BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg474663 Length=2013 Score E Sequences producing significant alignments: (Bits) Value AT1G55930.1 | Symbols: | CBS domain-containing protein / trans... 1832 0.0 AT3G13070.1 | Symbols: | CBS domain-containing protein / trans... 863 0.0 > AT1G55930.1 | Symbols: | CBS domain-containing protein / transporter associated domain-containing protein | chr1:20918717-20922232 FORWARD LENGTH=2239 Length=2239 Score = 1832 bits (992), Expect = 0.0 Identities = 1116/1174 (95%), Gaps = 16/1174 (1%) Strand=Plus/Plus Query 1 TAAAGAGGAGAAGAAATTGGTATACTCTATCGCCGGAG-A----C-----AT--TTCTAT 48 |||| ||| ||||||||||||| ||||||||||||||| | | || | |||| Sbjct 115 TAAAAAGGGGAAGAAATTGGTAAACTCTATCGCCGGAGAATTTTCGGTTTATCCTCCTAT 174 Query 49 TCATATGGAACTTGATTTATCTGTTCTAGGTCGTTCTTTCATTGCCACCAGGAGGAACTC 108 || ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| Sbjct 175 TCGTATGGAACTTGATTTATCTGTTCTAGGTCGTTCTTTCATTGTCACCAGAAGGAACTC 234 Query 109 AAGTCTCACGCGACTATGTATCCAAAGTTCGAATTTTTCACTAAGACTTCTTCAGAGAAA 168 |||| ||||| ||| |||||||||||| |||||||||||| ||||| ||||||||||||| Sbjct 235 AAGTATCACGAGACCATGTATCCAAAGCTCGAATTTTTCAGTAAGAGTTCTTCAGAGAAA 294 Query 169 CAAGCAGCGCCCACTCTGTATCTTGACTAAT-C-TCTCAAGTTCCAGTTTTATTAGATTC 226 |||||| |||||||||||| ||| |||||| | || ||| ||||||||||||||||||| Sbjct 295 CAAGCATCGCCCACTCTGTTTCTCCACTAATCCGTC-CAA-TTCCAGTTTTATTAGATTC 352 Query 227 CGAAAGGGATGTGACTTTAGCCATAGAAATCAGTTTGTTGTGTTGAGTGCGACTGAAGAT 286 | ||| |||||||||||||| |||||| |||||||||||||||||||||||||| |||| Sbjct 353 CAAAAAGGATGTGACTTTAGTCATAGATGTCAGTTTGTTGTGTTGAGTGCGACTGGAGAT 412 Query 287 CATGTGGGTAGTAGTCAGAAACATTCCGATTCCAGCGAAAAACTCGATTCGATTAGGATT 346 |||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||| Sbjct 413 CATGTGGGTATTAGTCAGAAACATTCCGATTCCACCGAAAAAGTCGATTCGATTAGGATT 472 Query 347 TTGCTGAAACGGGGAATCGTTTTAGGGGCAGTGGTGTGTGGAGTTTTGTTGTATGGATGT 406 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 473 TTGCTGAAACGGGGAATCGTTTTAGGGGCAGTGGTGTGTGGAGTTTTGTTTTATGGATGT 532 Query 407 GGTAAAGTATTAGCATCAACAAATGTGGTGGATGTGGCTTTTAGTAAGAGTGTATTGTTG 466 || ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| Sbjct 533 GGGAAAGTATTAGCATCAACAAGTGTGGTGGATGTGGCTTTTAGTAAGAGTATATTGTTG 592 Query 467 TTGAAGAATGCTTGGCCAAAAACTTCTCAGGTTCTTAAGGTTCTTAGAGAGCAAGGTCTA 526 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 593 TTGAAGAATGCTTGGCCAAAAACTTCTCAGGTTCTTAAGGTTCTTAGAGAGCAAGGTCTA 652 Query 527 ATATTAGCTGTGCTTCTCGGTTTATCAGCATTCTTCTCCATGGCAGAGACTTCCATCACC 586 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 653 ATCTTAGCTGTGCTTCTCGGTTTATCAGCATTCTTCTCCATGGCAGAGACTTCCATCACC 712 Query 587 