BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474670
Length=1318
Score E
Sequences producing significant alignments: (Bits) Value
AT1G56020.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1620 0.0
> AT1G56020.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G12970.1);
Has 3011 Blast hits to 958 proteins in 192 species: Archae
- 0; Bacteria - 193; Metazoa - 479; Fungi - 286; Plants - 158;
Viruses - 8; Other Eukaryotes - 1887 (source: NCBI BLink).
| chr1:20952144-20953547 FORWARD LENGTH=1404
Length=1404
Score = 1620 bits (877), Expect = 0.0
Identities = 1118/1226 (91%), Gaps = 50/1226 (4%)
Strand=Plus/Plus
Query 36 AATGGCTTCCGCTTGCGTGAAAAGTGCCGGTGTTTCGCCGGAGAAGTTTTCGTCGTACGG 95
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 72 AATGGCTTCCGCTTGCGTTAAAAGTGCCGGTGTTTCGCCGGAGAAGTTCTCGTCGTACGG 131
Query 96 ATGGACGAGCCCTCGAATGTCTTTAACCCGAGAAGACAACACACGCTCTTCCTCCGTCGA 155
||||||||||||||| |||||||||||| |||| ||||||| ||||||||||||||| ||
Sbjct 132 ATGGACGAGCCCTCGGATGTCTTTAACCAGAGACGACAACAGACGCTCTTCCTCCGTTGA 191
Query 156 CAAGCAACAATCTGACCCATCACCGGAAAACCAAGATCCAGTTGTGGATTTCGAGTTTTG 215
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 192 CAAGCAACAATCTGACCCATTACCGGAAATCCAAGATCCAGTTGTGGATTTCGAGTTTTG 251
Query 216 TCTCGAAGATCCGGTCACAATGCTCTCCGCCGATGAGCTCTTCTCCGACGGAAAGCTCGT 275
|| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 252 CCTTGAGGATCCGGTCACAATGCTCTCTGCCGATGAGCTCTTCTCCGACGGAAAGCTCGT 311
Query 276 ACCTTTGAAGTTCTCTGG-CC-----C--C-A--A-GACGACG---ACG---GTCAGCAC 317
|||||||||||||||||| || | | | | ||||||| ||| |||| |||
Sbjct 312 ACCTTTGAAGTTCTCTGGCCCTAAGACGACGACGACGACGACGTCAACGACAGTCAACAC 371
Query 318 AACTACCACCGAACCAAGAGGATCACCGGAGGTTCTTAAATCTTGCCGGAGACTTGAGAT 377
||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||
Sbjct 372 AACTACCACCGAACCAAGAGGATCACCAGAGGTTCTGAAATCATGCCGGAGACTTGAGAT 431
Query 378 GGAGATCTCTGACCTCTTCTCTCCTAAAGCTCCTCGTTGTACGACTCGATGGAAAGAGCT 437
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 432 GGAGATCTCTGACCTCTTCTCTCCTAAAGCTCCTCGTTGTACGACTCGATGGAGAGAGCT 491
Query 438 TTTAGGTCTCAAGAGACTTGTCAACTCCAA--AGC-ACAAGAATCTGTTAAAGCTTCTTC 494
|||||||||||||||||| |||||| |||| | | | |||||||| |||||||||||||
Sbjct 492 TTTAGGTCTCAAGAGACTCGTCAACGCCAAGGAACAAGAAGAATCTATTAAAGCTTCTTC 551
Query 495 ATCTTCTTCACCCACAAACGCAAAAACGTCGTCGTTTAAGCAATTTCTTCACCGGGGATC 554
||||||||| |||||||| | |||||||| |||||||||||||||||||||||||||||
Sbjct 552 TTCTTCTTCATCCACAAACCCCAAAACGTCATCGTTTAAGCAATTTCTTCACCGGGGATC 611
Query 555 TAAATCTTCCGCCGCCACCGCCGCCGCCACCGCATCGTCTCCGTTGCAAAAAGAATCAGA 614
|||||||| | | ||| |||||||||| ||||||||||||||||||||
Sbjct 612 TAAATCTT------CTA------CCG---CCGCATCGTCGCCGTTGCAAAAAGAATCAGA 656
