BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474661
Length=1314
Score E
Sequences producing significant alignments: (Bits) Value
AT1G55915.1 | Symbols: | zinc ion binding | chr1:20907547-2090... 2021 0.0
> AT1G55915.1 | Symbols: | zinc ion binding | chr1:20907547-20909638
FORWARD LENGTH=1540
Length=1540
Score = 2021 bits (1094), Expect = 0.0
Identities = 1250/1325 (94%), Gaps = 12/1325 (1%)
Strand=Plus/Plus
Query 1 TTTCAAAATCCCATTTTTGTTGCATCGAAGATCGGGAAGGTCAGAAATGTTTGTGTTTTT 60
|||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 11 TTTCAAAATCCCTTTTTTGTTGCATCGAAGATCGGGAAGGTCAGAATTGTTTGGGTTTTT 70
Query 61 GAATCGAA-TTTGAGATTTTTGAAGGTGGGCATCTGTGAAA-T-TG-TGA--T----GAA 110
|||||||| |||||||| ||||||||||||||||||||||| | || ||| | |||
Sbjct 71 GAATCGAATTTTGAGATATTTGAAGGTGGGCATCTGTGAAATTGTGATGAGTTCGGCGAA 130
Query 111 TTTGGGAGATTTGAACAAGGTCTGGGAAATAAAGGCTTTGAAGAAGAAACCTAGAGAAGA 170
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 131 TTTGGAAGATTTGAACAAGGTCTGGGAAATAAAGGCTTTGAAGAGGAAACCTAGAGAAGA 190
Query 171 TGAAGCGAGGAAGATTCTGGAGAAGGTAGCTAATCAGGTTCAGCCGATTATGACTAGACG 230
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 191 TGAAGCGAGGAAGATTCTGGAGAAAGTAGCTAATCAGGTTCAGCCGATTATGACTAGACG 250
Query 231 AAAATGGCGTGTCAAGCTTCTCTCTGAATTCTGCCCAAAAAATCCAATGCTTTTAGGGGT 290
||||||||| |||||||||||||||||||||||||||| |||||||| |||||| |||||
Sbjct 251 AAAATGGCGCGTCAAGCTTCTCTCTGAATTCTGCCCAACAAATCCAAGGCTTTTGGGGGT 310
Query 291 GAATGTAAATAGAGGCGTGCAAGTGAAATTGAGGCTTCGAAGGGTAAACCATGATGGAGA 350
||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||
Sbjct 311 GAATGTAAATAGAGGCGTGCAAGTGAAATTGAGGCTTAGGAGGGTAAACCATGATTTAGA 370
Query 351 ATTCTTATCGTATCATGAAATTCTCGACACCATGCTCCACGAGCTTTGCCACAATGCGCA 410
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 371 TTTCTTATCGTATCATGAAATTCTCGACACCATGCTCCACGAGCTTTGCCACAACGCTCA 430
Query 411 TGGTCCTCACAATGCAAATTTCTATAAGCTTTGGGATGAACTTCGAAAGGAATGCGAGGA 470
||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 431 TGGTCCTCATAACGCAAGTTTCTATAAGCTTTGGGATGAACTTCGAAAGGAATGCGAGGA 490
Query 471 GTTGATGTCAAAGGGTATAACAGGGACAGGACAGGGATTTGATATTCCTGGGCAGCGTTT 530
|||||||||||||||||| |||||||| ||||||||||||||||| ||||| |||||||
Sbjct 491 GTTGATGTCAAAGGGTATTACAGGGACGGGACAGGGATTTGATATGCCTGGTAAGCGTTT 550
Query 531 GGGTGGACTTTCTCGTCAGCCTCCTCTATCATCTCTCCGAGCAACTGCAGCTACAGCAGC 590
|||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||
Sbjct 551 GGGTGGACTTTCTCGTCAGCCTTCTCTATCATTTCTCAGAGCAACTGCAGCTACAGCAGC 610
Query 591 AGAAAAAAGAGTGCGTGCGGGAACTCTTTTACCTTCAGGACCTCATCGTCTTGGTGGTGA 650
