BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474659
Length=1459
Score E
Sequences producing significant alignments: (Bits) Value
AT1G55900.1 | Symbols: TIM50, emb1860 | Haloacid dehalogenase-l... 2198 0.0
> AT1G55900.1 | Symbols: TIM50, emb1860 | Haloacid dehalogenase-like
hydrolase (HAD) superfamily protein | chr1:20903068-20905728
FORWARD LENGTH=1534
Length=1534
Score = 2198 bits (1190), Expect = 0.0
Identities = 1351/1428 (95%), Gaps = 13/1428 (1%)
Strand=Plus/Plus
Query 38 AGAAAACGCCGAAATCGGAAATGGCGTCTATTGTTCTTCGATCTCGCCTGTTGCCAAGAT 97
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 76 AGAAAACGCCGAAATCGGAAATGGCGTCTATTGTTCTTCGATCTCGCCTGTTGCCAAGAT 135
Query 98 TAACAAACCTCAGATCTCGTAATCTGAGATGTTTCTCTGCGGAAGCATCTTCTTCCAATT 157
|| |||| |||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 136 TAGCAAAGCTCAGATCTCGTAATCTGAGATGTTTCTCTGCGGAAGCATCTTCGACGAATT 195
Query 158 CTTCATCTAGGTATCCGGGAGTCACCTCTACCCAGTCGATGTTTTCTGATTTTCCACCGC 217
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 196 CTACATCTAGGTATTCGGGAGTCACCTCTACCCAGTCGATGTTTTCTGATTTTCCACCGC 255
Query 218 CAAATCAGCCGCCAcctcctcctcctcctccGGTGGAAGCTGCGGCCGCGGCAGCGACGG 277
|||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||
Sbjct 256 CAAATCAGCCGCCACCTCCTCCTCCTCCTCAAGTGGAAGCTGCTGCCGCGGCTGCGACGG 315
Query 278 GGAAGGAGCGAAAAGGTCTTAAGTATCTTGGTTACACACTCCTCTGGGCACTCACTGGTG 337
| |||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 316 GAAAGGAGAGGAAAGGTCTTAAGTATCTTGGTTACGCACTCCTCTGGGCACTCACTGGTG 375
Query 338 CTACCGCTGCTACTGGTTACGCAAGTTATGCTTACACGATAGATGAAGTGAATGAAAAGA 397
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 376 CTACCGCTGCTACTGGTTACGCAAGTTTTGCTTACACGATAGATGAAGTGAATGAAAAGA 435
Query 398 CTAAGGCGTTCCGAGAATCAGCTAAGAAGACACCAGTTATTAAGTCTTCTGGCATTGATG 457
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 436 CTAAGGCGTTCCGAGAATCAGCTACGAAGACACCAGTTATTAAATCTTCTGGCATTGATG 495
Query 458 TGATTGATAAATATCAAACTAAGTTGTATTCTGCTGCGTTGACAGGTTCTGCTAAAGCCA 517
|||||||||||||||| ||||||||||| |||||||| ||||||||||||||| |||||
Sbjct 496 TGATTGATAAATATCAGACTAAGTTGTACTCTGCTGCAATGACAGGTTCTGCTAGAGCCA 555
Query 518 TTGATAAGTATTTGGAGCTTAGGGAAATTGTGGAGGAACAAGTGAAAGGCTTCACGGAAC 577
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 556 TTGATAAGTATTTAGAGCTTAGGGAAATTGTGGAGGAACAAGTGAAAGGCTTCACGGAAC 615
Query 578 CTCTTTCGGAAAAGCTTCTTCCGGATCTGCACCCCTCAGAACAGCATGTCTTCACTCTAG 637
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 616 CTCTCTCGGAAAAGCTTCTTCCGGATCTGCACCCCGCAGAACAGCATGTCTTCACTCTAG 675
Query 638 TTCTTGATTTGAATGAGACACTGCTTTACACTGACTGGAAGCGAGAAAGAGGGTGGAGGA 697
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 676 TTCTTGATTTAAATGAGACACTGCTTTACACTGACTGGAAGCGGGAAAGAGGGTGGAGGA 735