ACTCTCTGGCCGTGGAAGGTGCGCGAGTTGGCTGAAAAAGAGCCTGAAAATGGCGTTTTC 646 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 713 ACTCTCTGGCCCTGGAAGGTGCGCGAGTTGGCTGAAAAAGAGCCTGAAAATGGCGTTTTC 772 Query 647 AGGATGCTCCGCAGTGATGTTACCAGATTCTTGACAACCATACTTATTGGAACAACTGTT 706 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 773 AGGATGCTCCGCAGTGATGTTACCAGATTTTTGACAACCATACTTATTGGAACAACTGTT 832 Query 707 GTGAATATTGCGGCGACTGCCTTGGTCACTAAAGCAGCAACAGCTATTTTTGGTGAAGCT 766 || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 833 GTTAATATTGCGGCGACTGCCTTGGTCACTAAAGCGGCAACAGCTATTTTTGGTGAAGCT 892 Query 767 GGTGTTAGTGCAGCCACAGGAGTGATGACGGTAGCCATATTACTCCTGACTGAAATAACT 826 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 893 GGTGTTAGTGCAGCCACAGGAGTGATGACGGTAGCCATATTACTCCTGACTGAAATAACT 952 Query 827 CCGAAAAGTGTAGCGGTTCACAATGCTCAAGAGGTTGCAAGGATTGTGGTCAGACCAGTG 886 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 953 CCGAAAAGTGTAGCGGTTCACAATGCTCAAGAGGTTGCCAGGATTGTGGTCAGACCAGTG 1012 Query 887 GCTTGGCTTTCCTTGATATTATATCCTGTTGGAAGAGTAGTGACATATCTTTCGATGGGA 946 || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1013 GCGTGGCTTTCCTTGATATTATATCCTGTTGGAAGAGTAGTAACATATCTTTCGATGGGA 1072 Query 947 ATTCTGAAAATTCTTGGTTTGAAAGGACGGAGTGAGCCATATGTTACTGAAGATGAATTG 1006 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1073 ATTCTGAAAATTCTTGGTTTGAAAGGACGGAGTGAACCATATGTTACTGAAGATGAATTG 1132 Query 1007 AAACTAATGCTACGCGGAGCAGAATTAAGTGGAGCTATAGAAGAGGAAGAGCAGGATATG 1066 |||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||| Sbjct 1133 AAACTAATGCTACGTGGTGCAGAATTAAGTGGGGCTATAGAAGAGGAAGAGCAGGATATG 1192 Query 1067 ATTGAAAATGTGTTAGAGATAAAGGATACGCATGTTCGAGAGGTGATGACTCCTCTTGTT 1126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1193 ATTGAAAATGTGTTAGAGATAAAGGATACGCATGTTCGAGAGGTGATGACTCCTCTTGTT 1252 Query 1127 GATGTAGTTGCAATAGATGGCAGCGGCAGCCTGG 1160 |||||||||||||||||||||||||||||||||| Sbjct 1253 GATGTAGTTGCAATAGATGGCAGCGGCAGCCTGG 1286 Score = 1373 bits (743), Expect = 0.0 Identities = 781/799 (98%), Gaps = 4/799 (1%) Strand=Plus/Plus Query 1215 AGGGTAAATTGCTTGAAAGTACCACTGTGGTGGACATGGCTCATAAACCTGCATTCTTTG 1274 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1404 AGGGTAAATTGCTTGAAAGTACCACTGTGGTGGACATGGCACATAAACCTGCATTCTTTG 1463 Query 1275 TCCCTGATTCGATGTCAGTTTGGAATCTTCTTAGAGAGTTTAGAATAAGAAAGGTTCACA 1334 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1464 TCCCTGATTCGATGTCAGTTTGGAATCTTCTTAGAGAGTTTAGAATAAGAAAGGTTCACA 1523 Query 1335 TGGCAGTTGTTCTTAATGAATACGGTGGAACCATCGGAATAGTAACTCTTGAAGATGTGG 1394 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1524 TGGCAGTTGTTCTTAATGAATATGGTGGAACCATCGGAATAGTAACTCTTGAAGATGTGG 1583 Query 1395 