BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg474640 Length=408 Score E Sequences producing significant alignments: (Bits) Value AT1G55790.1 | Symbols: | Domain of unknown function (DUF2431) ... 544 3e-154 > AT1G55790.1 | Symbols: | Domain of unknown function (DUF2431) | chr1:20852324-20856122 REVERSE LENGTH=1769 Length=1769 Score = 544 bits (294), Expect = 3e-154 Identities = 372/409 (91%), Gaps = 8/409 (2%) Strand=Plus/Plus Query 1 ATGGATGTAAGTGACAGTGAGAAATCTATaaaaaaaGCTATGAAAATCGCATCTACAAAA 60 |||||| | |||| | |||||||||||| || ||||||||||| ||||||||| ||||| Sbjct 1200 ATGGATATGAGTG--A-TGAGAAATCTATGAAGAAAGCTATGAAGATCGCATCTGCAAAA 1256 Query 61 TCTGGTGTTAGATCGGTCTCGATTCAGGGGCAGAACGATCAGTTGGTTTTATTGGGAGAA 120 ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1257 CCTGGTGTGAGATCGGTCTCGATTCAGGGACAGAACGATCAGTTGGTTTTATTGGGAGAA 1316 Query 121 GGGATTGACTTAGCGGAGCTAACACGTGAGCTCAAGAAGAAAGTTTGCCA-CACGACTAT 179 |||||||||||||| ||||||||||||||||| |||||||||||||| || |||||||| Sbjct 1317 GGGATTGACTTAGCCGAGCTAACACGTGAGCTTAAGAAGAAAGTTTG-CATGACGACTAT 1375 Query 180 CATCACCGTTCAGGCGGCGCCGCCGCAGCAGCCACCACCTCAGCCTCATCAAATGGGCCA 239 ||||||||||||||| ||||| ||||||||| ||||| || ||||||| |||||||| Sbjct 1376 CATCACCGTTCAGGCTGCGCCACCGCAGCAG---CCACCGCAACCTCATCCTATGGGCCA 1432 Query 240 ATATAACCAGATGCCTCCGGCGAGAAGATGTACCTGTGAGATACCTAATTCAGGTTTCTG 299 || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1433 GTACAACCAGATGCCTCCGGCGAGAAGATGTACCTGTGAGATACCGAATTCAGGTTTCTG 1492 Query 300 CGGATTATGTAGTTCTATGAGTCAACACAATTATCAGGTGGTACCATCGCCGTATTATCC 359 |||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1493 CGGATTTTGTAGATCTATGAGTCAACCCAATTATCAGGTGGTACCATCGCCGTATTATCC 1552 Query 360 TCCGGTGCTCTATTGTCGTGATGAGTCCGATGGTTGTAGAATTTTGTGA 408 ||| ||||||||||||| |||||| ||||||| ||||||||||||||| Sbjct 1553 CCCGATGCTCTATTGTCGAGATGAGACCGATGGCTGTAGAATTTTGTGA 1601 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19302815616 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5