Query 615 TATCTCCGAATCAATCTCAATCGCATCTTCACGTCTCTCACTCTCTTCATCGTCTTCCTC 674
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 657 TATCTCCGAATCAATCTCAGTCGCATCTTCACGTCTCTCACTCTCTTCATCGTCTTCCTC 716
Query 675 TAGCCACGAGATCGATGACCTTCCAAGACTCTCGCTTGATATCGATAAACCAAGTCCTAA 734
|||||||||||||||||| |||||||||||||||||||| |||||||||||||| | ||
Sbjct 717 TAGCCACGAGATCGATGATCTTCCAAGACTCTCGCTTGACCTCGATAAACCAAGTGCGAA 776
Query 735 TCCCTTTGCTCCGTCGCGGACTCACTCACGAAACCTTAACCAACCAAGAATCAGATTAGC 794
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 777 TCCCTTTGCTCCGTCGCGGACTCATTCACGAAACCTTAACCAACCAAGAATCAGATTAGC 836
Query 795 CAAACCAAGACGGCATAATCATCCACCGTCGACGCCTTCCGTTGACGGATCATCATCATC 854
||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 CAAACCAAGACGG-A-A-TCATCCACCGTCGACGCCTTCCGTTGACGGATCATCATCATC 893
Query 855 ATCGGCGAACATCGAATCTCGAGGACTCACCGTGACGGCGGATAGTCCGAGACTTAACGC 914
|||||| ||||||||||| || ||||||||||||||||||||||||||||| |||||
Sbjct 894 GTCGGCGTGTATCGAATCTCGGGGTCTCACCGTGACGGCGGATAGTCCGAGACTCAACGC 953
Query 915 CTCCGGTAAAATCGTGTTTCACGGACTTGAAAGAAGCTCGAGTAGTCCCGGAAGCTTCAC 974
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 954 CTCCGGTAAAATCGTGTTTCATGGACTTGAAAGAAGCTCGAGTAGTCCCGGAAGCTTCAC 1013
Query 975 CGGTGGACCTAGAATGAAGCAGTACCATGGAATGCCGAGATCGTACTCTGCTAATGTCAG 1034
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 1014 CGGTGGACCTAGAATGAAGCAGCACCATGGAATGCCTAGATCGTACTCTGCTAATGTCAG 1073
Query 1035 AATCACGCCGGTGCTCAATGTTCCGGTTTGTTCGT-TAAAATCAGGGCTTTTCTTCGGTC 1093
||||||||||||||| ||||||||||||||||| | | ||||||||||||||||| || |
Sbjct 1074 AATCACGCCGGTGCTTAATGTTCCGGTTTGTTC-TCTGAAATCAGGGCTTTTCTTTGGCC 1132
Query 1094 AGATTTTCTCATCGTCGTCGTCATCTTCGTCTTCATCGTCATCTTCTCCGTCTCCGGGGA 1153
|| |||||||||| ||||| ||||| |||||| | || | | |||||||||||||||
Sbjct 1133 AGCTTTTCTCATCTTCGTCTTCATC---GTCTTC-T--TC-T-T-CTCCGTCTCCGGGGA 1183
Query 1154 ACAAATCTCAGTTACAGAGCAACGGCGGCAAGAACCGGATTAATCGAACCAGGCTTGAAC 1213
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1184 ACAAATCTCAGTTACAGAGCAACGGAAGCAAGAACCGGATTAATCGAACCAGGCTTGAAC 1243
Query 1214 CAAAATTCGAACAATTAGAAAAGTAA 1239
| ||||||||||||||||| ||||||
Sbjct 1244 CGAAATTCGAACAATTAGAGAAGTAA 1269
Score = 89.8 bits (48), Expect = 6e-17
Identities = 58/63 (92%), Gaps = 0/63 (0%)
Strand=Plus/Plus
Query 1256 GGGTTGTTTTGTAAACTGAAGTTAAATTTGGGGACTGAATATGTAAATACGGTTTAACAA 1315
|||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 1335 GGGTCGTTTTGTAAACTGAAGTTTTCTTTGGGGGCTGAATATGTAAATACGGTTTAACAA 1394
Query 1316 TTT 1318
|||
Sbjct 1395 TTT 1397
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64859104140
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5