAAATGTGAGAACCTAGCGAAAAGACTACTTTCGTTAATGCTGAAACTAGCTGCAGT 1935
Query 1895 TTTCCGTTATACTCCGCTTGAGCTTCTGAGAAGCCAGACTACAGTCAGCCCTTCAAGTCC 1954
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1936 TTTTCGTTATACTCCGCTTGAGCTTCTGAGAAGCCAGACTACAGTCAGCCCTTCAAGTCT 1995
Query 1955 AACAGAAGATGACAGTAGGTGTAGCTTCATCTCAGC---TCCTAGAGAGCCCACAATGAA 2011
|||||||||||||||| |||| ||| |||||||| | |||||||||||||||||||||
Sbjct 1996 AACAGAAGATGACAGTCGGTGCAGCCTCATCTCACCACCTCCTAGAGAGCCCACAATGAA 2055
Query 2012 AGACCGGATTCTTCCATGTTTGGAGCGTATTCAGGAACTGGAGAAATGTTATGAGAATAT 2071
|||||||||||||||||||||||| ||||||||| ||||||||||| |||||||| ||||
Sbjct 2056 AGACCGGATTCTTCCATGTTTGGAACGTATTCAGAAACTGGAGAAAAGTTATGAGGATAT 2115
Query 2072 TCGGAACAAACCCGTCTCCA-TACCTGTAGAGAAGGAGAGAATGTTGATGGATTCTTTAG 2130
||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||
Sbjct 2116 TCGGAACAAACCCGT-TGCAATACCTGTAGAGAAGGAGAGAATGTTGATGGATTCTTTAG 2174
Query 2131 ACAGAATCAAGTCAGTTGAGTTTGATCTCGACAAAACAAAGAGGCTTTTACACGCCACGG 2190
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2175 ATAGAATCAAGTCAGTTGAGTTTGATCTCGACAAAACAAAGAGGCTTTTACACGCCACGG 2234
Query 2191 TGATGAAACAAATGGAAATAACTGAAATGCTGCAAAATTTACGAGATTCCCAACTTCATA 2250
|||||||||| ||||| ||||||||||||||||||||| ||||||| ||||||||||| |
Sbjct 2235 TGATGAAACAGATGGAGATAACTGAAATGCTGCAAAATATACGAGACTCCCAACTTCACA 2294
Query 2251 GAAGAAGAAGATTGTTCTGTTAA-AAACCATAAGAGAACATCTGAGTTTTGCATAAATAC 2309
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2295 GAAGAAGAAGATTGTTCTGTTAATAAACCATAAGAGAACATCTGAGTTTTGCATAAATAC 2354
Query 2310 AAATCTGCACATACagagagagagagaga-AGCG--GAAA-CAAAACACACATAGGTCCC 2365
||||||||||||||||||| ||||||||| || |||| ||||| ||| | | ||||
Sbjct 2355 AAATCTGCACATACAGAGAAAGAGAGAGAGAGAATTGAAAACAAAAGACA--T-G-TCCC 2410
Query 2366 TCTGCTTCCACTTTTTAAGTTATaaaaagaagaagaagaaga-ag--a-a-a-aaa---T 2416
| |||||||||||||||||||||||||||||||||||||||| || | | | ||| |
Sbjct 2411 TATGCTTCCACTTTTTAAGTTATAAAAAGAAGAAGAAGAAGATAGTGACAGAGAAAGACT 2470
Query 2417 CTGATGATCAATCCTGTCTTTGACAATTATAGATTGAGAGA-A--A---T--------CC 2462
||||||||||||||||||| ||| |||| |||||||||||| | | | ||
Sbjct 2471 CTGATGATCAATCCTGTCTGTGATAATT-TAGATTGAGAGAGATCAGAATTTTAAAAACC 2529
Query 2463 ---T--TTT-GTTCTAATCGGTGTAGATAAGAAAACTACACTAAGCTAAACAAATGAGAT 2516
| ||| ||| ||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 2530 AAATCCTTTTGTTGTAATCAGTGTAGATAAGAAA-CTACACTAAGCTAAACAAATGAGAT 2588
Query 2517 TTTGTAAATCTTT 2529
|||||||||||||
Sbjct 2589 TTTGTAAATCTTT 2601
> AT4G34580.1 | Symbols: COW1, SRH1 | Sec14p-like phosphatidylinositol
transfer family protein | chr4:16515327-16519534 FORWARD
LENGTH=2767
Length=2767
Score = 115 bits (62), Expect = 2e-24
Identities = 89/102 (87%), Gaps = 2/102 (2%)
Strand=Plus/Plus
Query 807 GAGGATTTTGATTTCGAAGAGCTTGAAGAAGTTTTGCAA-TACTATCCTCAAGGCTATCA 865
|||||||||||||||||||| |||| ||||| || || |||| ||||||||||||||
Sbjct 465 GAGGATTTTGATTTCGAAGAAATTGATGAAGTGATG-AAGCACTACCCTCAAGGCTATCA 523
Query 866 TGGAGTTGACAAGGAAGGAAGACCTGTATACATTGAAAGACT 907
|||||||||||||||||| ||||| || |||||||| |||||
Sbjct 524 TGGAGTTGACAAGGAAGGCAGACCAGTTTACATTGAGAGACT 565
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 125517691386
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5