TCGAAGAGATTGTTGGTGAAATATTTGATGAAAACGATTCAAAGGAGGAAATTCAGAAGA 1454 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1584 TCGAAGAGATTGTTGGTGAAATATTTGATGAAAACGATTCAAAGGAGGAAATTCAGAAGA 1643 Query 1455 AAACGGGTTATATCGTGATGAGAGCAGAGGGGATATATGATGTTGATGCCAACACTTCGA 1514 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1644 AAACGGGTTATATCGTGATGAGAGCAGAGGGGATATATGATGTTGATGCCAACACTTCGA 1703 Query 1515 TAGACCAGTTATCTGAAGAACTCAACATAAAGATGGCAGAGGGCCATCAGTATGAGACAG 1574 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1704 TTGACCAGTTATCTGAAGAACTCAACATAAAGATGGCAGAGGGCCATCAGTATGAGACAG 1763 Query 1575 TCTCAGGTTTTGTCTGTGAGGCCTTTGGGTATATCCCAAAGACAGGTGAGAGTGTGACGG 1634 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1764 TCTCAGGTTTTGTCTGTGAGGCCTTTGGGTATATCCCAAAGACAGGTGAGAGTGTGACGG 1823 Query 1635 TGGTTCTTGAAAAGGAAAACTGGGAAGAGAATGATGAACAAGACGAGGGTAAGCAGGAGC 1694 | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1824 TAGTTCTTGAAAAGGAAAACTGGGAAGAGAATGATGAACAAGACGAGGGTAAGCACGAGC 1883 Query 1695 GTCAAGATCAGAAGGAGAAGCACCAAATTTATAGACTAGAGGTACTAGCAGGGAATGCCA 1754 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1884 GTCAAGATCAGAAGGAGAAGCACCAAATTTATAGACTAGAGATACTAGCAGGGAATGCCA 1943 Query 1755 GAAAAGTGAGTGCAGTCCGGTTCGAACGAGTTAATGATATGGATCAAGTGTCAGAGGCCC 1814 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1944 GAAAAGTGAGTGCAGTCCGGTTCGAACGAGTTAGTGATATGGATCAAGTGTCAGAGGCCC 2003 Query 1815 GGGATGTGAAAAACATGGTTCCCAAGTTCGTAAGAAAATGGAGCAGCGAGGAAGATTCCG 1874 | ||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||| Sbjct 2004 GAGATGTAAAAAACATGGTTCCCAAATTCGTAAGAAAATGGAGCAGTGAGGAAGATTCCG 2063 Query 1875 ATGGTAATCTCCAAGCCAAGAATGCCGTCTTTGATGAGCATCTAATTGCTGAAACTGAAA 1934 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 2064 ATGGTAATCTCCAAGCCAAGAATGCCGTCTTTGATGAGCATCTAATTGCAGAAACTGAAA 2123 Query 1935 GTATGAAGAAAGAATAATGATAAAAGAGGAGGAAAGAGGCAGTTGTAAGTTTTAATTGCA 1994 |||||||||||||||||||||||||||||| || |||| ||||||||||| ||||||| Sbjct 2124 GTATGAAGAAAGAATAATGATAAAAGAGGA--AA-GAGGT-GTTGTAAGTTTAAATTGCA 2179 Query 1995 TGTATAGAAAGACTCGTTA 2013 ||||||||||||||||||| Sbjct 2180 TGTATAGAAAGACTCGTTA 2198 > AT3G13070.1 | Symbols: | CBS domain-containing protein / transporter associated domain-containing protein | chr3:4191351-4195112 REVERSE LENGTH=2146 Length=2146 Score = 863 bits (467), Expect = 0.0 Identities = 734/862 (85%), Gaps = 22/862 (3%) Strand=Plus/Plus Query 311 TCCGATTCCAGCGAAAA--A-CTCGATTCGATT-AGGATTTTGCTGAAACGGGGAATCGT 366 |||||||| | ||||| | || || |||||| ||| ||||||||||||| ||||| || Sbjct 262 TCCGATTCTGGTGAAAAGGAGCTGGAGTCGATTAAGG-TTTTGCTGAAACGTGGAATTGT 320 Query 367 TTTAGGGGCAGTGGTGTGTGGAGTTTTGTTGTATGGATGT-GGTAAAGTATTAGCATCAA 425 |||| || | || ||||||||||| |||||||||||| | ||||| || ||||| Sbjct 321 GATAGGAGCTCTAGTCTGTGGAGTTTTCTTGTATGGATGTCAG-AAAGTGTTGGCATCGG 379 Query 426 CAAATGTGGT-G--G-A---TGTG-GCT-TTTAGTAAGAGTGTATTGTTGTTGAAGAATG 476 | |||||| | | | | || | | ||| || |||| ||| ||||||| ||||||| Sbjct 380 CTGGTGTGGTCGAAGCAGGCTATGAGGTGTTTGGTCAGAGCGTAGTGTTGTTTAAGAATG 439 Query 477 CTTGGCCAAAAACTT-CTCAGGTTCTTAAGGTTCTTAGAGAGCAAGGTCTAATATTAGCT 535 ||| ||| |||| || | |||||||||| |||||||||||||||||||||||| || ||| Sbjct 440 CTTTGCCTAAAATTTAC-CAGGTTCTTACGGTTCTTAGAGAGCAAGGTCTAATTTTGGCT 498 Query 536 GTGCTTCTCGGTTTATCAGCATTCTTCTCCATGGCAGAGACTTCCATCACCACTCTCTGG 595 | ||| ||| | | |||||||||||||| ||||||||||| ||||| |||||||| ||| Sbjct 499 GCGCTGCTCAGCCTCTCAGCATTCTTCTCTATGGCAGAGACGTCCATTACCACTCTGTGG 558 Query 596 CCGTGGAAGGTGCGCGAGTTGGCTGAAAAAGAGCCTGAAAATGGCGTTTTCAGGATGCTC 655 |||||||||||||| ||||||||||| ||||| || || ||||| || ||||| |||||| Sbjct 559 CCGTGGAAGGTGCGTGAGTTGGCTGAGAAAGAACCAGAGAATGGTGTATTCAGAATGCTC 618 Query 656 CGCAGTGATGTTACCAGATTCTTGACAACCATACTTATTGGAACAACTGTTGTGAATATT 715 || |||||||| |||||||||||||| || |||||||||||||||||||||||||||||| Sbjct 619 CGGAGTGATGTCACCAGATTCTTGACGACTATACTTATTGGAACAACTGTTGTGAATATT 678 Query 716 GCGGCGACTGC-CTTGGTCACTAAAGCAGCAACAGCTATTTTTGGTGAAGCTGGTGTTAG 774 ||||| ||||| || ||||||| |||||||||||||||| ||||| |||||||||||||| Sbjct 679 GCGGCAACTGCACT-GGTCACTGAAGCAGCAACAGCTATATTTGGGGAAGCTGGTGTTAG 737 Query 775 TGCAGCCACAGGAGTGATGACGGTAGCCATATTACTCCTGACTGAAATAACTCCGAAAAG 834 ||| ||||| ||| ||||||| || || || |||||||||||||| || ||||| ||||| Sbjct 738 TGCTGCCACTGGATTGATGACAGTGGCTATTTTACTCCTGACTGAGATTACTCCAAAAAG 797 Query 835 TGTAGCGGTTCACAATGCTCAAGAGGTTGCAAGGATTGTGGTCAGACCAGTGGCTTGGCT 894 ||| || || |||||||||||||| |||||||||||||||||||| |||||||| ||||| Sbjct 798 TGTTGCTGTGCACAATGCTCAAGAAGTTGCAAGGATTGTGGTCAGGCCAGTGGCGTGGCT 857 Query 895 TTCCTT-GATATTATATCCTGTTGGAAGAGTAGTGACATATCTTTCGATGGGAATTCTGA 953 |||||| | ||||||||||||| |||||| | || |||||||| || |||||||| |||| Sbjct 858 TTCCTTAG-TATTATATCCTGTCGGAAGAATTGTCACATATCTGTCAATGGGAATACTGA 916 Query 954 AAATTCTTGGTTTGAAAGGACGGAGTGAGCCATATGTTACTGAAGATGAATTGAAACTAA 1013 |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| | Sbjct 917 AAATTCTTGGTTTGAAAGGACGGAGTGAACCATATGTTACTGAAGATGAGTTGAAACTGA 976 Query 1014 TGCTACGCGGAGCAGAATTAAGTGGAGCTATAGAAGAGGAAGAGCAGGATATGATTGAAA 1073 ||||| | || |||||||| ||||| || || ||||| || ||||||||||||||||||| Sbjct 977 TGCTAAGAGGTGCAGAATTGAGTGGTGCCATTGAAGAAGAGGAGCAGGATATGATTGAAA 1036 Query 1074 ATGTGTTAGAGATAAAGGATACGCATGTTCGAGAGGTGATGACTCCTCTTGTTGATGTAG 1133 ||||| ||||||| |||||||| ||||||||||||||||||||||| ||||||||||||| Sbjct 1037 ATGTGCTAGAGATTAAGGATACCCATGTTCGAGAGGTGATGACTCCCCTTGTTGATGTAG 