BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474667
Length=1598
Score E
Sequences producing significant alignments: (Bits) Value
AT1G56000.1 | Symbols: | FAD/NAD(P)-binding oxidoreductase fam... 2560 0.0
AT1G55980.1 | Symbols: | FAD/NAD(P)-binding oxidoreductase fam... 1683 0.0
AT1G56010.2 | Symbols: NAC1, ANAC022 | NAC domain containing pr... 220 3e-56
AT1G31900.1 | Symbols: | pseudogene of unknown protein | chr1:... 122 7e-27
> AT1G56000.1 | Symbols: | FAD/NAD(P)-binding oxidoreductase family
protein | chr1:20944141-20946718 FORWARD LENGTH=1588
Length=1588
Score = 2560 bits (1386), Expect = 0.0
Identities = 1529/1598 (96%), Gaps = 10/1598 (1%)
Strand=Plus/Plus
Query 1 GCAAACCGATGGCAGCCACAACAATTTCGCCGGCGATTAGGAAACAAATGAGCACCGTTG 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 GCAAACCGATGGCAGCCACAACAATTTCGCCGGCGATTAGGAAACAAATGAGCAGCGTTG 60
Query 61 CCGTCGCAATGAAGGTCGCCGTAATCGGCAGCGGAATTTCTGGAGCCGTGTGTGCATCGA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCGTCGCAATGAAGGTCGCCGTAATCGGCAGCGGAATTTCTGGAGCCGTGTGTGCATCGA 120
Query 121 CTCTGGCAAGGAATGGCGTCTCCGTCACTATCTTCGACTCGGGTCGTGGACCTGGTGGAC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTCTGGCAAGGAATGGCGTCTCCGTCACTATCTTCGACTCGGGTCGTGGACCTGGTGGAC 180
Query 181 GCATGTCTCAAAGGAGAGAGATTGGAGAAGATGGGAAGGAGTTGATGTTCGACCATGGAG 240
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GCATGTCTCAAAGAAGAGAGATTGGAGAAGATGGGAAGGAGTTGATGTTCGACCATGGAG 240
Query 241 CTCCATTTTTCTGTGTGGGCAACTCTGATGCAATGGCTCTTGTTCATGAGTGGGAGTCCA 300
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 241 CTCCATTTTTCTGTGTGAGCAACTCTGATGCCATGGCTCTTGTTCATGAGTGGGAATCCA 300
Query 301 GAGGTTTTGTTTCTGAATGGAAACAAGTTTTTGGGAGTTTCGATTGTGCCTCCAACAAGT 360
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 301 GAGGTTTTGTTTCTGAATGGAAACAAGTTTTTGGGAGTTTTGATTGTGCCTCCAACAAGT 360
Query 361 TTCTTGGCATCCAACAGGAAGGGGATGCAAAGAAGTATGTGGGTGTTCCGGGCATGAACT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TTCTTGGCATCCAACAGGAAGGGGATGCAAAGAAGTATGTGGGTGTTCCGGGCATGAACT 420
Query 421 CTATATCTAAGGCCTTGTGTCACGAGTCTGGTGTTAAAACTATGTTTGGAACTGGTATTG 480
|||||||||||||||||||| | |||||||||||||| | ||||||||||||||||||||
Sbjct 421 CTATATCTAAGGCCTTGTGTAATGAGTCTGGTGTTAAGAGTATGTTTGGAACTGGTATTG 480
Query 481 CCAAGCTGGAATGGTTGGAAGAAGAGATACCATGGTTGTTGACTGATTCAAAAGGAGATA 540
||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 481 CCAAGATGGAATGGTTGGAAGAAGAGATACCATGGTTGTTGACAGATTCAAAAGGAGAAA 540
Query 541 ATTTGGGTCGTTTCTATGGAGTGGTTGCATCAGATAAAAACATTGTTTCTCCAAGGTTTA 600
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 ATTTGGGTCGTTTCGATGGAGTGGTTGCATCAGATAAAAACATTGTTTCTCCAAGGTTTA 600
Query 601 CTCAAGTAACCGGACTCCCACCGCCACTGGACTTAAGTCTAGTCCCAGAGTTGGCGACTA 660
|||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 601 CTCAAGTAACTGGACTCCCACCGCCTCTGGACTTAAGTCTAGTCCCGGAGTTGGCGACTA 660