Query 698 CATTCAAAAGACCAGGTGTCGATGCGTTCTTGGAGCATCTTGGCAAATTCTATGAGATTG 757
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 736 CATTCAAAAGACCAGGTGTCGATGCATTCTTGGAGCATCTTGGGAAATTCTATGAGATTG 795
Query 758 TCGTGTATTCTGACCAGATGGATATGTACGTACTTCCGGTCTGCGAGAAATTAGACCCAA 817
|||||||||||||||||||||| ||||| ||||| |||||||| ||||||||||||||||
Sbjct 796 TCGTGTATTCTGACCAGATGGAGATGTATGTACTCCCGGTCTGTGAGAAATTAGACCCAA 855
Query 818 ATAACTACATACGTTATAGGCTAGGAAGAGGCGCTACTAAATATGAAAATGGAAAGCACT 877
|| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 856 ATGGCTACATACGTTATAAGCTAGCAAGAGGCGCTACTAAATATGAAAATGGAAAGCACT 915
Query 878 ATAGGGATCTGTCAAAGCTGAACAGAGATCC-AAGGAAGATTCTGTTTGTTAGCGCAAAC 936
||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 916 ATAGGGATCTGTCAAAGCTGAACAGAGATCCGAAG-AAGATTCTGTTTGTTAGCGCAAAT 974
Query 937 GCCTTTGAATCAACCCTTCAGCCAGAAAATAGCGTGCCAATCAAGCCTTACAAACTAGAA 996
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 975 GCCTTTGAATCAACCCTTCAGCCAGAAAATAGCGTGCCAATCAAGCCTTACAAACTAGAA 1034
Query 997 GCTGATGACACGGCTCTAGTTGACCTGATACCCTTCCTTGAATATGTTGCACGTAACAGT 1056
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1035 GCTGATGACACAGCCCTAGTTGACCTGATACCCTTCCTTGAATATGTTGCACGTAACAGT 1094
Query 1057 CCAGCGGACATCAGACCGGTTCTGGCCTCTTTCGAGAGAAAAGATGTTGCCAAAGAGTTC 1116
||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 1095 CCAGCAGACATCAGACCGGTTCTGGCCTCTTTTGAGAGAAAAGATATTGCCAAAGAGTTC 1154
Query 1117 ATTGACAGGTCCATAGAGTATCAAAAGCGAAAGCAACAACAACAGGGACAAGGCCGATTC 1176
|||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||
Sbjct 1155 ATTGACAGGTCCATAGAGTATCAAAAGCGAAAGCAAGGACAACTGGGACAAGGTCGATTC 1214
Query 1177 TGGAGGCGTTAAAGGATCTAATATTTATGTATAG--CGAGAGACAATTATATCATCATTG 1234
||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 1215 TGGAGGCGTTAAAGGATCTAAGATTTATGTATAGAGCGAGAGACAATTATATCATCATTG 1274
Query 1235 ATGCTGCACACCATAAATTAGGAACATGAGCTACCGTTCTTCGCTATGGATTT-TTAGGT 1293
||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1275 ATGGTGCACACCATAAAATAGGAACATGAGCTACCGTTCTTCGCTATGGATTTATTAGGT 1334
Query 1294 AAAATTTGAATTAAAATGGTGTCTTTCTCGTCAAAGAGTTGTTATGTTTACCCAATTTTC 1353
||||| |||||||||| ||||||| || |||||||||| ||||||| |||||||||||
Sbjct 1335 AAAATCCGAATTAAAATACTGTCTTTGTCATCAAAGAGTTTTTATGTT-ACCCAATTTTC 1393
Query 1354 CT-GTTCTCTTCTCTCTGCTATACATAGAAAATTTTTCTATGAGAACTAAAAAGAAAAAT 1412
|| || || ||||||||||| |||||||||||||| |||||||||| ||||||||| |
Sbjct 1394 CTCGT-CT-TTCTCTCTGCTTTACATAGAAAATTT--CTATGAGAACGAAAAAGAAAT-T 1448
Query 1413 ATCATATGGAAGGTTCATTTTTCGCTGTCTAACAAATACA-ttttttt 1459
|||||||||||||||||||||||| || ||||||||||| |||||||
Sbjct 1449 ATCATATGGAAGGTTCATTTTTCGTTGACTAACAAATACCGTTTTTTT 1496
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71937380985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5