BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg474640

Length=408
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G55790.1 | Symbols:  | Domain of unknown function (DUF2431) ...   544    3e-154


> AT1G55790.1 | Symbols:  | Domain of unknown function (DUF2431) 
| chr1:20852324-20856122 REVERSE LENGTH=1769
Length=1769

 Score =  544 bits (294),  Expect = 3e-154
 Identities = 372/409 (91%), Gaps = 8/409 (2%)
 Strand=Plus/Plus

Query  1     ATGGATGTAAGTGACAGTGAGAAATCTATaaaaaaaGCTATGAAAATCGCATCTACAAAA  60
             |||||| | ||||  | |||||||||||| || ||||||||||| ||||||||| |||||
Sbjct  1200  ATGGATATGAGTG--A-TGAGAAATCTATGAAGAAAGCTATGAAGATCGCATCTGCAAAA  1256

Query  61    TCTGGTGTTAGATCGGTCTCGATTCAGGGGCAGAACGATCAGTTGGTTTTATTGGGAGAA  120
              ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  1257  CCTGGTGTGAGATCGGTCTCGATTCAGGGACAGAACGATCAGTTGGTTTTATTGGGAGAA  1316

Query  121   GGGATTGACTTAGCGGAGCTAACACGTGAGCTCAAGAAGAAAGTTTGCCA-CACGACTAT  179
             |||||||||||||| ||||||||||||||||| |||||||||||||| ||  ||||||||
Sbjct  1317  GGGATTGACTTAGCCGAGCTAACACGTGAGCTTAAGAAGAAAGTTTG-CATGACGACTAT  1375

Query  180   CATCACCGTTCAGGCGGCGCCGCCGCAGCAGCCACCACCTCAGCCTCATCAAATGGGCCA  239
             ||||||||||||||| ||||| |||||||||   ||||| || |||||||  ||||||||
Sbjct  1376  CATCACCGTTCAGGCTGCGCCACCGCAGCAG---CCACCGCAACCTCATCCTATGGGCCA  1432

Query  240   ATATAACCAGATGCCTCCGGCGAGAAGATGTACCTGTGAGATACCTAATTCAGGTTTCTG  299
              || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  1433  GTACAACCAGATGCCTCCGGCGAGAAGATGTACCTGTGAGATACCGAATTCAGGTTTCTG  1492

Query  300   CGGATTATGTAGTTCTATGAGTCAACACAATTATCAGGTGGTACCATCGCCGTATTATCC  359
             |||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  1493  CGGATTTTGTAGATCTATGAGTCAACCCAATTATCAGGTGGTACCATCGCCGTATTATCC  1552

Query  360   TCCGGTGCTCTATTGTCGTGATGAGTCCGATGGTTGTAGAATTTTGTGA  408
              ||| ||||||||||||| |||||| ||||||| |||||||||||||||
Sbjct  1553  CCCGATGCTCTATTGTCGAGATGAGACCGATGGCTGTAGAATTTTGTGA  1601



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19302815616


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5