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 611 AGAAAAAAGAGTGCGTGCGGGAACTCTTTTACCTTCAGGACCTCAACGTCTTGGTGGTGA 670
Query 651 TAGCAGCATTATGTCAGATCTTAGTCCAATTCAGGCTGCTGCAATGGCTGCAGAAAGGCG 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 671 TAGCAGCATTATGTCAGATCTTAGTCCAATTCAGGCTGCTGCAATGGCTGCAGAAAGGCG 730
Query 711 TTTACTTGATGATATTTGGTGTGGTTCCCAATCCACAGAGGCTTTAGAAGACGAAGAGAG 770
||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 731 TTTACTTGATGATATTTGGTGTGGTTCCCAATCCACAGATGCTTTAGAAGATGAAGAGAA 790
Query 771 TGATAGTGACACATGTAAGGAACCCGTTTCCATCAGGGAAACTTGTATGAGCATGAATGC 830
|||||||||||||| ||||||||| |||||||||||||||||||||| |||| ||||||
Sbjct 791 TGATAGTGACACATATAAGGAACCTGTTTCCATCAGGGAAACTTGTACGAGCGTGAATGG 850
Query 831 TAAGTCTGTAAAAAGATGTAATAGCTTGTCCAATGCCAATTCTTGCCCTCCATCTTCCAG 890
||||| |||||| |||||||||||| |||||||||| ||||||| ||||||||||||||
Sbjct 851 AAAGTCAGTAAAACGATGTAATAGCTGGTCCAATGCCCATTCTTGTCCTCCATCTTCCAG 910
Query 891 TCTTCAAGGGGGATCAGACGTCATTGATTTGACTGAGGAATCTTTTGAACCAAGATGTGC 950
|| |||| ||||||||| ||||||||||||||||| |||||||||||| ||||||| |
Sbjct 911 TCATCAACAGGGATCAGATGTCATTGATTTGACTGAAGAATCTTTTGAAATAAGATGTAC 970
Query 951 TAAAAGAAACT-GCAGCCCAGGTGATCAGGGTCCTTCTTGTGCCAAAGATGTACCGAACT 1009
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 971 TAAAAGAAA-TCGCAGCCCAGGTGATCAGGGTCCTTCTTGTGCCAAAGATGTACCGAACG 1029
Query 1010 CTGGTTTCACGAAGTCATCGATTACTTTGCCATCGACGAGTTACAATGCAAACCAAAGCA 1069
||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1030 CTGGTGTCATGAAGTCATCGATTCCTTTGCCATCGACGAGTTACAATGCAAACCAAAGCA 1089
Query 1070 GAGAAGAATCCACAATGTGGGAGTGTGCAGAATGCACCTTATTGAACCCCTCATTGGCTC 1129
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1090 GAGAAGAATCCACAATGTGGGAGTGTGCAGAATGCACCTTATTGAACCCGTCATTGGCTC 1149
Query 1130 CAATATGTGAGCTATGCACTGCCACAAAGCCAAAGGAAAAGGAGATGAAGCACAAAGTCT 1189
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 1150 CAATATGTGAGCTATGCACTGCCGCAAAGCCAAAGGAAAGGGAGATGAAGCACAAAGTCT 1209
Query 1190 GGTCTTGCAAATTCTGCACGCTTGAAAACGAGGTGAAGTTAGAGAAATGTGAGGCGTGTG 1249
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1210 GGTCTTGCAAATTCTGCACGCTTGAAAATGAGGTGAAGTTAGAGAAATGTGAGGCTTGTG 1269
Query 1250 GTCAGTGGAGATACTCGTATGGAGCACCATTGTCGACTGGTGCTCCTAATGTCGGCACTT 1309
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1270 GTCAGTGGAGGTACTCGTATGGAGCACCATTGTCAACTGGTGCTCCTAATGTCGGCACTT 1329
Query 1310 GAGGG 1314
|||||
Sbjct 1330 GAGGG 1334
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64658301960
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5