Query 661 AGCTGCAAAATATTCCTGTTCTACCATGCTTCTCTCTTATGCTAGCTTTCAAGGAGCCGT 720
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AGCTGCAAAACATTCCTGTTCTACCATGCTTCTCTCTTATGCTAGCTTTCAAGGAGCCGT 720
Query 721 TGTCTTCGATACCAGTAAAAGGCTTATCTTTCAAGAATTCAGAGATTTTGAGCTGGGCTC 780
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TGTCCTCGATACCAGTAAAGGGCTTATCTTTCAAGAATTCAGAGATTTTGAGCTGGGCTC 780
Query 781 ATTGTGATAGCACCAAGCCTGGACGGTCTACTGATAGTGAAAGATGGATACTGCATTCTA 840
| ||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 781 ACTGTGAAAGCACCAAGCCGGGACGGTCTACTGATAGTGAAAGGTGGATACTGCATTCTA 840
Query 841 CTCCAGACTATGCCAACAGTGTTATTGCCAAGACGGGCCTCCAAAAGCTATCAAGTGAAA 900
|||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||
Sbjct 841 CTCCAGACTATGCCAACAGTGTTATTGCTAAGACCGGCCTCCAAAAGCTATCGAGTGAAA 900
Query 901 CACTAAACAAAATATCTGAAGAGATGTTCAAAGAGTTTCAGTGCTCAGGCCTTGTTAGTT 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 CACTAAACAAAATATCTGAAGAGATGTTCAAAGAGTTTCAGTGCTCAGGCCTTGTTAGTT 960
Query 961 CTCTCCCCTTTTTCATGAAAGCCCACAGATGGGGAAGTGCGTTTCCAGCCAGAAGCATAG 1020
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 961 CTCTCCCCTTTTTCATGAAAGCCCACAGATGGGGAAGTGCGTTTCCAGCCAAAAGCATAG 1020
Query 1021 CTGTAGAGGAGAGGTGCCTTTGGGATAGAAACAGGAATCTAGCAATCTGTGGAGATTTCT 1080
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 CCGTAGAGGAGAGGTGCCTTTGGGATAGAAACAGGAATCTAGCAATCTGTGGAGATTTCT 1080
Query 1081 GTGTCAGCCCAAATGTCGAAGGTGCCATTCTCAGTGGCTTAGCTGCAGCGTCAAAGCTTT 1140
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1081 GTGTCAGCCCAAATGTTGAAGGTGCAATTCTCAGTGGCTTAGCTGCAGCGTCAAAGCTTT 1140
Query 1141 TGCAGACTTCTAGCTGCTTATAGGTACGGAGGTACCATATTGAATGTATCCCCAATACCT 1200
||||||||||||||||||||||||||| || |||||| ||| ||||||||||||
Sbjct 1141 TGCAGACTTCTAGCTGCTTATAGGTAC-------CC-TATTGAGTGTGTCCCCAATACCT 1192
Query 1201 CGAAACAGAGTAATATATACATTTATATAAAGATTCTACTAGAATCATGTAAAATGACAA 1260
| ||||||||||| | | |||||||||||||||||||||||||||||||||||||||| |
Sbjct 1193 CAAAACAGAGTAACAAAAACATTTATATAAAGATTCTACTAGAATCATGTAAAATGACTA 1252
Query 1261 CGACAGTGTTCCTCGTGAACTCTATCCGCCGATGAAACAGATACATATCGGAATATCATG 1320
|||| | | |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1253 TGACAATCTCCCTCGTGAACTCTATCGGCCGATGAAACAGATACATATCGGAATATCATG 1312
Query 1321 TGATCTTCCTAAATCTCTACTTTGTTCCTTGAGAAATGATAGCCAGCGCAGTTCTATCGA 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1313 TGATCTTCCTAAATCTCTACTTTGTTCCTTGAGAAATGATAGCCAGCGCAGTTCTATCGA 1372
Query 1381 TGAAAGTGCCATTCACGGTGCTTATCGATGGATTCGATTGGCAACATCTACGAAAGAACC 1440
||||||||||| || | |||||| | |||||||| ||||||||||||||||||||||||
Sbjct 1373 TGAAAGTGCCAGTCGCAGTGCTTTTTGATGGATTTAATTGGCAACATCTACGAAAGAACC 1432
Query 1441 AGTGCCTTGGCTATGCAATCACCTATCCCATCATGTCCACAGGTAGTGATGTTTCATATT 1500
| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1433 ACTGCCTTGGCTATTCAATCACCTATCCCATCATGTACACAGGTAGTGATGTTTCATATT 1492
Query 1501 ATCTTATTGATCAATCGTTCTAGAGGTCCCTAATACCTTGAAACAAATGGAACTACGATG 1560
||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1493 ATCTTTTTGATCAATTGTTCTAGAGGTCCTTAATACCTTGAAACAAATGGAACTACGATG 1552
Query 1561 AAatatatatatatGTATAACGTCATAAGTGGTATTTT 1598
|||||||| ||| || || ||||||||||||||||||
Sbjct 1553 AAATATATGTAT--GTCTAGCGTCATAAGTGGTATTTT 1588
> AT1G55980.1 | Symbols: | FAD/NAD(P)-binding oxidoreductase family
protein | chr1:20938899-20941813 REVERSE LENGTH=1401
Length=1401
Score = 1683 bits (911), Expect = 0.0
Identities = 965/992 (97%), Gaps = 0/992 (0%)
Strand=Plus/Plus
Query 1 GCAAACCGATGGCAGCCACAACAATTTCGCCGGCGATTAGGAAACAAATGAGCACCGTTG 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 407 GCAAACCGATGGCAGCCACAACAATTTCGCCGGCGATTAGGAAACAAATGAGCAGCGTTG 466
Query 61 CCGTCGCAATGAAGGTCGCCGTAATCGGCAGCGGAATTTCTGGAGCCGTGTGTGCATCGA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 467 CCGTCGCAATGAAGGTCGCCGTAATCGGCAGCGGAATTTCTGGAGCCGTGTGTGCATCGA 526
Query 121 CTCTGGCAAGGAATGGCGTCTCCGTCACTATCTTCGACTCGGGTCGTGGACCTGGTGGAC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 527 CTCTGGCAAGGAATGGCGTCTCCGTCACTATCTTCGACTCGGGTCGTGGACCTGGTGGAC 586
Query 181 GCATGTCTCAAAGGAGAGAGATTGGAGAAGATGGGAAGGAGTTGATGTTCGACCATGGAG 240
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 587 GCATGTCTCAAAGAAGAGAGATTGGAGAAGATGGGAAGGAGTTGATGTTCGACCATGGAG 646
Query 241 CTCCATTTTTCTGTGTGGGCAACTCTGATGCAATGGCTCTTGTTCATGAGTGGGAGTCCA 300
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 647 CTCCATTTTTCTGTGTGAGCAACTCTGATGCCATGGCTCTTGTTCATGAGTGGGAATCCA 706
Query 301 GAGGTTTTGTTTCTGAATGGAAACAAGTTTTTGGGAGTTTCGATTGTGCCTCCAACAAGT 360
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 707 GAGGTTTTGTTTCTGAATGGAAACAAGTTTTTGGGAGTTTTGATTGTGCCTCCAACAAGT 766
Query 361 TTCTTGGCATCCAACAGGAAGGGGATGCAAAGAAGTATGTGGGTGTTCCGGGCATGAACT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 767 TTCTTGGCATCCAACAGGAAGGGGATGCAAAGAAGTATGTGGGTGTTCCGGGCATGAACT 826
Query 421 CTATATCTAAGGCCTTGTGTCACGAGTCTGGTGTTAAAACTATGTTTGGAACTGGTATTG 480
|||||||||||||||||||| | |||||||||||||| | ||||||||||||||||||||
Sbjct 827 CTATATCTAAGGCCTTGTGTAATGAGTCTGGTGTTAAGAGTATGTTTGGAACTGGTATTG 886
Query 481 CCAAGCTGGAATGGTTGGAAGAAGAGATACCATGGTTGTTGACTGATTCAAAAGGAGATA 540
||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 887 CCAAGATGGAATGGTTGGAAGAAGAGATACCATGGTTGTTGACAGATTCAAAAGGAGAAA 946
Query 541 ATTTGGGTCGTTTCTATGGAGTGGTTGCATCAGATAAAAACATTGTTTCTCCAAGGTTTA 600
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 947 ATTTGGGTCGTTTCGATGGAGTGGTTGCATCAGATAAAAACATTGTTTCTCCAAGGTTTA 1006
Query 601 CTCAAGTAACCGGACTCCCACCGCCACTGGACTTAAGTCTAGTCCCAGAGTTGGCGACTA 660
|||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 1007 CTCAAGTAACTGGACTCCCACCGCCTCTGGACTTAAGTCTAGTCCCGGAGTTGGCGACTA 1066
