BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474662
Length=1161
Score E
Sequences producing significant alignments: (Bits) Value
AT1G55920.1 | Symbols: ATSERAT2;1, SAT5, SAT1, SERAT2;1 | serin... 1677 0.0
> AT1G55920.1 | Symbols: ATSERAT2;1, SAT5, SAT1, SERAT2;1 | serine
acetyltransferase 2;1 | chr1:20912116-20913447 FORWARD LENGTH=1332
Length=1332
Score = 1677 bits (908), Expect = 0.0
Identities = 1076/1152 (93%), Gaps = 31/1152 (3%)
Strand=Plus/Plus
Query 34 TAAAATGTAATTAC--TTTGAGAtttttttGGGGTCAGAGTCAAAGGTCGCCGCCATCTC 91
|||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 107 TAAACTGTAATTACTTTTTGAGATTTTTTT-GGGTCAGAGTCAAAGGTCGCCGCCATCTC 165
Query 92 TCTCTTTGTATATAAAGCTATGTTCATCTTCTTCACTCAACAATCATTCTCTCTTCTCTT 151
||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 166 TCTCTGTGTATAT-AAGCTATGTTCATCTTCTTCACTCAACAACCATTCTCTCTTCTCTT 224
Query 152 CCTTTA-CTCAAA----------TT-C----C--AAACCATGGCAACATGCATCGACGCA 193
||||| |||||| || | | ||||||||||||||||||| ||| ||
Sbjct 225 -CTTTATCTCAAACTCTTTCTTCTTCCAAATCATAAACCATGGCAACATGCATAGACACA 283
Query 194 TGCCGAACCGG-AACTACCCAAGACGATGATTCCCGGTTCTGTTGCATCAATAATTTCTT 252
||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 284 TGCCGAACCGGTAA-TACCCAAGACGATGATTCCCGGTTCTGTTGCATCAAGAATTTCTT 342
Query 253 CCGACCCGGTTTCTCTCTAAACCGGAAGATCCACCACACACAAATCGACGACGACGATGA 312
||||||||||||||| ||||||||||||| |||||||| |||||||| || ||||||||
Sbjct 343 TCGACCCGGTTTCTCTGTAAACCGGAAGATTCACCACACCCAAATCGAAGATGACGATGA 402
Query 313 TGTCTGGATCAAGATCCTTGAAGAAGCCAAATCCGATG-TAGAACAAGAACCCATTTTGT 371
||||||||||||||| |||||||||||||||||||||| || |||||||||||||||| |
Sbjct 403 TGTCTGGATCAAGATGCTTGAAGAAGCCAAATCCGATGTTA-AACAAGAACCCATTTTAT 461
Query 372 CAAACTACTACTACGCTTCCATCACATCTCATCGATCTTTAGATTCTGCTTTAGCTCACA 431
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 462 CAAACTACTACTACGCTTCGATCACATCTCATCGATCTTTAGAGTCTGCTTTAGCTCACA 521
Query 432 TCCTCTCCGTAAAGCTCAGCAATTTAAACCTCCCAAGCAACACACTCTTCGAATTGTTCA 491
||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 522 TCCTCTCCGTAAAGCTCAGCAATTTAAACCTACCAAGCAACACACTCTTCGAACTGTTCA 581
Query 492 TCAGTGTTTTAGAAGAAAGCCCTGAGATTATCGAAGCTACGAAGCAAGATCTTATAGCTG 551
| || ||||||||||||||||||||||| |||||| | |||||||||||||||||||| |
Sbjct 582 TAAGCGTTTTAGAAGAAAGCCCTGAGATCATCGAATCCACGAAGCAAGATCTTATAGCAG 641
Query 552 TTAAAGAAAGAGACCCAGCTTGTATAAGCTACGTTCATTGCTTCTTGGGTTTCAAAGGCT 611
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 642 TCAAAGAAAGAGACCCAGCTTGTATAAGCTACGTTCATTGCTTCTTGGGCTTCAAAGGCT 701
Query 612 TCCTCGCTTGTCAAGCTCATCGAATAGCTCATAAGCTCTGGAAACAGAAGAGAAAAATCG 671
||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 702 TCCTCGCTTGTCAAGCTCATCGAATAGCTCATACCCTCTGGAAACAGAACAGAAAAATCG 761
Query 672 TAGCTTTATTGATCCAAAACAGAGTATCGGAAGCTTTCGCCGTCGATATTCATCCGGGAG 731
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||
Sbjct 762 TAGCTTTATTGATCCAAAACAGAGTATCAGAATCTTTCGCCGTCGATATTCATCCCGGAG 821
Query 732 CGAAGATCGGAAAAGGGATTCTTTTAGACCATGCGACGGGGGTGGTGATCGGAGAGACGG 791
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 822 CGAAGATCGGAAAAGGGATTCTTTTAGACCATGCGACGGGCGTGGTGATCGGAGAGACGG 881
Query 792 CGGTGGTTGGAGACAATGTTTCGATTCTACACGGCGTGACGTTGGGAGGAACAGGGAAAC 851
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 882 CGGTGGTTGGAGACAATGTTTCGATTCTACACGGAGTGACCTTGGGAGGAACAGGGAAAC 941
Query 852 AGAGTGGTGATCGGCATCCGAAGATAGGTGATGGAGTGTTGATTGGAGCTGGGACTTGTA 911
||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||
Sbjct 942 AGAGTGGTGATCGGCATCCGAAGATTGGTGATGGTGTGTTGATTGGAGCTGGGAGTTGTA 1001
Query 912 TATTGGGGAATATAACAATTGGTGAGGGAGCTAAGATTGGATCAGGGTCGGTGGTGGTTA 971
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1002 TATTGGGGAATATAACAATCGGTGAGGGAGCTAAGATTGGATCAGGGTCGGTGGTGGTTA 1061
Query 972 AGGATGTGCCGCCGCGTACGACGGCGGTTGGAAATCCGGCGAGATTGATTGGTGGGAAAG 1031
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1062 AGGATGTGCCGGCGCGTACGACGGCGGTTGGAAATCCGGCGAGGTTGATTGGTGGGAAAG 1121
Query 1032 AGAATCCGAGAAAACATGAGAAGATTCCTTGTCTGACTATGGACCAAACATCGTATTTAA 1091
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 1122 AGAATCCGAGAAAACATGATAAGATTCCTTGTCTGACTATGGACCAGACATCGTATTTAA 1181
Query 1092 CCGAATGGTCTGATTATGTGATTTAATTCACAA--GTGTATTTCTTTCTTTCTTGTAACT 1149
|||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1182 CCGAGTGGTCTGATTATGTGATTTAA--CACAAATGTGTATTTCTTTCTTTCTTGTAACT 1239
Query 1150 AATGATGATGAA 1161
|||||||||||
Sbjct 1240 GATGATGATGAA 1251
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56977618575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5