1096 Query 1134 TTGCAATAGATGGCAGCGGCAG 1155 | ||||| || | ||||| ||| Sbjct 1097 TCGCAATTGACGCCAGCGCCAG 1118 Score = 710 bits (384), Expect = 0.0 Identities = 564/650 (87%), Gaps = 16/650 (2%) Strand=Plus/Plus Query 1229 GAAAGTACCACTGTGGTGGACATGGCTCATAAACCTGCATTCTTT-GTCCCTGATTCGAT 1287 |||||||| |||||| ||||||||| |||||||||||| | ||| ||||||||||| || Sbjct 1255 GAAAGTACTTCTGTGGGGGACATGGCACATAAACCTGCA-TATTTCGTCCCTGATTCAAT 1313 Query 1288 GTCAGTTTGGAATCTTCTTAGAGAGTTTAGAATAAGAAAGGTTCACATGGCAGTTGTTCT 1347 ||| |||||||||||||||||||| || |||||||||||||||||||||||||||| || Sbjct 1314 GTCTGTTTGGAATCTTCTTAGAGAATTCCGAATAAGAAAGGTTCACATGGCAGTTGTCCT 1373 Query 1348 TAATGAATACGGTGGAACCATCGGAATAGTAACTCTTGAAGATGTGGTCGAAGAGATTGT 1407 ||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1374 TAACGAATATGGTGGAACGATCGGAATAGTAACTCTTGAAGATGTGGTCGAAGAGATTGT 1433 Query 1408 TGGTGAAATATTTGATGAAAACGATTC-AAAGGAGGAAATTCAGAAGAAAACGGGTTATA 1466 ||||||||| ||||||||||||||||| |||| |||| |||||||||||||| || |||| Sbjct 1434 TGGTGAAATTTTTGATGAAAACGATTCCAAAG-AGGAGATTCAGAAGAAAACAGGATATA 1492 Query 1467 TCGTGATGAGAGCA-GAGGGGATATATGATGTTGATGCCAACACTTCGATAGACCAGTTA 1525 | || ||||||| | ||||| ||||||||||||||||| || || || || |||||| || Sbjct 1493 TTGTCATGAGAG-ATGAGGGCATATATGATGTTGATGCTAATACATCAATTGACCAGCTA 1551 Query 1526 TCTGAAGAACTCAACAT-AAAGATGGCAGAGGGCCAT-CAGTATGAGACAGTCTCAGGTT 1583 ||||||||||| || || ||| ||| |||||||| || ||||| |||||||||||||| | Sbjct 1552 TCTGAAGAACTGAATATGAAA-ATGCCAGAGGGC-ATTCAGTACGAGACAGTCTCAGGCT 1609 Query 1584 TTGTCTGTGAGGCCTTTGGGTATATCCCAAAGACAGGTGAGAGTGTGACGGTGGTTCTTG 1643 |||| |||||||||||||||||||||||||| || || || ||||||| ||| ||||||| Sbjct 1610 TTGTGTGTGAGGCCTTTGGGTATATCCCAAAAACTGGAGAAAGTGTGAAGGTTGTTCTTG 1669 Query 1644 AAAAGGAAAACTGGGAAGAGAATGATGAACAAGACGAGGGTAAGCAGGAGCGTCAAGATC 1703 ||||||||| |||||||||| ||| ||| | || || ||||| |||||| | ||||| | Sbjct 1670 AAAAGGAAAGCTGGGAAGAGGATGGTGAGGAGGAGGAAGGTAAACAGGAGAGGCAAGAGC 1729 Query 1704 -AGAAGGAGAAGCACCAAATTTATAGACTAGAGGTACTAGCAGGGAATGCCAGAAAAGTG 1762 | ||||| ||| ||||||| |||||| ||||| |||||||||||||||| |||||||| Sbjct 1730 CA-AAGGAAAAGAACCAAATCTATAGAGTAGAGATACTAGCAGGGAATGCAAGAAAAGTT 1788 Query 1763 AGTGCAGTCCGGTTCGA-ACGAGTTAATGATATGGATCAAGTGTCAGAGGCCCGGGATGT 1821 ||||| |||||||| || | |||| || ||||||||||||||||| ||||| | ||||| Sbjct 1789 AGTGCTGTCCGGTTTGAGA-GAGTGAACGATATGGATCAAGTGTCGGAGGCAAGTGATGT 1847 Query 1822 GAAAAA-CATGGTTCCCAAGTTCGTAAGAAAATGGAGCAGCGAGGAAGAT 1870 ||||| |||||||||||| || ||||| |||||||||||||| |||||| Sbjct 1848 -AAAAAGCATGGTTCCCAAATTTGTAAGGAAATGGAGCAGCGAAGAAGAT 1896 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 99748482915 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5