Query 661 AGCTGCAAAATATTCCTGTTCTACCATGCTTCTCTCTTATGCTAGCTTTCAAGGAGCCGT 720
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1067 AGCTGCAAAACATTCCTGTTCTACCATGCTTCTCTCTTATGCTAGCTTTCAAGGAGCCGT 1126
Query 721 TGTCTTCGATACCAGTAAAAGGCTTATCTTTCAAGAATTCAGAGATTTTGAGCTGGGCTC 780
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1127 TGTCCTCGATACCAGTAAAGGGCTTATCTTTCAAGAATTCAGAGATTTTGAGCTGGGCTC 1186
Query 781 ATTGTGATAGCACCAAGCCTGGACGGTCTACTGATAGTGAAAGATGGATACTGCATTCTA 840
| ||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1187 ACTGTGAAAGCACCAAGCCGGGACGGTCTACTGATAGTGAAAGGTGGATACTGCATTCTA 1246
Query 841 CTCCAGACTATGCCAACAGTGTTATTGCCAAGACGGGCCTCCAAAAGCTATCAAGTGAAA 900
|||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||
Sbjct 1247 CTCCAGACTATGCCAACAGTGTTATTGCTAAGACCGGCCTCCAAAAGCTATCGAGTGAAA 1306
Query 901 CACTAAACAAAATATCTGAAGAGATGTTCAAAGAGTTTCAGTGCTCAGGCCTTGTTAGTT 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1307 CACTAAACAAAATATCTGAAGAGATGTTCAAAGAGTTTCAGTGCTCAGGCCTTGTTAGTT 1366
Query 961 CTCTCCCCTTTTTCATGAAAGCCCACAGATGG 992
||||||||||||||||||||||||||||||||
Sbjct 1367 CTCTCCCCTTTTTCATGAAAGCCCACAGATGG 1398
> AT1G56010.2 | Symbols: NAC1, ANAC022 | NAC domain containing
protein 1 | chr1:20946571-20949281 REVERSE LENGTH=1393
Length=1393
Score = 220 bits (119), Expect = 3e-56
Identities = 140/150 (93%), Gaps = 2/150 (1%)
Strand=Plus/Minus
Query 1449 GGCTATGCAATCACCTATCCCATCATGTCCACAGGTAGTGATGTTTCATATTATCTTATT 1508
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 1393 GGCTATTCAATCACCTATCCCATCATGTACACAGGTAGTGATGTTTCATATTATCTTTTT 1334
Query 1509 GATCAATCGTTCTAGAGGTCCCTAATACCTTGAAACAAATGGAACTACGATGAAatatat 1568
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1333 GATCAATTGTTCTAGAGGTCCTTAATACCTTGAAACAAATGGAACTACGATGAAATATAT 1274
Query 1569 atatatGTATAACGTCATAAGTGGTATTTT 1598
||| || || ||||||||||||||||||
Sbjct 1273 GTAT--GTCTAGCGTCATAAGTGGTATTTT 1246
> AT1G31900.1 | Symbols: | pseudogene of unknown protein | chr1:11457877-11458134
FORWARD LENGTH=258
Length=258
Score = 122 bits (66), Expect = 7e-27
Identities = 72/75 (96%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 378 GAAGGGGATGCAAAGAAGTATGTGGGTGTTCCGGGCATGAACTCTATATCTAAGGCCTTG 437
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1 GAAGGGGATGCAAAGAAGTATGTGGGTGTTCCGGGAATGAACTCTATATCTAATGCCTTG 60
Query 438 TGTCACGAGTCTGGT 452
||| |||||||||||
Sbjct 61 TGTAACGAGTCTGGT 75
Score = 76.8 bits (41), Expect = 6e-13
Identities = 43/44 (98%), Gaps = 0/44 (0%)
Strand=Plus/Plus
Query 450 GGTGTTAAAACTATGTTTGGAACTGGTATTGCCAAGCTGGAATG 493
|||||||||| |||||||||||||||||||||||||||||||||
Sbjct 165 GGTGTTAAAAGTATGTTTGGAACTGGTATTGCCAAGCTGGAATG 208
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78915256740
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5