BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474658
Length=1261
Score E
Sequences producing significant alignments: (Bits) Value
AT1G55890.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 1797 0.0
> AT1G55890.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:20901346-20902800 FORWARD LENGTH=1455
Length=1455
Score = 1797 bits (973), Expect = 0.0
Identities = 1157/1244 (93%), Gaps = 19/1244 (2%)
Strand=Plus/Plus
Query 1 GCTCTCAGTCCCAAAACGATGTCGTCTCTATCTCGCGTTCTCCGTGGCACCTTCAACA-T 59
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 GCTCTCACTCCCAAAACGATGTCGTCTCTATCTCGCGTTCTCCGTGGCACCTTCAACACT 60
Query 60 TTCCACGATCCGCCGTTTTTCCTCCGCCGCCACC--A---T---AA-CGACGGCAGTCAG 110
| || ||||||||||||||||||||||||||||| | | || | || |||||||
Sbjct 61 TGCC-CGATCCGCCGTTTTTCCTCCGCCGCCACCGTAGTCTCCGAACCCACCGCAGTCAC 119
Query 111 TGCCGCAATCTCGCCACCTCAAAATTCACTTACCAGTATCGTAAATGGCGAACGAAACCC 170
||||||||||||||| |||||||| ||||| |||||| |||| |||||||||||||||||
Sbjct 120 TGCCGCAATCTCGCCTCCTCAAAAGTCACTAACCAGTCTCGTGAATGGCGAACGAAACCC 179
Query 171 ACAAA-GGATCGTTGAGAAGTTCAAGAAGGCATGTGAGTCGGAGCGGTTCCGGAATAACA 229
|||| ||||||| ||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 180 -CAAACGGATCGTGGAGAAATTCAAGAAGGCATGTGAGTCGGAGCGGTTCCGGACCAACA 238
Query 230 TAGCCGTTTACGATAGAACCGTGCGCCGTCTCGTCGCAGCAAAGAGATTACACTTTGTCG 289
||||||| |||||||||||||||||||||||||| || |||||||||||||||| |||||
Sbjct 239 TAGCCGTGTACGATAGAACCGTGCGCCGTCTCGTAGCCGCAAAGAGATTACACTATGTCG 298
Query 290 AAGAGATTTTGGAGGAGCAGAAGAAGTACCGCGACATGTCAAAAGAGGGATTCGCGGCGA 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 AAGAGATTTTGGAGGAGCAGAAGAAGTACCGCGACATGTCAAAAGAGGGATTCGCGGCGA 358
Query 350 GGATCATTTCTCTGTATGGAAAAGCCGGCATGTTTGAAAATGCCCAGAAGGTGTTCGACG 409
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 359 GGATCATTTCTCTGTATGGAAAAGCCGGCATGTTTGAAAATGCACAGAAGGTGTTCGAAG 418
Query 410 AAATGCCTGATAGAAACTGCAAAAGGTCAGTCTTGTCCTTCAATGCCTTGCTTAGTGCAT 469
||||||| | ||| ||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 419 AAATGCCAAACAGAGACTGCAAGAGGTCAGTGTTGTCCTTCAATGCCTTGCTTAGTGCAT 478
Query 470 ATGGGCTTTCCAAGAAATTCGATGTGGTTGA-GCAACTTTTCAATGAGTTACCGGGGAAG 528
|| | |||||||||||||||||||||||||| | ||||||||||||||||||| || |||
Sbjct 479 ATAGACTTTCCAAGAAATTCGATGTGGTTGAAG-AACTTTTCAATGAGTTACCTGGAAAG 537
Query 529 TTATCAATCAAACCAGATATTGTATCTTACAATACTTTGATCAAGGCATTGTGTGAGAAG 588
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 538 TTATCAATCAAACCAGATATTGTATCTTACAATACTTTGATTAAGGCATTGTGTGAGAAG 597
Query 589 GATTCTTTACCTGAAGCTGTTGCATTACTTGATGAGATTGAGAACAAAGGTTTGAAACCT 648
|||||||||||||||||||||||||| |||||||||||||||||||| || | ||||||
Sbjct 598 GATTCTTTACCTGAAGCTGTTGCATTGCTTGATGAGATTGAGAACAAGGGACTAAAACCT 657
Query 649 GATATAGTCACATTCAACACACTTTTACTGTCGTCGTATTTGAAGGGACAGTTTGAGCTA 708
|||||||| ||||||||||||||||||||||| |||||| | ||||||||||||||||||
Sbjct 658 GATATAGTTACATTCAACACACTTTTACTGTCTTCGTATCTAAAGGGACAGTTTGAGCTA 717
Query 709 GGGGAAGAGATATGGGCTAAATTGGTGGAGAAGAATGTACCGATAGACATCAGGACTTAT 768
||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||
Sbjct 718 GGGGAAGAGATATGGGCTAAAATGGTGGAGAAGAATGTAGCAATAGACATCAGGACTTAC 777
Query 769 AATGCTCGGTTGCTTGGATTAGCCAGCGAGGTGAAATCAAAAGAGCTGGTAAGTCTCTTT 828
|||||| || ||||||||||||||| |||| |||||| |||||||| |||| |||||||
Sbjct 778 AATGCTAGGCTGCTTGGATTAGCCAATGAGGCGAAATCGAAAGAGCTAGTAAATCTCTTT 837
Query 829 GAAGAACTGAAAGCTAGTGGGATCAAACCTGATGTTTTCAGCTTCAATGCTATGATTAGA 888
| |||||| || ||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 838 GGAGAACTTAAGGCTAGTGGGCTCAAACCTGATGTTTTCAGTTTCAATGCTATGATTAGA 897
Query 889 GGATCTATCAACCATGGAAAAATGGACGAAGCTGAATCATGGTACAAAGAAATAGTGAAG 948
|||||||||||| | ||||||||||||||||||||| | |||||||||||||| ||||||
Sbjct 898 GGATCTATCAACGAAGGAAAAATGGACGAAGCTGAAGCGTGGTACAAAGAAATTGTGAAG 957
Query 949 CACGGTTATCGTCCTGATAAAGCTACCTTTGCTTTATTGCTTCCTGCAATGTGTAAAGCA 1008
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 958 CATGGTTATCGTCCTGATAAAGCTACCTTTGCTTTATTGCTTCCTGCTATGTGTAAAGCA 1017
Query 1009 GGTGACTTTGAGTCTGCGATTGAGCTCTTCAAGGAGACATTCAGTAAGCGGTATCTTGTG 1068
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 GGTGACTTTGAGTCTGCGATTGAGCTCTTCAAGGAGACATTCAGTAAGCGGTATCTTGTC 1077
Query 1069 GGTCAAACAACGTTGCAGCAGTTAGTTGATGAATTGGTGAAAGGGTCCAAGAGAGAAGAA 1128
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1078 GGTCAAACAACGTTGCAGCAGTTAGTTGATGAATTGGTGAAAGGGTCTAAGAGAGAAGAA 1137
Query 1129 GCTGAGGAGATTGTGGAGATTGCAAAGACCAATGATTTCTTAAAGTTGAAGCTAATTTTG 1188
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1138 GCTGAGGAGATTGTGAAGATTGCAAAGACCAATGATTTCTTAAAGTTGAAGCTAAATTTG 1197
Query 1189 CCGTCCCAGGAAGAGTAAGTGGTTCATTTGCTACTCTCTCACTA 1232
|||||||||||||||||||| ||||||||||||||||||||
Sbjct 1198 CCGTCCCAGGAAGAGTAAGT----CATTTGCTACTCTCTCACTA 1237
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61997673075
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5